RchiOBHm_Chr7g0202021

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0017557
Physical Location & Seq
Reverse (-)
19690996 .. 19694346
3351 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 546 bp
ATGGGTGATTTTAGTATTCAGATTAGCACCAATTTGGTTAATAAGCTTGCTGATGACACTGAGAAATCAAAGAAGAAAACCAGAAGAACTAAACCTAAGGTACCCCGAGAGCCTCAGCAGCCCCAACCGAAAATAAACCAAAAGACGGTTTCTGCTGATTCTGAACCATTCAAAGGGTCAAGTGCTAAAGGATGGCCTATCCAGCCTCCTCTATACATGCCCGTACCCCCTCCTTCAGAGTCTACCAATGCAGACTTGGACGCAATCAGATCTGTTCTCCAACAGAGTGAGAAAGTCGTGGAGCGTTTGAAGAAGCAGGAGGAGAACATGGCACAGGAGGTGACACAAAGAGCAAAGGAGCTTCGTGACAAGGAGTTCAAGCTCCCATACCAGAAGCCTATGCCTTGCTTAGCTGAGAAAGATGCTTGCGTGGATTGCTACAAGGAGCATGGGAAGGAGGATCCTCTCAAGTGTGCTGGTCTTGTTAACAGTTATGCAGATTGTGCTCGCAAAGTTAGGCAGCAGGTCAGTTCGGGAAACAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

181

Amino Acids

20.4

Weight (kDa)

9.21

Isoelectric Point (pI)

