Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0019039

Physical Location & Seq

Genomic Coordinates Reverse (-)

58477721 .. 58478925

Gene Structure 1205 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00265020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGAGTATTGGTTTCATACCCAAGGGGGTCTTCAATACCCTAAGTGATGAATTCATTGACCGTTTACGTAAGGTCAACACTAACTATATGCTACGCCTTAGAAAACTCCACCTAGTACTTGATCTAAATCACACCCTGCTGGCTCTCACAAAACTCAGTGATCTGAGTCCAGAAGAAGAAGAATATTTGAACAATACCCAAACACTGCAAGATGTTTTCAAAGTGCAAGCTCCTGATGACAGTATGAGCCCTATGATTATAAAGTTGAGACCCTTTGTTAGAACCTTTCTCAAGAAAGCAAGTGACATGTTCGAAATGTATGTTTACGAAGATGCTTCTCAATCTCTTGTGAGGAAGATGGTTGAGCTACTGGATCCTAAGAATGAGTACTTTGGTCAAAGAGAGTCTGCTGTTTTGATCCTTGGGGATAACCTCGAGGCATGGACGGAGCAAAATCAAAAGAACATAGCAGTACCAGTGCAAAAGCGAATACACAGCATGTTCTTTAATGATCAAGTGATGTGTGATAAGGTTTTCGACAGAGATGTGAGGATGGTGTTAAAAAGTGTCGAATGGATTTCCAAGACCGATAAGAGGAAGAAGTTAAAAAGTGTCAAAATGATTTCTAAGACCGATAAGCTTCTGTTGAGGAAGAAGGCATTATCAAACTGTATGTGGAAAAAGAGTAATCACCGGAAGAAGAAGAAGACAGAGAAGATGGAAGAGCATTCACCGGAAGCTTCTTATGTTGAAAAACTAGAGGATCCAGAATCATCGGTGGTGGATGCAGCAGCTGATCATGTTGGAACGTCACCGGCTCCTTGGGTACACCCGAGCTGGATTGAAAAATCAATCCATTTGTGGAAAAAGAGTCATGCAGACAAGGGCCCTGCTATCACCGAGGAGGGCGAATTTAGTTGCAGCTCATATTGGAACGCTGGAATAGATAATCAGCGGGGAAATGAGGAAAGTTGCCCTTGGAAGGCCAGAGAAATAGCACAGGATTATGCAGTGTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008022 GO:0008150 GO:0008152 GO:0008420 GO:0009628 GO:0009651 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016311 GO:0016591 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070940 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT NIF PTCB-BRCT

Protein Analysis

339

Amino Acids

39.3

Weight (kDa)

8.44

Isoelectric Point (pI)

