Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0019039

Physical Location & Seq

Genomic Coordinates Reverse (-)

60418117 .. 60419244

Gene Structure 1128 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004574

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGAGTATTGGTTTCATACCCAAGGGGGTCTTCAATACCCTAAGTGATGAATTCATTGACCGTTTACGTAAGGTCAACACTAACTATATGCTACGCCTTAGAAAACTCCACCTGGTACTTGATCTAAATCACACCCTGCTGACTCTCACAAAACTCAGTGATCTGACTCCAGGAGAAGAAGAATATTTAAACAATACCCAAACACTGCGAGATGTTTTCAAAGTGCAAGCTCCTGATGACGGTATGAGCCCTATCATTATCAAGTTGAGACCCTTTGTTAGAACCTTTCTCAAGAAAGCAAGTGACATGTTCGAAATGTATGTTTACGAAGATGCTCCTCAATCTCTTGTGAGGAAGATGGTTGAGCTACTGGATCCTAAGAATGAGTACTTTGGTCAAAGAGTGATTTCGCGCGAGGATTATTTTTGGAGCAACCACATGGGAAAGAAGCATCTTGATCTTGTGCTTGGCCAGGAGTCTGCTGTTTTGATCCTTGGGGATAACCTCGAGACATGGACGGAGCAAAATCAGAAGAACATAGCAGTACCAGTGCAAAAGTATCCTTTCTTTAAACAAAGTTGTGGCCAGAAGAGCAGGCGCAAGTCTCTGTGTGAGTTGAAAAATGATGAAGGGGGGATTTATCTTGCAAATGTTCTTCAACGTCTTAGGCGAATACACAGCATGTTCTTTAATGATCAAGTGATGTGTGATAAGGTTTTCGACAGAGATGTGAGGATGGTGTTAAAAAGTGTCGAATGGATTTCCAAGAGCGATAAGAGGAAGAAGTTAAAAAGTGTCAAAATGATTTCTAAGACCGATAAGCTTCTGTTGAGGAAGAAGGCATTATCAAACTGTATGTGGAAAAAGAGTAATCACCGGAAGAAGAAGAAGACAGAGAAGATGGAAGAGCAGTCACCGGAAGCTTCTTATGTTGAAAAACTAGAGGATCCAGAATCATCGGTGGTGGCTGCAGCAGCTGATCATGTTGGAACGTCACCGGCTCCTTGGGTACACCCGAGCTGGTTTGAAAAATCAATCCATTTGTGGAAAAAGAGTCATGCAGACAAGGGCCTGTTATCACCGAGGAGGGCGAATTTAGTTGCAGCTCATATTGGAACGCTGGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008022 GO:0008150 GO:0008152 GO:0008420 GO:0009628 GO:0009651 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016311 GO:0016591 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070940 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT NIF PTCB-BRCT

Protein Analysis

376

Amino Acids

43.54

Weight (kDa)

9.53

Isoelectric Point (pI)

