RchiOBHm_Chr7g0192561

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0018439
Physical Location & Seq
Reverse (-)
10997946 .. 10998541
596 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 378 bp
ATGAGGAGATCAAGCTACGACCATGCCAGACACCAAACTGGCTCAGACTACTATTCTCATGTTAATAGGATGGCTAGAGCACCTAGTGTTCTGACTGACGTCCCTCACTACGGGGCCCTATTCAGCAACAACCCAGTGCCTTCAAATGAAGCCCATCGTGGTGGTCACTATGATCAGCACCAGCAGAGGCAGCACCACCAGCACAACCCTGAGCCTGGTAGGAATGTTGTTCAAGTGACTGAAACAGTGGCACAATGTGACAGGGATGGGAACTGCGTGGTTATTGAAGAAAAAGTTGATGTCGAAGCTGATGACTACATCCAGCAGAAGCACAAGGGGTTTGAGTTGTTCAAGTGGAAGACCTTCAAACCGCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

125

Amino Acids

14.55

Weight (kDa)

7.19

Isoelectric Point (pI)

51.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018439)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g06300
prunus_persica Prupe.5G165500_v2.0.a1 Prupe.6G157600_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0192561
rosa_laevigata RLG00000004352
rosa_roxburghii Rroxscaffold_3G00262930
rosa_rugosa Rorug07G0002100
rosa_samantha Rh7AG126700 Rh7BG128900 Rh7CG130700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 102
AccII CGCG 1 cut(s) 373
AciI CCGC 1 cut(s) 371
AcyI GRCGYC 1 cut(s) 99
AdeI CACNNNGTG 2 cut(s) 86, 257
AfiI CCNNNNNNNGG 2 cut(s) 110, 215
AgsI TTSAA 5 cut(s) 144, 233, 287, 352, 367
AjnI CCWGG 1 cut(s) 214
AluBI AGCT 2 cut(s) 15, 308
AluI AGCT 2 cut(s) 15, 308
Alw21I GWGCWC 1 cut(s) 82
AoxI GGCC 1 cut(s) 114
ApaI GGGCCC 1 cut(s) 118
ApeKI GCWGC 1 cut(s) 190
Asp700I GAANNNNTTC 1 cut(s) 362
AspS9I GGNCC 2 cut(s) 114, 115
BaeGI GKGCMC 1 cut(s) 118
BanII GRGCYC 1 cut(s) 118
BbsI GAAGAC 1 cut(s) 365
Bbv12I GWGCWC 1 cut(s) 82
BbvI GCAGC 1 cut(s) 202
BccI CCATC 3 cut(s) 64, 162, 260
BciT130I CCWGG 1 cut(s) 216
BclI TGATCA 1 cut(s) 172
BfaI CTAG 2 cut(s) 75, 84
BisI GCNGC 1 cut(s) 191
BlsI GCNGC 1 cut(s) 192
Bme1390I CCNGG 1 cut(s) 216
BmgT120I GGNCC 2 cut(s) 114, 115
BmiI GGNNCC 2 cut(s) 115, 116
BmrFI CCNGG 1 cut(s) 216
BmrI ACTGGG 1 cut(s) 128
BmuI ACTGGG 1 cut(s) 128
BoxI GACNNNNGTC 1 cut(s) 98
BpiI GAAGAC 1 cut(s) 365
Bpu10I CCTNAGC 1 cut(s) 210
BsaHI GRCGYC 1 cut(s) 99
Bsc4I CCNNNNNNNGG 2 cut(s) 110, 215
Bse1I ACTGG 2 cut(s) 43, 134
BseBI CCWGG 1 cut(s) 216
BseGI GGATG 3 cut(s) 75, 271, 318
BseLI CCNNNNNNNGG 2 cut(s) 110, 215
BseMII CTCAG 2 cut(s) 57, 201
BseNI ACTGG 2 cut(s) 43, 134
BseRI GAGGAG 1 cut(s) 19
BseSI GKGCMC 1 cut(s) 118
BseXI GCAGC 1 cut(s) 202
Bsh1236I CGCG 1 cut(s) 373
BshFI GGCC 1 cut(s) 116
BsiHKAI GWGCWC 1 cut(s) 82
BslFI GGGAC 1 cut(s) 86
BslI CCNNNNNNNGG 2 cut(s) 110, 215
BsmFI GGGAC 1 cut(s) 86
BsnI GGCC 1 cut(s) 116
Bsp120I GGGCCC 1 cut(s) 114
Bsp1286I GDGCHC 2 cut(s) 82, 118
Bsp143I GATC 2 cut(s) 8, 172
BspACI CCGC 1 cut(s) 371
BspANI GGCC 1 cut(s) 116
BspCNI CTCAG 2 cut(s) 56, 202
BspFNI CGCG 1 cut(s) 373
BspLI GGNNCC 2 cut(s) 115, 116
BsrI ACTGG 2 cut(s) 43, 134
BssMI GATC 2 cut(s) 8, 172
BssNI GRCGYC 1 cut(s) 99
Bst2UI CCWGG 1 cut(s) 216
Bst4CI ACNGT 1 cut(s) 247
BstACI GRCGYC 1 cut(s) 99
BstDEI CTNAG 2 cut(s) 43, 210
BstF5I GGATG 3 cut(s) 75, 271, 318