48.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NIF	PF03031	37 - 134	7e-14	NLI interacting factor-like phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019039)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0189951
rosa_laevigata	RLG00000004574
rosa_multiflora	Rmu_co8509437.1_g000001
rosa_roxburghii	Rroxscaffold_3G00265020
rosa_rugosa	Rorug06G0501400
rosa_samantha	Rh7AG106500 Rh7BG109200 Rh7CG111300 Rh7DG109700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	260
AbsI	CCTCGAGG	1 cut(s)	434
AciI	CCGC	1 cut(s)	955
AclWI	GGATC	5 cut(s)	368, 381, 412, 758, 771
AcsI	RAATTY	2 cut(s)	50, 911
AfaI	GTAC	4 cut(s)	117, 389, 474, 828
AfiI	CCNNNNNNNGG	2 cut(s)	594, 982
AflIII	ACRYGT	1 cut(s)	306
AgsI	TTSAA	5 cut(s)	34, 190, 220, 752, 845
AjuI	GAANNNNNNNTTGG	2 cut(s)	14, 46
AluBI	AGCT	7 cut(s)	230, 367, 640, 740, 794, 837, 924
AluI	AGCT	7 cut(s)	230, 367, 640, 740, 794, 837, 924
Alw26I	GTCTC	1 cut(s)	262
AlwI	GGATC	5 cut(s)	368, 381, 412, 758, 771
AlwNI	CAGNNNCTG	1 cut(s)	794
Ama87I	CYCGRG	2 cut(s)	434, 832
AoxI	GGCC	2 cut(s)	886, 984
ApaI	GGGCCC	1 cut(s)	890
ApeKI	GCWGC	3 cut(s)	788, 791, 921
ApoI	RAATTY	2 cut(s)	50, 911
AspS9I	GGNCC	2 cut(s)	886, 887
AsuHPI	GGTGA	4 cut(s)	683, 723, 804, 889
AsuII	TTCGAA	1 cut(s)	312
AvaI	CYCGRG	2 cut(s)	434, 832
BaeGI	GKGCMC	1 cut(s)	890
BamHI	GGATCC	2 cut(s)	373, 763
BanII	GRGCYC	2 cut(s)	251, 890
BbsI	GAAGAC	2 cut(s)	22, 713
BbvI	GCAGC	3 cut(s)	800, 803, 933
BccI	CCATC	3 cut(s)	352, 547, 712
BclI	TGATCA	2 cut(s)	511, 796
BcoDI	GTCTC	1 cut(s)	262
BfaI	CTAG	2 cut(s)	113, 758
BisI	GCNGC	3 cut(s)	789, 792, 922
BlsI	GCNGC	3 cut(s)	790, 793, 923
BmcAI	AGTACT	2 cut(s)	117, 389
BmeT110I	CYCGRG	2 cut(s)	434, 832
BmgT120I	GGNCC	2 cut(s)	886, 887
BmiI	GGNNCC	4 cut(s)	375, 765, 819, 888
BmsI	GCATC	2 cut(s)	322, 775
BpiI	GAAGAC	2 cut(s)	22, 713
Bpu14I	TTCGAA	1 cut(s)	312
BpuEI	CTTGAG	1 cut(s)	275
BsaAI	YACGTR	1 cut(s)	68
BsaBI	GATNNNNATC	1 cut(s)	126
BsaI	GGTCTC	1 cut(s)	262
BsaJI	CCNNGG	5 cut(s)	21, 421, 821, 900, 977
BsaWI	WCCGGW	2 cut(s)	693, 733
Bsc4I	CCNNNNNNNGG	2 cut(s)	594, 982
Bse118I	RCCGGY	1 cut(s)	814
Bse1I	ACTGG	2 cut(s)	375, 476
Bse8I	GATNNNNATC	1 cut(s)	126
BseDI	CCNNGG	5 cut(s)	21, 421, 821, 900, 977