46.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NIF	PF03031	37 - 187	3.6e-20	NLI interacting factor-like phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019039)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0189951
rosa_laevigata	RLG00000004574
rosa_multiflora	Rmu_co8509437.1_g000001
rosa_roxburghii	Rroxscaffold_3G00265020
rosa_rugosa	Rorug06G0501400
rosa_samantha	Rh7AG106500 Rh7BG109200 Rh7CG111300 Rh7DG109700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	412, 414
AclWI	GGATC	5 cut(s)	368, 381, 484, 941, 954
AcoI	YGGCCR	2 cut(s)	469, 583
AcsI	RAATTY	2 cut(s)	50, 1093
AfaI	GTAC	4 cut(s)	117, 389, 546, 1011
AfiI	CCNNNNNNNGG	1 cut(s)	239
AflIII	ACRYGT	1 cut(s)	306
AgsI	TTSAA	6 cut(s)	34, 220, 619, 659, 935, 1028
AjnI	CCWGG	3 cut(s)	111, 169, 471
AjuI	GAANNNNNNNTTGG	2 cut(s)	14, 46
AluBI	AGCT	7 cut(s)	230, 367, 823, 923, 977, 1020, 1106
AluI	AGCT	7 cut(s)	230, 367, 823, 923, 977, 1020, 1106
Alw26I	GTCTC	3 cut(s)	262, 503, 609
AlwI	GGATC	5 cut(s)	368, 381, 484, 941, 954
AlwNI	CAGNNNCTG	1 cut(s)	977
Ama87I	CYCGRG	2 cut(s)	506, 1015
AoxI	GGCC	3 cut(s)	469, 583, 1069
ApeKI	GCWGC	4 cut(s)	968, 971, 974, 1103
ApoI	RAATTY	2 cut(s)	50, 1093
AspLEI	GCGC	2 cut(s)	414, 600
AspS9I	GGNCC	1 cut(s)	1069
AsuHPI	GGTGA	4 cut(s)	866, 906, 987, 1071
AsuII	TTCGAA	1 cut(s)	312
AvaI	CYCGRG	2 cut(s)	506, 1015
BalI	TGGCCA	2 cut(s)	471, 585
BamHI	GGATCC	2 cut(s)	373, 946
BanII	GRGCYC	1 cut(s)	251
BbsI	GAAGAC	2 cut(s)	22, 896
BbvI	GCAGC	4 cut(s)	955, 983, 986, 1115
BccI	CCATC	3 cut(s)	352, 730, 895
BciT130I	CCWGG	3 cut(s)	113, 171, 473
BciVI	GTATCC	1 cut(s)	570
BclI	TGATCA	2 cut(s)	694, 979
BcoDI	GTCTC	3 cut(s)	262, 503, 609
BfaI	CTAG	1 cut(s)	941
BfmI	CTRYAG	1 cut(s)	969
BfuI	GTATCC	1 cut(s)	570
BisI	GCNGC	4 cut(s)	969, 972, 975, 1104
BlsI	GCNGC	4 cut(s)	970, 973, 976, 1105
BmcAI	AGTACT	1 cut(s)	389
Bme1390I	CCNGG	3 cut(s)	113, 171, 473
BmeT110I	CYCGRG	2 cut(s)	506, 1015
BmgT120I	GGNCC	1 cut(s)	1069
BmiI	GGNNCC	3 cut(s)	375, 948, 1002
BmrFI	CCNGG	3 cut(s)	113, 171, 473
BmsI	GCATC	2 cut(s)	322, 460
BpiI	GAAGAC	2 cut(s)	22, 896
BpmI	CTGGAG	1 cut(s)	153
Bpu14I	TTCGAA	1 cut(s)	312
BpuEI	CTTGAG	1 cut(s)	275
BsaAI	YACGTR	1 cut(s)	68
BsaBI	GATNNNNATC	1 cut(s)	126
BsaI	GGTCTC	1 cut(s)	262
BsaJI	CCNNGG	4 cut(s)	21, 493, 1004, 1082
BsaWI	WCCGGW	2 cut(s)	876, 916
Bsc4I	CCNNNNNNNGG	1 cut(s)	239
Bse118I	RCCGGY	1 cut(s)	997
Bse1I	ACTGG	2 cut(s)	375, 548
Bse8I	GATNNNNATC	1 cut(s)	126
BseBI	CCWGG	3 cut(s)	113, 171, 473
BseDI	CCNNGG	4 cut(s)	21, 493, 1004, 1082
BseGI	GGATG	1 cut(s)	741
BseJI	GATNNNNATC	1 cut(s)	126
BseLI	CCNNNNNNNGG	1 cut(s)	239