54.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017557)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G12340
fragaria_vesca FvH4_5g00490
malus_domestica MD04G1080500.v1.1
prunus_persica Prupe.4G260700_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0202021
rosa_laevigata RLG00000003633
rosa_roxburghii Rroxscaffold_3G00254940
rosa_samantha Rh7AG194600 Rh7BG196100 Rh7CG205900 Rh7DG201300
rosa_wichuraiana Rw7G017050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 514
Acc65I GGTACC 1 cut(s) 100
AccB1I GGYRCC 1 cut(s) 100
AccI GTMKAC 1 cut(s) 242
AclWI GGATC 2 cut(s) 455, 468
AcuI CTGAAG 1 cut(s) 219
AfaI GTAC 2 cut(s) 102, 225
AfiI CCNNNNNNNGG 2 cut(s) 145, 173
AgsI TTSAA 3 cut(s) 172, 310, 379
AluBI AGCT 4 cut(s) 46, 361, 382, 413
AluI AGCT 4 cut(s) 46, 361, 382, 413
Alw21I GWGCWC 1 cut(s) 508
AlwI GGATC 2 cut(s) 455, 468
Ama87I CYCGRG 1 cut(s) 105
AoxI GGCC 1 cut(s) 194
ApeKI GCWGC 2 cut(s) 118, 520
Asp718I GGTACC 1 cut(s) 100
AsuHPI GGTGA 2 cut(s) 17, 352
AvaI CYCGRG 1 cut(s) 105
AxyI CCTNAGG 1 cut(s) 96
BamHI GGATCC 1 cut(s) 460
BanI GGYRCC 1 cut(s) 100
Bbv12I GWGCWC 1 cut(s) 508
BbvCI CCTCAGC 1 cut(s) 114
BbvI GCAGC 2 cut(s) 130, 532
BccI CCATC 1 cut(s) 186
BfuAI ACCTGC 1 cut(s) 514
BglII AGATCT 1 cut(s) 269
BisI GCNGC 2 cut(s) 119, 521
BlpI GCTNAGC 1 cut(s) 409
BlsI GCNGC 2 cut(s) 120, 522
BmeT110I CYCGRG 1 cut(s) 105
BmiI GGNNCC 2 cut(s) 102, 462
BmsI GCATC 1 cut(s) 412
Bpu10I CCTNAGC 1 cut(s) 114
Bpu1102I GCTNAGC 1 cut(s) 409
BpuEI CTTGAG 1 cut(s) 452
Bsc4I CCNNNNNNNGG 2 cut(s) 145, 173
Bse21I CCTNAGG 1 cut(s) 96
BseGI GGATG 1 cut(s) 197
BseLI CCNNNNNNNGG 2 cut(s) 145, 173
BseMII CTCAG 3 cut(s) 51, 128, 405
BseRI GAGGAG 2 cut(s) 198, 335
BseXI GCAGC 2 cut(s) 130, 532
BshFI GGCC 1 cut(s) 196
BshNI GGYRCC 1 cut(s) 100
BsiHKAI GWGCWC 1 cut(s) 508
BsiHKCI CYCGRG 1 cut(s) 105
BslI CCNNNNNNNGG 2 cut(s) 145, 173
BsnI GGCC 1 cut(s) 196
BsoBI CYCGRG 1 cut(s) 105
Bsp1286I GDGCHC 1 cut(s) 508
Bsp143I GATC 2 cut(s) 269, 460
Bsp1720I GCTNAGC 1 cut(s) 409
BspANI GGCC 1 cut(s) 196
BspCNI CTCAG 3 cut(s) 52, 127, 406
BspLI GGNNCC 2 cut(s) 102, 462
BspMI ACCTGC 1 cut(s) 514
BspPI GGATC 2 cut(s) 455, 468
BspT107I GGYRCC 1 cut(s) 100
BssMI GATC 2 cut(s) 269, 460
Bst4CI ACNGT 2 cut(s) 148, 491
BstAPI GCANNNNNTGC 1 cut(s) 503
BstC8I GCNNGC 3 cut(s) 48, 427, 508
BstDEI CTNAG 5 cut(s) 60, 96, 114, 409, 414
BstF5I GGATG 1 cut(s) 197
BstKTI GATC 2 cut(s) 272, 463
BstMBI GATC 2 cut(s) 269, 460
BstMWI GCNNNNNNNGC 4 cut(s) 118, 202, 435, 503
BstNSI RCATGY 1 cut(s) 220
BstV1I GCAGC 2 cut(s) 130, 532
BstX2I RGATCY 2 cut(s) 269, 460
BstYI RGATCY 2 cut(s) 269, 460
Bsu36I CCTNAGG 1 cut(s) 96
BsuRI GGCC 1 cut(s) 196
BtsCI GGATG 1 cut(s) 197
BtsIMutI CAGTG 1 cut(s) 57
BveI ACCTGC 1 cut(s) 514
Cac8I GCNNGC 3 cut(s) 48, 427, 508
CseI GACGC 1 cut(s) 269
Csp6I GTAC 2 cut(s) 101, 224
CviAII CATG 3 cut(s) 217, 328, 449