BseGI	GGATG	2 cut(s)	558, 790
BseJI	GATNNNNATC	1 cut(s)	126
BseLI	CCNNNNNNNGG	2 cut(s)	594, 982
BseMII	CTCAG	2 cut(s)	155, 169
BseNI	ACTGG	2 cut(s)	375, 476
BseRI	GAGGAG	1 cut(s)	917
BseSI	GKGCMC	1 cut(s)	890
BseXI	GCAGC	3 cut(s)	800, 803, 933
BshFI	GGCC	2 cut(s)	888, 986
BsiHKCI	CYCGRG	2 cut(s)	434, 832
BsiSI	CCGG	3 cut(s)	694, 734, 815
BslI	CCNNNNNNNGG	2 cut(s)	594, 982
BsmAI	GTCTC	1 cut(s)	262
BsmI	GAATGC	1 cut(s)	727
BsnI	GGCC	2 cut(s)	888, 986
Bso31I	GGTCTC	1 cut(s)	262
BsoBI	CYCGRG	2 cut(s)	434, 832
Bsp119I	TTCGAA	1 cut(s)	312
Bsp120I	GGGCCC	1 cut(s)	886
Bsp1286I	GDGCHC	2 cut(s)	251, 890
Bsp143I	GATC	7 cut(s)	121, 160, 373, 417, 511, 763, 796
BspACI	CCGC	1 cut(s)	955
BspANI	GGCC	2 cut(s)	888, 986
BspCNI	CTCAG	2 cut(s)	156, 168
BspLI	GGNNCC	4 cut(s)	375, 765, 819, 888
BspPI	GGATC	5 cut(s)	368, 381, 412, 758, 771
BspQI	GCTCTTC	1 cut(s)	717
BspT104I	TTCGAA	1 cut(s)	312
BspTNI	GGTCTC	1 cut(s)	262
BsrFI	RCCGGY	1 cut(s)	814
BsrI	ACTGG	2 cut(s)	375, 476
BssAI	RCCGGY	1 cut(s)	814
BssECI	CCNNGG	5 cut(s)	21, 421, 821, 900, 977
BssMI	GATC	7 cut(s)	121, 160, 373, 417, 511, 763, 796
BssT1I	CCWWGG	4 cut(s)	21, 421, 821, 977
Bst4CI	ACNGT	3 cut(s)	62, 242, 671
Bst6I	CTCTTC	1 cut(s)	717
BstBAI	YACGTR	1 cut(s)	68
BstBI	TTCGAA	1 cut(s)	312
BstC8I	GCNNGC	2 cut(s)	141, 228
BstDEI	CTNAG	6 cut(s)	41, 98, 155, 164, 378, 627
BstF5I	GGATG	2 cut(s)	558, 790
BstKTI	GATC	7 cut(s)	124, 163, 376, 420, 514, 766, 799
BstMAI	GTCTC	1 cut(s)	262
BstMBI	GATC	7 cut(s)	121, 160, 373, 417, 511, 763, 796
BstNSI	RCATGY	2 cut(s)	310, 502
BstSLI	GKGCMC	1 cut(s)	890
BstSNI	TACGTA	1 cut(s)	68
BstV1I	GCAGC	3 cut(s)	800, 803, 933
BstV2I	GAAGAC	2 cut(s)	22, 713
BstX2I	RGATCY	2 cut(s)	373, 763
BstYI	RGATCY	2 cut(s)	373, 763
BsuRI	GGCC	2 cut(s)	888, 986
BtsCI	GGATG	2 cut(s)	558, 790
BtsI	GCAGTG	2 cut(s)	203, 1017
BtsIMutI	CAGTG	4 cut(s)	163, 203, 483, 1017
Cac8I	GCNNGC	2 cut(s)	141, 228
CaiI	CAGNNNCTG	1 cut(s)	794
Cfr10I	RCCGGY	1 cut(s)	814
Cfr13I	GGNCC	2 cut(s)	886, 887
Csp6I	GTAC	4 cut(s)	116, 388, 473, 827
CviAII	CATG	5 cut(s)	307, 441, 499, 800, 875
CviQI	GTAC	4 cut(s)	116, 388, 473, 827
DdeI	CTNAG	6 cut(s)	41, 98, 155, 164, 378, 627
DpnI	GATC	7 cut(s)	123, 162, 375, 419, 513, 765, 798
