RchiOBHm_Chr7g0190871

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Forward (+)
9786514 .. 9787026
513 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 213 bp
ATGGTTTCTAAAGTGGAAGAAGGAATGAAGAGAAGGCAAGAACAGCAGCAGCAGCAGCAGCAGCAGCAGAAGCAGATACAGTACAACTGCAATATCAACAAAGCAAAGGTCTGCAAATTCAAGAGGAGCAGCTCCAATCTCGAAGAGGACGGCGCTTCCACCGCCATTCTCTTGCTGGCTTGTATTGTCTGCACTCCCTCCTCGTATCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

70

Amino Acids

7.99

Weight (kDa)

9.05

Isoelectric Point (pI)

106.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020197)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G50335
prunus_persica Prupe.5G156000_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0190871
rosa_roxburghii Rroxscaffold_3G00264240
rosa_rugosa Rorug06G0507600
rosa_wichuraiana Rw7G009970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 162
AcsI RAATTY 1 cut(s) 116
AfaI GTAC 1 cut(s) 83
AgsI TTSAA 1 cut(s) 121
AluBI AGCT 1 cut(s) 132
AluI AGCT 1 cut(s) 132
ApeKI GCWGC 8 cut(s) 46, 49, 52, 55, 58, 61, 64, 129
ApoI RAATTY 1 cut(s) 116
ArsI GACNNNNNNTTYG 2 cut(s) 93, 125
AspLEI GCGC 1 cut(s) 155
BbvI GCAGC 8 cut(s) 58, 61, 64, 67, 70, 73, 76, 141
BceAI ACGGC 1 cut(s) 166
BfoI RGCGCY 1 cut(s) 156
BisI GCNGC 8 cut(s) 47, 50, 53, 56, 59, 62, 65, 130
BlsI GCNGC 8 cut(s) 48, 51, 54, 57, 60, 63, 66, 131
BseRI GAGGAG 2 cut(s) 139, 190
BseXI GCAGC 8 cut(s) 58, 61, 64, 67, 70, 73, 76, 141
BsgI GTGCAG 1 cut(s) 175
BspACI CCGC 1 cut(s) 162
Bst4CI ACNGT 1 cut(s) 81
Bst6I CTCTTC 2 cut(s) 23, 138
BstC8I GCNNGC 1 cut(s) 177
BstH2I RGCGCY 1 cut(s) 156
BstHHI GCGC 1 cut(s) 155
BstMWI GCNNNNNNNGC 8 cut(s) 43, 52, 55, 58, 61, 64, 70, 161
BstV1I GCAGC 8 cut(s) 58, 61, 64, 67, 70, 73, 76, 141
Cac8I GCNNGC 1 cut(s) 177
CfoI GCGC 1 cut(s) 155
Csp6I GTAC 1 cut(s) 82
CviJI RGCY 2 cut(s) 132, 179
CviKI_1 RGCY 2 cut(s) 132, 179
CviQI GTAC 1 cut(s) 82
Eam1104I CTCTTC 2 cut(s) 23, 138
EarI CTCTTC 2 cut(s) 23, 138
FaiI YATR 1 cut(s) 211
Fnu4HI GCNGC 8 cut(s) 47, 50, 53, 56, 59, 62, 65, 130
Fsp4HI GCNGC 8 cut(s) 47, 50, 53, 56, 59, 62, 65, 130
GlaI GCGC 1 cut(s) 154
GluI GCNGC 8 cut(s) 47, 50, 53, 56, 59, 62, 65, 130
HaeII RGCGCY 1 cut(s) 156
HhaI GCGC 1 cut(s) 155
Hin6I GCGC 1 cut(s) 153
HinP1I GCGC 1 cut(s) 153
Hpy188III TCNNGA 2 cut(s) 121, 140
HpyAV CCTTC 2 cut(s) 14, 27
HpyCH4III ACNGT 1 cut(s) 81
HpyCH4V TGCA 3 cut(s) 90, 114, 192
HpyF10VI GCNNNNNNNGC 8 cut(s) 43, 52, 55, 58, 61, 64, 70, 161
HspAI GCGC 1 cut(s) 153
LmnI GCTCC 2 cut(s) 126, 137
LpnPI CCDG 1 cut(s) 161
Lsp1109I GCAGC 8 cut(s) 58, 61, 64, 67, 70, 73, 76, 141
MboII GAAGA 3 cut(s) 29, 40, 155
MluCI AATT 1 cut(s) 116
MnlI CCTC 4 cut(s) 117, 139, 208, 211
MwoI GCNNNNNNNGC 8 cut(s) 43, 52, 55, 58, 61, 64, 70, 161
PkrI GCNGC 8 cut(s) 48, 51, 54, 57, 60, 63, 66, 131
RsaI GTAC 1 cut(s) 83
RsaNI GTAC 1 cut(s) 82
SatI GCNGC 8 cut(s) 47, 50, 53, 56, 59, 62, 65, 130
SetI ASST 2 cut(s) 111, 134
SgeI CNNG 6 cut(s) 50, 133, 152, 184, 188, 192
Sse9I AATT 1 cut(s) 116
SsiI CCGC 1 cut(s) 162
TaaI ACNGT 1 cut(s) 81
TaqI TCGA 1 cut(s) 141
TasI AATT 1 cut(s) 116
TatI WGTACW 1 cut(s) 81
TseI GCWGC 8 cut(s) 46, 49, 52, 55, 58, 61, 64, 129
TspDTI ATGAA 1 cut(s) 41
XapI RAATTY 1 cut(s) 116
XcmI CCANNNNNNNNNTGG 1 cut(s) 172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.