BstFNI CGCG 1 cut(s) 373
BstKTI GATC 2 cut(s) 11, 175
BstMBI GATC 2 cut(s) 8, 172
BstMWI GCNNNNNNNGC 2 cut(s) 190, 199
BstNI CCWGG 1 cut(s) 216
BstPAI GACNNNNGTC 1 cut(s) 98
BstSCI CCNGG 1 cut(s) 214
BstSLI GKGCMC 1 cut(s) 118
BstUI CGCG 1 cut(s) 373
BstV1I GCAGC 1 cut(s) 202
BstV2I GAAGAC 1 cut(s) 365
BstXI CCANNNNNNTGG 1 cut(s) 161
BsuRI GGCC 1 cut(s) 116
BtsCI GGATG 3 cut(s) 75, 271, 318
BtsIMutI CAGTG 2 cut(s) 141, 252
Cfr13I GGNCC 2 cut(s) 114, 115
CviAII CATG 2 cut(s) 23, 59
CviJI RGCY 7 cut(s) 15, 42, 74, 116, 152, 214, 308
CviKI_1 RGCY 7 cut(s) 15, 42, 74, 116, 152, 214, 308
DdeI CTNAG 2 cut(s) 43, 210
DpnI GATC 2 cut(s) 10, 174
DpnII GATC 2 cut(s) 8, 172
DraIII CACNNNGTG 2 cut(s) 86, 257
Eco24I GRGCYC 1 cut(s) 118
EcoO109I RGGNCCY 2 cut(s) 114, 115
EcoRII CCWGG 1 cut(s) 214
EcoT38I GRGCYC 1 cut(s) 118
FaeI CATG 2 cut(s) 26, 62
FaiI YATR 3 cut(s) 24, 60, 171
FaqI GGGAC 1 cut(s) 86
FatI CATG 2 cut(s) 22, 58
FbaI TGATCA 1 cut(s) 172
Fnu4HI GCNGC 1 cut(s) 191
FokI GGATG 3 cut(s) 82, 278, 305
FriOI GRGCYC 1 cut(s) 118
Fsp4HI GCNGC 1 cut(s) 191
FspBI CTAG 2 cut(s) 75, 84
GluI GCNGC 1 cut(s) 191
HaeIII GGCC 1 cut(s) 116
Hin1I GRCGYC 1 cut(s) 99
Hin1II CATG 2 cut(s) 26, 62
Hpy188I TCNGA 2 cut(s) 46, 93
HpyAV CCTTC 2 cut(s) 150, 373
HpyCH4III ACNGT 1 cut(s) 247
HpyCH4IV ACGT 1 cut(s) 99
HpyF10VI GCNNNNNNNGC 2 cut(s) 190, 199
HpyF3I CTNAG 2 cut(s) 43, 210
HpySE526I ACGT 1 cut(s) 99
Hsp92I GRCGYC 1 cut(s) 99
Hsp92II CATG 2 cut(s) 26, 62
Ksp22I TGATCA 1 cut(s) 172
Kzo9I GATC 2 cut(s) 8, 172
Lsp1109I GCAGC 1 cut(s) 202
MaeI CTAG 2 cut(s) 75, 84
MaeII ACGT 1 cut(s) 99
MaeIII GTNAC 3 cut(s) 164, 235, 257
MalI GATC 2 cut(s) 10, 174
MboI GATC 2 cut(s) 8, 172
MboII GAAGA 2 cut(s) 299, 370
MhlI GDGCHC 2 cut(s) 82, 118
MnlI CCTC 2 cut(s) 114, 180
MroXI GAANNNNTTC 1 cut(s) 362
MseI TTAA 1 cut(s) 63
MslI CAYNNNNRTG 1 cut(s) 159
MspR9I CCNGG 1 cut(s) 216
MvaI CCWGG 1 cut(s) 216
MvnI CGCG 1 cut(s) 373
MwoI GCNNNNNNNGC 2 cut(s) 190, 199
NdeII GATC 2 cut(s) 8, 172
NlaIII CATG 2 cut(s) 26, 62
NlaIV GGNNCC 2 cut(s) 115, 116
NmuCI GTSAC 3 cut(s) 164, 235, 257
PdmI GAANNNNTTC 1 cut(s) 362
PkrI GCNGC 1 cut(s) 192
PshAI GACNNNNGTC 1 cut(s) 98
Psp6I CCWGG 1 cut(s) 214
PspGI CCWGG 1 cut(s) 214
PspN4I GGNNCC 2 cut(s) 115, 116
PspOMI GGGCCC 1 cut(s) 114
PspPI GGNCC 2 cut(s) 114, 115
RseI CAYNNNNRTG 1 cut(s) 159
SaqAI TTAA 1 cut(s) 63
SatI GCNGC 1 cut(s) 191
Sau3AI GATC 2 cut(s) 8, 172
Sau96I GGNCC 2 cut(s) 114, 115
ScrFI CCNGG 1 cut(s) 216
SduI GDGCHC 2 cut(s) 82, 118
SetI ASST 5 cut(s) 17, 85, 102, 310, 365
SmiMI CAYNNNNRTG 1 cut(s) 159
SsiI CCGC 1 cut(s) 371
SspMI CTAG 2 cut(s) 75, 84
StyD4I CCNGG 1 cut(s) 214
TaaI ACNGT 1 cut(s) 247
TaiI ACGT 1 cut(s) 102
TaqI TCGA 1 cut(s) 303
Tru1I TTAA 1 cut(s) 63
Tru9I TTAA 1 cut(s) 63
TscAI CASTG 2 cut(s) 141, 252
TseFI GTSAC 3 cut(s) 164, 235, 257
TseI GCWGC 1 cut(s) 190
Tsp45I GTSAC 3 cut(s) 164, 235, 257
TspDTI ATGAA 1 cut(s) 162
TspRI CASTG 2 cut(s) 141, 252
XmnI GAANNNNTTC 1 cut(s) 362
XspI CTAG 2 cut(s) 75, 84
ZraI GACGTC 1 cut(s) 100
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.