DpnII	GATC	7 cut(s)	121, 160, 373, 417, 511, 763, 796
Eam1104I	CTCTTC	1 cut(s)	717
EarI	CTCTTC	1 cut(s)	717
Eco105I	TACGTA	1 cut(s)	68
Eco130I	CCWWGG	4 cut(s)	21, 421, 821, 977
Eco24I	GRGCYC	2 cut(s)	251, 890
Eco31I	GGTCTC	1 cut(s)	262
Eco88I	CYCGRG	2 cut(s)	434, 832
EcoO109I	RGGNCCY	2 cut(s)	886, 887
EcoRI	GAATTC	1 cut(s)	50
EcoT14I	CCWWGG	4 cut(s)	21, 421, 821, 977
EcoT38I	GRGCYC	2 cut(s)	251, 890
ErhI	CCWWGG	4 cut(s)	21, 421, 821, 977
FaeI	CATG	5 cut(s)	310, 444, 502, 803, 878
FalI	AAGNNNNNCTT	4 cut(s)	14, 46, 961, 993
FatI	CATG	5 cut(s)	306, 440, 498, 799, 874
FauI	CCCGC	1 cut(s)	948
FbaI	TGATCA	2 cut(s)	511, 796
Fnu4HI	GCNGC	3 cut(s)	789, 792, 922
FokI	GGATG	2 cut(s)	565, 797
FriOI	GRGCYC	2 cut(s)	251, 890
Fsp4HI	GCNGC	3 cut(s)	789, 792, 922
FspBI	CTAG	2 cut(s)	113, 758
GluI	GCNGC	3 cut(s)	789, 792, 922
HaeIII	GGCC	2 cut(s)	888, 986
HapII	CCGG	3 cut(s)	694, 734, 815
Hin1II	CATG	5 cut(s)	310, 444, 502, 803, 878
HincII	GTYRAC	1 cut(s)	76
HindII	GTYRAC	1 cut(s)	76
HindIII	AAGCTT	2 cut(s)	638, 738
HinfI	GANTC	4 cut(s)	166, 404, 770, 871
HpaII	CCGG	3 cut(s)	694, 734, 815
HphI	GGTGA	4 cut(s)	683, 723, 804, 889
Hpy166II	GTNNAC	4 cut(s)	65, 76, 325, 829
Hpy188I	TCNGA	1 cut(s)	165
Hpy188III	TCNNGA	4 cut(s)	170, 233, 292, 767
Hpy8I	GTNNAC	4 cut(s)	65, 76, 325, 829
HpyAV	CCTTC	2 cut(s)	649, 976
HpyCH4III	ACNGT	3 cut(s)	62, 242, 671
HpyCH4IV	ACGT	2 cut(s)	67, 809
HpyCH4V	TGCA	7 cut(s)	208, 226, 481, 788, 878, 921, 1010
HpyF3I	CTNAG	6 cut(s)	41, 98, 155, 164, 378, 627
HpySE526I	ACGT	2 cut(s)	67, 809
Hsp92II	CATG	5 cut(s)	310, 444, 502, 803, 878
Ksp22I	TGATCA	2 cut(s)	511, 796
Kzo9I	GATC	7 cut(s)	121, 160, 373, 417, 511, 763, 796
LguI	GCTCTTC	1 cut(s)	717
LmnI	GCTCC	3 cut(s)	235, 448, 823
Lsp1109I	GCAGC	3 cut(s)	800, 803, 933
LweI	GCATC	2 cut(s)	322, 775
MaeI	CTAG	2 cut(s)	113, 758
MaeII	ACGT	2 cut(s)	67, 809
MaeIII	GTNAC	2 cut(s)	302, 810
MalI	GATC	7 cut(s)	123, 162, 375, 419, 513, 765, 798
MboI	GATC	7 cut(s)	121, 160, 373, 417, 511, 763, 796
MflI	RGATCY	2 cut(s)	373, 763
MhlI	GDGCHC	2 cut(s)	251, 890
MluCI	AATT	2 cut(s)	50, 911
MlyI	GAGTC	3 cut(s)	175, 413, 880
MmeI	TCCRAC	1 cut(s)	784
MseI	TTAA	3 cut(s)	507, 560, 605
MspA1I	CMGCKG	2 cut(s)	794, 955
