Rh7CG111300

RNA polymerase II C-terminal domain phosphatase-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
Physical Location & Seq
Forward (+)
8618128 .. 8619288
1161 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG111300.1

Sequence Viewer

Length: 1161 bp
ATGAGTATTGGTTTCATACCCAAGGGGGTCTCCAATACCCTAAGTGATGAATTCATTGACCGTTTACGTAAGGTCAACACTAACTATATGCTACGCCTTAGAAAACTCCACCTAGTACTTGATCTAAATCACACCCTGCTGGCTCTCACAAAACTCAGTGATCTGACTCCCGAAGAAGAAGAATATTTAAACAATACCCAAACACTGCAAGATGTTTTCAAAGTGCAAGCTCCTGATGACAGTATGAGCCCTATGATTATCAAGTTGAGACCCTTCGTTAGAACCTTTCTCAGGAAAGCAAGTGACATGTTCGAAATGTATGTTTACGAAGATGCTTCTCAATCTCTTGTGAGGAAGATGGTTGAGCTACTGGATCCTAAGAATGACTACTTTGGTCAAAGAGTGATTTCGCGCGAGGATTATTTTTGGAGCAACCACATGGGAAAGAAGCATCTTGATCTTGTGCTTGGCCAGGAGTCTGCTGTTTTGATCCTTGGGGATAACCTCGAGGCATGGACGGAGCAAAATCAAAAGAACATAGCTGTCCCAGTGCAAAAGTATCCTTTCTTTAAACAAAGTTGTGGCCAGAAGAGCAGGCGCAAGTCTCTTTGTGAGTTGAAAAATGATGAAGGGGGGATTTATCTTGCAAATGTTCTTCAACGTCTTAGGCGAATACACAACATGTTCTTTAATGATCAAGTGATGTGTGATGAGGTTTTCAACAGAGATGTGAGGATGGTGTTAAAAAGTGTCGAATGGATTTCCAAGATCGATAAGAGGAAGAAGTTAAAAAGTGTCAAAATGATTTCTAAGACCGATAAGCTTCTGTTGAGGAAGAAGGCATTATCAAACTGTATGTGGAAAAAGAGTGATCACCGGAAGAAGAAGAAGAAGACAGAGAAGATGGAAGAGCAGTCACCGGAAGCTTCTTATGTTGAGAAACTAGAGGATCCAGCAGCTGATGATGTTGGAACGCCACCGGCTCCTTGGGTACACCCTAGCTGGATTGAAAAATCAATCCATTTGTGGAAAAAGAGTCATGCAGACAAGGGCCCTGTTACCACCGAGGAGGGCGAATTTAGTTGCAGCTCATATTGGAACGCTGGAATAGATAATCAGCGGGGAAATGAGGAAGTTGCCCTTGGAAGGCCAGAGAAATAG

Protein Analysis

386

Amino Acids

44.95

Weight (kDa)

9.06

Isoelectric Point (pI)