BseMII	CTCAG	1 cut(s)	169
BseNI	ACTGG	2 cut(s)	375, 548
BseRI	GAGGAG	2 cut(s)	327, 1099
BseXI	GCAGC	4 cut(s)	955, 983, 986, 1115
Bsh1236I	CGCG	2 cut(s)	412, 414
BshFI	GGCC	3 cut(s)	471, 585, 1071
BsiHKCI	CYCGRG	2 cut(s)	506, 1015
BsiSI	CCGG	3 cut(s)	877, 917, 998
BslI	CCNNNNNNNGG	1 cut(s)	239
BsmAI	GTCTC	3 cut(s)	262, 503, 609
BsnI	GGCC	3 cut(s)	471, 585, 1071
Bso31I	GGTCTC	1 cut(s)	262
BsoBI	CYCGRG	2 cut(s)	506, 1015
Bsp119I	TTCGAA	1 cut(s)	312
Bsp1286I	GDGCHC	1 cut(s)	251
Bsp143I	GATC	8 cut(s)	121, 160, 373, 457, 489, 694, 946, 979
BspANI	GGCC	3 cut(s)	471, 585, 1071
BspCNI	CTCAG	1 cut(s)	168
BspFNI	CGCG	2 cut(s)	412, 414
BspLI	GGNNCC	3 cut(s)	375, 948, 1002
BspMAI	CTGCAG	1 cut(s)	973
BspPI	GGATC	5 cut(s)	368, 381, 484, 941, 954
BspQI	GCTCTTC	2 cut(s)	584, 900
BspT104I	TTCGAA	1 cut(s)	312
BspTNI	GGTCTC	1 cut(s)	262
BsrFI	RCCGGY	1 cut(s)	997
BsrI	ACTGG	2 cut(s)	375, 548
BssAI	RCCGGY	1 cut(s)	997
BssECI	CCNNGG	4 cut(s)	21, 493, 1004, 1082
BssMI	GATC	8 cut(s)	121, 160, 373, 457, 489, 694, 946, 979
BssT1I	CCWWGG	3 cut(s)	21, 493, 1004
Bst2UI	CCWGG	3 cut(s)	113, 171, 473
Bst4CI	ACNGT	3 cut(s)	62, 242, 854
Bst6I	CTCTTC	2 cut(s)	584, 900
BstBAI	YACGTR	1 cut(s)	68
BstBI	TTCGAA	1 cut(s)	312
BstC8I	GCNNGC	2 cut(s)	228, 596
BstDEI	CTNAG	6 cut(s)	41, 98, 155, 378, 665, 810
BstF5I	GGATG	1 cut(s)	741
BstFNI	CGCG	2 cut(s)	412, 414
BstHHI	GCGC	2 cut(s)	414, 600
BstKTI	GATC	8 cut(s)	124, 163, 376, 460, 492, 697, 949, 982
BstMAI	GTCTC	3 cut(s)	262, 503, 609
BstMBI	GATC	8 cut(s)	121, 160, 373, 457, 489, 694, 946, 979
BstMWI	GCNNNNNNNGC	2 cut(s)	591, 974
BstNI	CCWGG	3 cut(s)	113, 171, 473
BstNSI	RCATGY	2 cut(s)	310, 685
BstSCI	CCNGG	3 cut(s)	111, 169, 471
BstSFI	CTRYAG	1 cut(s)	969
BstSNI	TACGTA	1 cut(s)	68
BstUI	CGCG	2 cut(s)	412, 414
BstV1I	GCAGC	4 cut(s)	955, 983, 986, 1115
BstV2I	GAAGAC	2 cut(s)	22, 896
BstX2I	RGATCY	2 cut(s)	373, 946
BstYI	RGATCY	2 cut(s)	373, 946
BsuI	GTATCC	1 cut(s)	570
BsuRI	GGCC	3 cut(s)	471, 585, 1071
BtsCI	GGATG	1 cut(s)	741
BtsI	GCAGTG	1 cut(s)	203
BtsIMutI	CAGTG	3 cut(s)	163, 203, 555
Cac8I	GCNNGC	2 cut(s)	228, 596
CaiI	CAGNNNCTG	1 cut(s)	977
CfoI	GCGC	2 cut(s)	414, 600
Cfr10I	RCCGGY	1 cut(s)	997
Cfr13I	GGNCC	1 cut(s)	1069
CsiI	ACCWGGT	1 cut(s)	111
Csp6I	GTAC	4 cut(s)	116, 388, 545, 1010
CviAII	CATG	6 cut(s)	307, 439, 513, 682, 983, 1058
CviQI	GTAC	4 cut(s)	116, 388, 545, 1010
DdeI	CTNAG	6 cut(s)	41, 98, 155, 378, 665, 810
DpnI	GATC	8 cut(s)	123, 162, 375, 459, 491, 696, 948, 981
DpnII	GATC	8 cut(s)	121, 160, 373, 457, 489, 694, 946, 979
DraI	TTTAAA	2 cut(s)	189, 571
EaeI	YGGCCR	2 cut(s)	469, 583