MspI	CCGG	3 cut(s)	694, 734, 815
Mva1269I	GAATGC	1 cut(s)	727
NdeII	GATC	7 cut(s)	121, 160, 373, 417, 511, 763, 796
NlaIII	CATG	5 cut(s)	310, 444, 502, 803, 878
NlaIV	GGNNCC	4 cut(s)	375, 765, 819, 888
NmuCI	GTSAC	2 cut(s)	302, 810
NspI	RCATGY	2 cut(s)	310, 502
NspV	TTCGAA	1 cut(s)	312
PaeR7I	CTCGAG	1 cut(s)	434
PciI	ACATGT	1 cut(s)	306
PciSI	GCTCTTC	1 cut(s)	717
PctI	GAATGC	1 cut(s)	727
PfeI	GAWTC	1 cut(s)	770
PkrI	GCNGC	3 cut(s)	790, 793, 923
PleI	GAGTC	3 cut(s)	174, 412, 879
PpsI	GAGTC	3 cut(s)	174, 412, 879
Ppu21I	YACGTR	1 cut(s)	68
PscI	ACATGT	1 cut(s)	306
PsiI	TTATAA	1 cut(s)	260
PspN4I	GGNNCC	4 cut(s)	375, 765, 819, 888
PspOMI	GGGCCC	1 cut(s)	886
PspPI	GGNCC	2 cut(s)	886, 887
PspXI	VCTCGAGB	1 cut(s)	434
PstNI	CAGNNNCTG	1 cut(s)	794
PsuI	RGATCY	2 cut(s)	373, 763
PvuII	CAGCTG	1 cut(s)	794
RsaI	GTAC	4 cut(s)	117, 389, 474, 828
RsaNI	GTAC	4 cut(s)	116, 388, 473, 827
SapI	GCTCTTC	1 cut(s)	717
SaqAI	TTAA	3 cut(s)	507, 560, 605
SatI	GCNGC	3 cut(s)	789, 792, 922
Sau3AI	GATC	7 cut(s)	121, 160, 373, 417, 511, 763, 796
Sau96I	GGNCC	2 cut(s)	886, 887
ScaI	AGTACT	2 cut(s)	117, 389
SchI	GAGTC	3 cut(s)	175, 413, 880
SduI	GDGCHC	2 cut(s)	251, 890
SfaNI	GCATC	2 cut(s)	322, 775
Sfr274I	CTCGAG	1 cut(s)	434
SfuI	TTCGAA	1 cut(s)	312
SlaI	CTCGAG	1 cut(s)	434
SmlI	CTYRAG	2 cut(s)	290, 434
SmoI	CTYRAG	2 cut(s)	290, 434
SnaBI	TACGTA	1 cut(s)	68
Sse9I	AATT	2 cut(s)	50, 911
SsiI	CCGC	1 cut(s)	955
SspI	AATATT	1 cut(s)	185
SspMI	CTAG	2 cut(s)	113, 758
StyI	CCWWGG	4 cut(s)	21, 421, 821, 977
TaaI	ACNGT	3 cut(s)	62, 242, 671
TaiI	ACGT	2 cut(s)	70, 812
TaqI	TCGA	4 cut(s)	312, 435, 537, 570
TaqII	GACCGA	2 cut(s)	602, 647
TasI	AATT	2 cut(s)	50, 911
TatI	WGTACW	2 cut(s)	115, 387
TfiI	GAWTC	1 cut(s)	770
Tru1I	TTAA	3 cut(s)	507, 560, 605
Tru9I	TTAA	3 cut(s)	507, 560, 605
TscAI	CASTG	4 cut(s)	163, 210, 483, 1017
TseFI	GTSAC	2 cut(s)	302, 810
TseI	GCWGC	3 cut(s)	788, 791, 921
Tsp45I	GTSAC	2 cut(s)	302, 810
TspDTI	ATGAA	3 cut(s)	4, 43, 63
TspGWI	ACGGA	1 cut(s)	461
TspRI	CASTG	4 cut(s)	163, 210, 483, 1017
XapI	RAATTY	2 cut(s)	50, 911
XceI	RCATGY	2 cut(s)	310, 502
XhoI	CTCGAG	1 cut(s)	434
XspI	CTAG	2 cut(s)	113, 758
ZrmI	AGTACT	2 cut(s)	117, 389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.