49.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NIF PF03031 37 - 187 8.3e-21 NLI interacting factor-like phosphatase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0019039)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0189951
rosa_laevigata RLG00000004574
rosa_multiflora Rmu_co8509437.1_g000001
rosa_roxburghii Rroxscaffold_3G00265020
rosa_rugosa Rorug06G0501400
rosa_samantha Rh7AG106500 Rh7BG109200 Rh7CG111300 Rh7DG109700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 506
AccII CGCG 2 cut(s) 412, 414
AciI CCGC 1 cut(s) 1120
AclWI GGATC 5 cut(s) 368, 381, 484, 944, 957
AcoI YGGCCR 2 cut(s) 469, 583
AcsI RAATTY 2 cut(s) 50, 1076
AfaI GTAC 2 cut(s) 117, 993
AfiI CCNNNNNNNGG 2 cut(s) 291, 1146
AflIII ACRYGT 2 cut(s) 306, 681
AgsI TTSAA 5 cut(s) 220, 619, 659, 721, 1010
AjnI CCWGG 1 cut(s) 471
AjuI GAANNNNNNNTTGG 2 cut(s) 1125, 1157
AluBI AGCT 8 cut(s) 230, 367, 542, 823, 926, 959, 1002, 1089
AluI AGCT 8 cut(s) 230, 367, 542, 823, 926, 959, 1002, 1089
Alw26I GTCTC 3 cut(s) 34, 262, 609
AlwI GGATC 5 cut(s) 368, 381, 484, 944, 957
AlwNI CAGNNNCTG 1 cut(s) 959
Ama87I CYCGRG 1 cut(s) 506
AoxI GGCC 4 cut(s) 469, 583, 1051, 1148
ApaI GGGCCC 1 cut(s) 1055
ApeKI GCWGC 2 cut(s) 956, 1086
ApoI RAATTY 2 cut(s) 50, 1076
AspLEI GCGC 2 cut(s) 414, 600
AspS9I GGNCC 2 cut(s) 1051, 1052
AsuHPI GGTGA 2 cut(s) 866, 909
AsuII TTCGAA 1 cut(s) 312
AvaI CYCGRG 1 cut(s) 506
BaeGI GKGCMC 1 cut(s) 1055
BalI TGGCCA 2 cut(s) 471, 585
BamHI GGATCC 2 cut(s) 373, 949
BanII GRGCYC 2 cut(s) 251, 1055
BbsI GAAGAC 1 cut(s) 899
BbvI GCAGC 2 cut(s) 968, 1098
BccI CCATC 3 cut(s) 352, 730, 898
BciT130I CCWGG 1 cut(s) 473
BciVI GTATCC 1 cut(s) 570
BclI TGATCA 2 cut(s) 694, 871
BcoDI GTCTC 3 cut(s) 34, 262, 609
BfaI CTAG 3 cut(s) 113, 944, 999
BfuI GTATCC 1 cut(s) 570
BisI GCNGC 2 cut(s) 957, 1087
BlsI GCNGC 2 cut(s) 958, 1088
BmcAI AGTACT 1 cut(s) 117
Bme1390I CCNGG 1 cut(s) 473
BmeT110I CYCGRG 1 cut(s) 506
BmgT120I GGNCC 2 cut(s) 1051, 1052
BmiI GGNNCC 4 cut(s) 375, 951, 984, 1053
BmrFI CCNGG 1 cut(s) 473
BmrI ACTGGG 1 cut(s) 542
BmsI GCATC 2 cut(s) 322, 460
BmuI ACTGGG 1 cut(s) 542
BpiI GAAGAC 1 cut(s) 899
Bpu14I TTCGAA 1 cut(s) 312
Bsa29I ATCGAT 1 cut(s) 771
BsaAI YACGTR 1 cut(s) 68
BsaBI GATNNNNATC 1 cut(s) 126
BsaI GGTCTC 2 cut(s) 34, 262
BsaJI CCNNGG 5 cut(s) 21, 493, 986, 1065, 1141
BsaWI WCCGGW 2 cut(s) 876, 919
Bsc4I CCNNNNNNNGG 2 cut(s) 291, 1146
Bse118I RCCGGY 1 cut(s) 979
Bse1I ACTGG 2 cut(s) 375, 548
Bse8I GATNNNNATC 1 cut(s) 126
BseBI CCWGG 1 cut(s) 473
BseCI ATCGAT 1 cut(s) 771
BseDI CCNNGG 5 cut(s) 21, 493, 986, 1065, 1141
BseGI GGATG 1 cut(s) 741
BseJI GATNNNNATC 1 cut(s) 126