Eam1104I	CTCTTC	2 cut(s)	584, 900
EarI	CTCTTC	2 cut(s)	584, 900
Eco105I	TACGTA	1 cut(s)	68
Eco130I	CCWWGG	3 cut(s)	21, 493, 1004
Eco24I	GRGCYC	1 cut(s)	251
Eco31I	GGTCTC	1 cut(s)	262
Eco88I	CYCGRG	2 cut(s)	506, 1015
EcoO109I	RGGNCCY	1 cut(s)	1069
EcoRI	GAATTC	1 cut(s)	50
EcoRII	CCWGG	3 cut(s)	111, 169, 471
EcoT14I	CCWWGG	3 cut(s)	21, 493, 1004
EcoT38I	GRGCYC	1 cut(s)	251
ErhI	CCWWGG	3 cut(s)	21, 493, 1004
FaeI	CATG	6 cut(s)	310, 442, 516, 685, 986, 1061
FalI	AAGNNNNNCTT	2 cut(s)	14, 46
FatI	CATG	6 cut(s)	306, 438, 512, 681, 982, 1057
FbaI	TGATCA	2 cut(s)	694, 979
Fnu4HI	GCNGC	4 cut(s)	969, 972, 975, 1104
FokI	GGATG	1 cut(s)	748
FriOI	GRGCYC	1 cut(s)	251
Fsp4HI	GCNGC	4 cut(s)	969, 972, 975, 1104
FspBI	CTAG	1 cut(s)	941
GlaI	GCGC	2 cut(s)	413, 599
GluI	GCNGC	4 cut(s)	969, 972, 975, 1104
GsuI	CTGGAG	1 cut(s)	153
HaeIII	GGCC	3 cut(s)	471, 585, 1071
HapII	CCGG	3 cut(s)	877, 917, 998
HhaI	GCGC	2 cut(s)	414, 600
Hin1II	CATG	6 cut(s)	310, 442, 516, 685, 986, 1061
Hin6I	GCGC	2 cut(s)	412, 598
HinP1I	GCGC	2 cut(s)	412, 598
HincII	GTYRAC	1 cut(s)	76
HindII	GTYRAC	1 cut(s)	76
HindIII	AAGCTT	2 cut(s)	821, 921
HinfI	GANTC	5 cut(s)	142, 166, 476, 953, 1054
HpaII	CCGG	3 cut(s)	877, 917, 998
HphI	GGTGA	4 cut(s)	866, 906, 987, 1071
Hpy166II	GTNNAC	4 cut(s)	65, 76, 325, 1012
Hpy188I	TCNGA	2 cut(s)	165, 531
Hpy188III	TCNNGA	5 cut(s)	233, 292, 455, 508, 950
Hpy8I	GTNNAC	4 cut(s)	65, 76, 325, 1012
HpyAV	CCTTC	2 cut(s)	623, 832
HpyCH4III	ACNGT	3 cut(s)	62, 242, 854
HpyCH4IV	ACGT	3 cut(s)	67, 661, 992
HpyCH4V	TGCA	6 cut(s)	226, 553, 647, 971, 1061, 1103
HpyF10VI	GCNNNNNNNGC	2 cut(s)	591, 974
HpyF3I	CTNAG	6 cut(s)	41, 98, 155, 378, 665, 810
HpySE526I	ACGT	3 cut(s)	67, 661, 992
Hsp92II	CATG	6 cut(s)	310, 442, 516, 685, 986, 1061
HspAI	GCGC	2 cut(s)	412, 598
Ksp22I	TGATCA	2 cut(s)	694, 979
Kzo9I	GATC	8 cut(s)	121, 160, 373, 457, 489, 694, 946, 979
LguI	GCTCTTC	2 cut(s)	584, 900
LmnI	GCTCC	5 cut(s)	235, 340, 429, 520, 1006
Lsp1109I	GCAGC	4 cut(s)	955, 983, 986, 1115
LweI	GCATC	2 cut(s)	322, 460
MabI	ACCWGGT	1 cut(s)	111
MaeI	CTAG	1 cut(s)	941
MaeII	ACGT	3 cut(s)	67, 661, 992
MaeIII	GTNAC	3 cut(s)	302, 912, 993
MalI	GATC	8 cut(s)	123, 162, 375, 459, 491, 696, 948, 981
MboI	GATC	8 cut(s)	121, 160, 373, 457, 489, 694, 946, 979
MflI	RGATCY	2 cut(s)	373, 946
MhlI	GDGCHC	1 cut(s)	251
MlsI	TGGCCA	2 cut(s)	471, 585
MluCI	AATT	2 cut(s)	50, 1093
MluNI	TGGCCA	2 cut(s)	471, 585
MlyI	GAGTC	4 cut(s)	136, 160, 485, 1063
MmeI	TCCRAC	1 cut(s)	967
Mox20I	TGGCCA	2 cut(s)	471, 585
MscI	TGGCCA	2 cut(s)	471, 585
MseI	TTAA	5 cut(s)	188, 570, 690, 743, 788