CviJI RGCY 9 cut(s) 46, 112, 121, 196, 205, 361, 382, 397, 413
CviKI_1 RGCY 9 cut(s) 46, 112, 121, 196, 205, 361, 382, 397, 413
CviQI GTAC 2 cut(s) 101, 224
DdeI CTNAG 5 cut(s) 60, 96, 114, 409, 414
DpnI GATC 2 cut(s) 271, 462
DpnII GATC 2 cut(s) 269, 460
Eco57I CTGAAG 1 cut(s) 219
Eco81I CCTNAGG 1 cut(s) 96
Eco88I CYCGRG 1 cut(s) 105
FaeI CATG 3 cut(s) 220, 331, 452
FaiI YATR 7 cut(s) 214, 218, 329, 388, 401, 450, 495
FatI CATG 3 cut(s) 216, 327, 448
FblI GTMKAC 1 cut(s) 242
Fnu4HI GCNGC 2 cut(s) 119, 521
FokI GGATG 1 cut(s) 204
Fsp4HI GCNGC 2 cut(s) 119, 521
GluI GCNGC 2 cut(s) 119, 521
HaeIII GGCC 1 cut(s) 196
HgaI GACGC 1 cut(s) 269
Hin1II CATG 3 cut(s) 220, 331, 452
HincII GTYRAC 1 cut(s) 487
HindII GTYRAC 1 cut(s) 487
HindIII AAGCTT 1 cut(s) 44
HinfI GANTC 2 cut(s) 158, 239
HpaI GTTAAC 1 cut(s) 487
HphI GGTGA 2 cut(s) 17, 352
Hpy166II GTNNAC 2 cut(s) 243, 487
Hpy188I TCNGA 4 cut(s) 21, 163, 238, 269
Hpy188III TCNNGA 2 cut(s) 365, 534
Hpy8I GTNNAC 2 cut(s) 243, 487
HpyAV CCTTC 2 cut(s) 243, 448
HpyCH4III ACNGT 2 cut(s) 148, 491
HpyCH4V TGCA 2 cut(s) 251, 497
HpyF10VI GCNNNNNNNGC 4 cut(s) 118, 202, 435, 503
HpyF3I CTNAG 5 cut(s) 60, 96, 114, 409, 414
Hsp92II CATG 3 cut(s) 220, 331, 452
KpnI GGTACC 1 cut(s) 104
KspAI GTTAAC 1 cut(s) 487
Kzo9I GATC 2 cut(s) 269, 460
LmnI GCTCC 4 cut(s) 301, 358, 387, 445
LpnPI CCDG 7 cut(s) 94, 215, 302, 320, 404, 462, 509
Lsp1109I GCAGC 2 cut(s) 130, 532
LweI GCATC 1 cut(s) 412
MaeIII GTNAC 2 cut(s) 340, 365
MalI GATC 2 cut(s) 271, 462
MboI GATC 2 cut(s) 269, 460
MboII GAAGA 3 cut(s) 85, 96, 322
MflI RGATCY 2 cut(s) 269, 460
MhlI GDGCHC 1 cut(s) 508
MluCI AATT 1 cut(s) 31
MlyI GAGTC 1 cut(s) 248
MmeI TCCRAC 1 cut(s) 304
MnlI CCTC 8 cut(s) 123, 216, 219, 240, 313, 331, 451, 474
MseI TTAA 2 cut(s) 39, 486
MwoI GCNNNNNNNGC 4 cut(s) 118, 202, 435, 503
NdeII GATC 2 cut(s) 269, 460
NlaIII CATG 3 cut(s) 220, 331, 452
NlaIV GGNNCC 2 cut(s) 102, 462
NmuCI GTSAC 2 cut(s) 340, 365
NspI RCATGY 1 cut(s) 220
PfeI GAWTC 1 cut(s) 158
PkrI GCNGC 2 cut(s) 120, 522
PleI GAGTC 1 cut(s) 247
PpsI GAGTC 1 cut(s) 247
PspN4I GGNNCC 2 cut(s) 102, 462
PsuI RGATCY 2 cut(s) 269, 460
RsaI GTAC 2 cut(s) 102, 225
RsaNI GTAC 2 cut(s) 101, 224
SaqAI TTAA 2 cut(s) 39, 486
SatI GCNGC 2 cut(s) 119, 521
Sau3AI GATC 2 cut(s) 269, 460
SchI GAGTC 1 cut(s) 248
SduI GDGCHC 1 cut(s) 508
SetI ASST 8 cut(s) 48, 97, 102, 342, 363, 384, 415, 528
SfaNI GCATC 1 cut(s) 412
SmlI CTYRAG 1 cut(s) 467
SmoI CTYRAG 1 cut(s) 467
Sse9I AATT 1 cut(s) 31
TaaI ACNGT 2 cut(s) 148, 491
TasI AATT 1 cut(s) 31
TfiI GAWTC 1 cut(s) 158
Tru1I TTAA 2 cut(s) 39, 486
Tru9I TTAA 2 cut(s) 39, 486
TscAI CASTG 1 cut(s) 64
TseFI GTSAC 2 cut(s) 340, 365
TseI GCWGC 2 cut(s) 118, 520
Tsp45I GTSAC 2 cut(s) 340, 365
TspRI CASTG 1 cut(s) 64
XceI RCATGY 1 cut(s) 220
XcmI CCANNNNNNNNNTGG 1 cut(s) 253
XmiI GTMKAC 1 cut(s) 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.