BseLI CCNNNNNNNGG 2 cut(s) 291, 1146
BseMII CTCAG 2 cut(s) 169, 304
BseNI ACTGG 2 cut(s) 375, 548
BseRI GAGGAG 1 cut(s) 1082
BseSI GKGCMC 1 cut(s) 1055
BseXI GCAGC 2 cut(s) 968, 1098
Bsh1236I CGCG 2 cut(s) 412, 414
BshFI GGCC 4 cut(s) 471, 585, 1053, 1150
BshVI ATCGAT 1 cut(s) 771
BsiHKCI CYCGRG 1 cut(s) 506
BsiSI CCGG 3 cut(s) 877, 920, 980
BslFI GGGAC 1 cut(s) 530
BslI CCNNNNNNNGG 2 cut(s) 291, 1146
BsmAI GTCTC 3 cut(s) 34, 262, 609
BsmFI GGGAC 1 cut(s) 530
BsnI GGCC 4 cut(s) 471, 585, 1053, 1150
Bso31I GGTCTC 2 cut(s) 34, 262
BsoBI CYCGRG 1 cut(s) 506
Bsp119I TTCGAA 1 cut(s) 312
Bsp120I GGGCCC 1 cut(s) 1051
Bsp1286I GDGCHC 2 cut(s) 251, 1055
Bsp143I GATC 9 cut(s) 121, 160, 373, 457, 489, 694, 768, 871, 949
BspACI CCGC 1 cut(s) 1120
BspANI GGCC 4 cut(s) 471, 585, 1053, 1150
BspCNI CTCAG 2 cut(s) 168, 303
BspDI ATCGAT 1 cut(s) 771
BspFNI CGCG 2 cut(s) 412, 414
BspLI GGNNCC 4 cut(s) 375, 951, 984, 1053
BspPI GGATC 5 cut(s) 368, 381, 484, 944, 957
BspQI GCTCTTC 2 cut(s) 584, 903
BspT104I TTCGAA 1 cut(s) 312
BspTNI GGTCTC 2 cut(s) 34, 262
BsrFI RCCGGY 1 cut(s) 979
BsrI ACTGG 2 cut(s) 375, 548
BssAI RCCGGY 1 cut(s) 979
BssECI CCNNGG 5 cut(s) 21, 493, 986, 1065, 1141
BssMI GATC 9 cut(s) 121, 160, 373, 457, 489, 694, 768, 871, 949
BssT1I CCWWGG 4 cut(s) 21, 493, 986, 1141
Bst2UI CCWGG 1 cut(s) 473
Bst4CI ACNGT 3 cut(s) 62, 242, 854
Bst6I CTCTTC 2 cut(s) 584, 903
BstBAI YACGTR 1 cut(s) 68
BstBI TTCGAA 1 cut(s) 312
BstC8I GCNNGC 3 cut(s) 141, 228, 596
BstDEI CTNAG 7 cut(s) 41, 98, 155, 290, 378, 665, 810
BstENI CCTNNNNNAGG 1 cut(s) 289
BstF5I GGATG 1 cut(s) 741
BstFNI CGCG 2 cut(s) 412, 414
BstHHI GCGC 2 cut(s) 414, 600
BstKTI GATC 9 cut(s) 124, 163, 376, 460, 492, 697, 771, 874, 952
BstMAI GTCTC 3 cut(s) 34, 262, 609
BstMBI GATC 9 cut(s) 121, 160, 373, 457, 489, 694, 768, 871, 949
BstMWI GCNNNNNNNGC 1 cut(s) 591
BstNI CCWGG 1 cut(s) 473
BstNSI RCATGY 2 cut(s) 310, 685
BstSCI CCNGG 1 cut(s) 471
BstSLI GKGCMC 1 cut(s) 1055
BstSNI TACGTA 1 cut(s) 68
BstUI CGCG 2 cut(s) 412, 414
BstV1I GCAGC 2 cut(s) 968, 1098
BstV2I GAAGAC 1 cut(s) 899
BstX2I RGATCY 2 cut(s) 373, 949
BstYI RGATCY 2 cut(s) 373, 949
Bsu15I ATCGAT 1 cut(s) 771
BsuI GTATCC 1 cut(s) 570
BsuRI GGCC 4 cut(s) 471, 585, 1053, 1150
BsuTUI ATCGAT 1 cut(s) 771
BtsCI GGATG 1 cut(s) 741
BtsI GCAGTG 1 cut(s) 203
BtsIMutI CAGTG 3 cut(s) 163, 203, 555
Cac8I GCNNGC 3 cut(s) 141, 228, 596
CaiI CAGNNNCTG 1 cut(s) 959
CfoI GCGC 2 cut(s) 414, 600
Cfr10I RCCGGY 1 cut(s) 979
Cfr13I GGNCC 2 cut(s) 1051, 1052
ClaI ATCGAT 1 cut(s) 771
Csp6I GTAC 2 cut(s) 116, 992
CviAII CATG 5 cut(s) 307, 439, 513, 682, 1040
CviQI GTAC 2 cut(s) 116, 992