Msp20I	TGGCCA	2 cut(s)	471, 585
MspA1I	CMGCKG	1 cut(s)	977
MspI	CCGG	3 cut(s)	877, 917, 998
MspR9I	CCNGG	3 cut(s)	113, 171, 473
MvaI	CCWGG	3 cut(s)	113, 171, 473
MvnI	CGCG	2 cut(s)	412, 414
MwoI	GCNNNNNNNGC	2 cut(s)	591, 974
NdeII	GATC	8 cut(s)	121, 160, 373, 457, 489, 694, 946, 979
NlaIII	CATG	6 cut(s)	310, 442, 516, 685, 986, 1061
NlaIV	GGNNCC	3 cut(s)	375, 948, 1002
NmuCI	GTSAC	3 cut(s)	302, 912, 993
NspI	RCATGY	2 cut(s)	310, 685
NspV	TTCGAA	1 cut(s)	312
PaeR7I	CTCGAG	1 cut(s)	506
PciI	ACATGT	1 cut(s)	306
PciSI	GCTCTTC	2 cut(s)	584, 900
PcsI	WCGNNNNNNNCGW	1 cut(s)	667
PfeI	GAWTC	1 cut(s)	953
PfoI	TCCNGGA	1 cut(s)	169
PkrI	GCNGC	4 cut(s)	970, 973, 976, 1105
PleI	GAGTC	4 cut(s)	136, 160, 484, 1062
PpsI	GAGTC	4 cut(s)	136, 160, 484, 1062
Ppu21I	YACGTR	1 cut(s)	68
PscI	ACATGT	1 cut(s)	306
Psp6I	CCWGG	3 cut(s)	111, 169, 471
PspGI	CCWGG	3 cut(s)	111, 169, 471
PspN4I	GGNNCC	3 cut(s)	375, 948, 1002
PspPI	GGNCC	1 cut(s)	1069
PstI	CTGCAG	1 cut(s)	973
PstNI	CAGNNNCTG	1 cut(s)	977
PsuI	RGATCY	2 cut(s)	373, 946
PvuII	CAGCTG	1 cut(s)	977
RsaI	GTAC	4 cut(s)	117, 389, 546, 1011
RsaNI	GTAC	4 cut(s)	116, 388, 545, 1010
SapI	GCTCTTC	2 cut(s)	584, 900
SaqAI	TTAA	5 cut(s)	188, 570, 690, 743, 788
SatI	GCNGC	4 cut(s)	969, 972, 975, 1104
Sau3AI	GATC	8 cut(s)	121, 160, 373, 457, 489, 694, 946, 979
Sau96I	GGNCC	1 cut(s)	1069
ScaI	AGTACT	1 cut(s)	389
SchI	GAGTC	4 cut(s)	136, 160, 485, 1063
ScrFI	CCNGG	3 cut(s)	113, 171, 473
SduI	GDGCHC	1 cut(s)	251
SexAI	ACCWGGT	1 cut(s)	111
SfaNI	GCATC	2 cut(s)	322, 460
SfcI	CTRYAG	1 cut(s)	969
Sfr274I	CTCGAG	1 cut(s)	506
SfuI	TTCGAA	1 cut(s)	312
SlaI	CTCGAG	1 cut(s)	506
SmlI	CTYRAG	2 cut(s)	290, 506
SmoI	CTYRAG	2 cut(s)	290, 506
SnaBI	TACGTA	1 cut(s)	68
Sse9I	AATT	2 cut(s)	50, 1093
SspI	AATATT	1 cut(s)	185
SspMI	CTAG	1 cut(s)	941
StyD4I	CCNGG	3 cut(s)	111, 169, 471
StyI	CCWWGG	3 cut(s)	21, 493, 1004
TaaI	ACNGT	3 cut(s)	62, 242, 854
TaiI	ACGT	3 cut(s)	70, 664, 995
TaqI	TCGA	4 cut(s)	312, 507, 720, 753
TaqII	GACCGA	1 cut(s)	830
TasI	AATT	2 cut(s)	50, 1093
TatI	WGTACW	1 cut(s)	387
TfiI	GAWTC	1 cut(s)	953
Tru1I	TTAA	5 cut(s)	188, 570, 690, 743, 788
Tru9I	TTAA	5 cut(s)	188, 570, 690, 743, 788
TscAI	CASTG	3 cut(s)	163, 210, 555
TseFI	GTSAC	3 cut(s)	302, 912, 993
TseI	GCWGC	4 cut(s)	968, 971, 974, 1103
Tsp45I	GTSAC	3 cut(s)	302, 912, 993
TspDTI	ATGAA	4 cut(s)	4, 43, 63, 642
TspGWI	ACGGA	1 cut(s)	533
TspRI	CASTG	3 cut(s)	163, 210, 555
XapI	RAATTY	2 cut(s)	50, 1093
XceI	RCATGY	2 cut(s)	310, 685
XhoI	CTCGAG	1 cut(s)	506
XspI	CTAG	1 cut(s)	941
ZrmI	AGTACT	1 cut(s)	389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.