DdeI CTNAG 7 cut(s) 41, 98, 155, 290, 378, 665, 810
DpnI GATC 9 cut(s) 123, 162, 375, 459, 491, 696, 770, 873, 951
DpnII GATC 9 cut(s) 121, 160, 373, 457, 489, 694, 768, 871, 949
DraI TTTAAA 2 cut(s) 189, 571
EaeI YGGCCR 2 cut(s) 469, 583
Eam1104I CTCTTC 2 cut(s) 584, 903
EarI CTCTTC 2 cut(s) 584, 903
Eco105I TACGTA 1 cut(s) 68
Eco130I CCWWGG 4 cut(s) 21, 493, 986, 1141
Eco24I GRGCYC 2 cut(s) 251, 1055
Eco31I GGTCTC 2 cut(s) 34, 262
Eco88I CYCGRG 1 cut(s) 506
EcoNI CCTNNNNNAGG 1 cut(s) 289
EcoO109I RGGNCCY 2 cut(s) 1051, 1052
EcoRI GAATTC 1 cut(s) 50
EcoRII CCWGG 1 cut(s) 471
EcoT14I CCWWGG 4 cut(s) 21, 493, 986, 1141
EcoT38I GRGCYC 2 cut(s) 251, 1055
ErhI CCWWGG 4 cut(s) 21, 493, 986, 1141
FaeI CATG 5 cut(s) 310, 442, 516, 685, 1043
FalI AAGNNNNNCTT 2 cut(s) 1125, 1157
FaqI GGGAC 1 cut(s) 530
FatI CATG 5 cut(s) 306, 438, 512, 681, 1039
FauI CCCGC 1 cut(s) 1113
FbaI TGATCA 2 cut(s) 694, 871
Fnu4HI GCNGC 2 cut(s) 957, 1087
FokI GGATG 1 cut(s) 748
FriOI GRGCYC 2 cut(s) 251, 1055
Fsp4HI GCNGC 2 cut(s) 957, 1087
FspBI CTAG 3 cut(s) 113, 944, 999
GlaI GCGC 2 cut(s) 413, 599
GluI GCNGC 2 cut(s) 957, 1087
HaeIII GGCC 4 cut(s) 471, 585, 1053, 1150
HapII CCGG 3 cut(s) 877, 920, 980
HhaI GCGC 2 cut(s) 414, 600
Hin1II CATG 5 cut(s) 310, 442, 516, 685, 1043
Hin6I GCGC 2 cut(s) 412, 598
HinP1I GCGC 2 cut(s) 412, 598
HincII GTYRAC 1 cut(s) 76
HindII GTYRAC 1 cut(s) 76
HindIII AAGCTT 2 cut(s) 821, 924
HinfI GANTC 3 cut(s) 166, 476, 1036
HpaII CCGG 3 cut(s) 877, 920, 980
HphI GGTGA 2 cut(s) 866, 909
Hpy166II GTNNAC 4 cut(s) 65, 76, 325, 994
Hpy188I TCNGA 1 cut(s) 165
Hpy188III TCNNGA 4 cut(s) 170, 233, 292, 455
Hpy8I GTNNAC 4 cut(s) 65, 76, 325, 994
HpyAV CCTTC 4 cut(s) 283, 623, 832, 1140
HpyCH4III ACNGT 3 cut(s) 62, 242, 854
HpyCH4IV ACGT 2 cut(s) 67, 661
HpyCH4V TGCA 6 cut(s) 208, 226, 553, 647, 1043, 1086
HpyF10VI GCNNNNNNNGC 1 cut(s) 591
HpyF3I CTNAG 7 cut(s) 41, 98, 155, 290, 378, 665, 810
HpySE526I ACGT 2 cut(s) 67, 661
Hsp92II CATG 5 cut(s) 310, 442, 516, 685, 1043
HspAI GCGC 2 cut(s) 412, 598
Ksp22I TGATCA 2 cut(s) 694, 871
Kzo9I GATC 9 cut(s) 121, 160, 373, 457, 489, 694, 768, 871, 949
LguI GCTCTTC 2 cut(s) 584, 903
LmnI GCTCC 4 cut(s) 235, 429, 520, 988
Lsp1109I GCAGC 2 cut(s) 968, 1098
LweI GCATC 2 cut(s) 322, 460
MaeI CTAG 3 cut(s) 113, 944, 999
MaeII ACGT 2 cut(s) 67, 661
MaeIII GTNAC 3 cut(s) 302, 915, 1057
MalI GATC 9 cut(s) 123, 162, 375, 459, 491, 696, 770, 873, 951
MboI GATC 9 cut(s) 121, 160, 373, 457, 489, 694, 768, 871, 949
MflI RGATCY 2 cut(s) 373, 949
MhlI GDGCHC 2 cut(s) 251, 1055
MlsI TGGCCA 2 cut(s) 471, 585
MluCI AATT 2 cut(s) 50, 1076
MluNI TGGCCA 2 cut(s) 471, 585
MlyI GAGTC 3 cut(s) 160, 485, 1045
MmeI TCCRAC 1 cut(s) 949
Mox20I TGGCCA 2 cut(s) 471, 585
MscI TGGCCA 2 cut(s) 471, 585
MseI TTAA 5 cut(s) 188, 570, 690, 743, 788
Msp20I TGGCCA 2 cut(s) 471, 585
MspA1I CMGCKG 2 cut(s) 959, 1120
MspI CCGG 3 cut(s) 877, 920, 980
MspR9I CCNGG 1 cut(s) 473
MvaI CCWGG 1 cut(s) 473
MvnI CGCG 2 cut(s) 412, 414
MwoI GCNNNNNNNGC 1 cut(s) 591
NdeII GATC 9 cut(s) 121, 160, 373, 457, 489, 694, 768, 871, 949
NlaIII CATG 5 cut(s) 310, 442, 516, 685, 1043
NlaIV GGNNCC 4 cut(s) 375, 951, 984, 1053
NmuCI GTSAC 2 cut(s) 302, 915
NspI RCATGY 2 cut(s) 310, 685
NspV TTCGAA 1 cut(s) 312
PaeR7I CTCGAG 1 cut(s) 506
PciI ACATGT 2 cut(s) 306, 681
PciSI GCTCTTC 2 cut(s) 584, 903
PcsI WCGNNNNNNNCGW 1 cut(s) 667
PkrI GCNGC 2 cut(s) 958, 1088
PleI GAGTC 3 cut(s) 160, 484, 1044
PpsI GAGTC 3 cut(s) 160, 484, 1044
Ppu21I YACGTR 1 cut(s) 68
PscI ACATGT 2 cut(s) 306, 681
Psp6I CCWGG 1 cut(s) 471
PspGI CCWGG 1 cut(s) 471
PspN4I GGNNCC 4 cut(s) 375, 951, 984, 1053
PspOMI GGGCCC 1 cut(s) 1051
PspPI GGNCC 2 cut(s) 1051, 1052
PspXI VCTCGAGB 1 cut(s) 506
PstNI CAGNNNCTG 1 cut(s) 959
PsuI RGATCY 2 cut(s) 373, 949
PvuII CAGCTG 1 cut(s) 959
RsaI GTAC 2 cut(s) 117, 993
RsaNI GTAC 2 cut(s) 116, 992
SapI GCTCTTC 2 cut(s) 584, 903
SaqAI TTAA 5 cut(s) 188, 570, 690, 743, 788
SatI GCNGC 2 cut(s) 957, 1087
Sau3AI GATC 9 cut(s) 121, 160, 373, 457, 489, 694, 768, 871, 949
Sau96I GGNCC 2 cut(s) 1051, 1052
ScaI AGTACT 1 cut(s) 117
SchI GAGTC 3 cut(s) 160, 485, 1045
ScrFI CCNGG 1 cut(s) 473
SduI GDGCHC 2 cut(s) 251, 1055
SfaNI GCATC 2 cut(s) 322, 460
Sfr274I CTCGAG 1 cut(s) 506
SfuI TTCGAA 1 cut(s) 312
SlaI CTCGAG 1 cut(s) 506
SmlI CTYRAG 1 cut(s) 506
SmoI CTYRAG 1 cut(s) 506
SnaBI TACGTA 1 cut(s) 68
Sse9I AATT 2 cut(s) 50, 1076
SsiI CCGC 1 cut(s) 1120
SspI AATATT 1 cut(s) 185
SspMI CTAG 3 cut(s) 113, 944, 999
StyD4I CCNGG 1 cut(s) 471
StyI CCWWGG 4 cut(s) 21, 493, 986, 1141
TaaI ACNGT 3 cut(s) 62, 242, 854
TaiI ACGT 2 cut(s) 70, 664
TaqI TCGA 4 cut(s) 312, 507, 753, 771
TaqII GACCGA 1 cut(s) 830
TasI AATT 2 cut(s) 50, 1076
TatI WGTACW 1 cut(s) 115
Tru1I TTAA 5 cut(s) 188, 570, 690, 743, 788
Tru9I TTAA 5 cut(s) 188, 570, 690, 743, 788
TscAI CASTG 3 cut(s) 163, 210, 555
TseFI GTSAC 2 cut(s) 302, 915
TseI GCWGC 2 cut(s) 956, 1086
Tsp45I GTSAC 2 cut(s) 302, 915
TspDTI ATGAA 4 cut(s) 4, 43, 63, 642
TspGWI ACGGA 1 cut(s) 533
TspRI CASTG 3 cut(s) 163, 210, 555
XagI CCTNNNNNAGG 1 cut(s) 289
XapI RAATTY 2 cut(s) 50, 1076
XceI RCATGY 2 cut(s) 310, 685
XcmI CCANNNNNNNNNTGG 1 cut(s) 984
XhoI CTCGAG 1 cut(s) 506
XspI CTAG 3 cut(s) 113, 944, 999
ZrmI AGTACT 1 cut(s) 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.