RchiOBHm_Chr7g0209411

Pre-mRNA-splicing factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0019038
Physical Location & Seq
Forward (+)
26790656 .. 26792338
1683 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 408 bp
ATGTTAATTAATGGTCTGCACGTGGTAGTGACTTTGTGCATGGCTCTTGGACCAGTGGACTTTACCTTATTGGTCATTACCTCTAAAAACTTTGCCCTCTTTTCTTTTCTACAATTATATCCAATAATGGCGAAGAGCATACATGGAACAAAACCAGAGAAACTGGTGCCGAAAATTGTTCGGACCAAGATACGCGTGATGAGTTATTGGAAGGAGCATCCCTTGGCCTTTGCTTTGACACATATGGACGAGGTTGTGGAGGAGCTTCTGACGAGTGAGTACTGGTGTGACATTTTCTTGCCGAGGAATAAGAAGAGAGAGACTATGTGGTCGGCTGGTTGCTTGGTTTGTTGGAACCTAGGAAAAGTACTTTGGAGGACGAAGGCTTGGAGGAGGAGAGGGTGTTGA

Protein Analysis

135

Amino Acids

15.73

Weight (kDa)

9.6

Isoelectric Point (pI)

38.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PRP38 PF03371 76 - 109 2.9e-06 PRP38 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019038)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0209371 RchiOBHm_Chr7g0209411
rosa_multiflora Rmu_sc0035160.1_g000001 Rmu_sc0035161.1_g000001 Rmu_ssc0000038.1_g000014
rosa_samantha Rh7AG245900 Rh7AG246000 Rh7CG261500
rosa_wichuraiana Rw7G020820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 328
AccB1I GGYRCC 1 cut(s) 166
AccII CGCG 1 cut(s) 195
AcvI CACGTG 1 cut(s) 22
AfaI GTAC 2 cut(s) 281, 369
AflIII ACRYGT 1 cut(s) 193
AjuI GAANNNNNNNTTGG 2 cut(s) 355, 387
AluBI AGCT 1 cut(s) 265
AluI AGCT 1 cut(s) 265
Alw26I GTCTC 1 cut(s) 314
AoxI GGCC 1 cut(s) 225
AseI ATTAAT 1 cut(s) 9
AspA2I CCTAGG 1 cut(s) 358
AspS9I GGNCC 2 cut(s) 50, 183
AvaII GGWCC 2 cut(s) 50, 183
AvrII CCTAGG 1 cut(s) 358
BanI GGYRCC 1 cut(s) 166
BbrPI CACGTG 1 cut(s) 22
BcoDI GTCTC 1 cut(s) 314
BfaI CTAG 1 cut(s) 359
BlnI CCTAGG 1 cut(s) 358
BmcAI AGTACT 2 cut(s) 281, 369
Bme18I GGWCC 2 cut(s) 50, 183
BmgT120I GGNCC 2 cut(s) 50, 183
BmiI GGNNCC 2 cut(s) 168, 356
BmsI GCATC 1 cut(s) 226
BsaAI YACGTR 1 cut(s) 22
BsaJI CCNNGG 3 cut(s) 222, 302, 358
BsaXI ACNNNNNCTCC 1 cut(s) 388
Bse1I ACTGG 3 cut(s) 53, 168, 287
BseDI CCNNGG 3 cut(s) 222, 302, 358
BseGI GGATG 1 cut(s) 217
BseNI ACTGG 3 cut(s) 53, 168, 287
BseRI GAGGAG 2 cut(s) 275, 406
Bsh1236I CGCG 1 cut(s) 195
BshFI GGCC 1 cut(s) 227
BshNI GGYRCC 1 cut(s) 166
BsmAI GTCTC 1 cut(s) 314
BsnI GGCC 1 cut(s) 227
BspANI GGCC 1 cut(s) 227
BspFNI CGCG 1 cut(s) 195
BspLI GGNNCC 2 cut(s) 168, 356
BspQI GCTCTTC 1 cut(s) 128
BspT107I GGYRCC 1 cut(s) 166
BsrI ACTGG 3 cut(s) 53, 168, 287
BssECI CCNNGG 3 cut(s) 222, 302, 358
BssT1I CCWWGG 2 cut(s) 222, 358
Bst6I CTCTTC 2 cut(s) 128, 308
BstBAI YACGTR 1 cut(s) 22
BstF5I GGATG 1 cut(s) 217
BstFNI CGCG 1 cut(s) 195
BstMAI GTCTC 1 cut(s) 314
BstUI CGCG 1 cut(s) 195
BsuRI GGCC 1 cut(s) 227
BtsCI GGATG 1 cut(s) 217
BtsIMutI CAGTG 1 cut(s) 60
Cfr13I GGNCC 2 cut(s) 50, 183
Csp6I GTAC 2 cut(s) 280, 368
CviAII CATG 2 cut(s) 40, 143
CviJI RGCY 5 cut(s) 44, 227, 265, 335, 386
CviKI_1 RGCY 5 cut(s) 44, 227, 265, 335, 386
CviQI GTAC 2 cut(s) 280, 368
DrdI GACNNNNNNGTC 1 cut(s) 328
DseDI GACNNNNNNGTC 1 cut(s) 328
Eam1104I CTCTTC 2 cut(s) 128, 308
EarI CTCTTC 2 cut(s) 128, 308
Eco130I CCWWGG 2 cut(s) 222, 358
Eco47I GGWCC 2 cut(s) 50, 183
Eco72I CACGTG 1 cut(s) 22
EcoT14I CCWWGG 2 cut(s) 222, 358
ErhI CCWWGG 2 cut(s) 222, 358
FaeI CATG 2 cut(s) 43, 146
FaiI YATR 7 cut(s) 41, 118, 140, 144, 243, 245, 326
FatI CATG 2 cut(s) 39, 142
FauNDI CATATG 1 cut(s) 243
FokI GGATG 1 cut(s) 204
FspBI CTAG 1 cut(s) 359
HaeIII GGCC 1 cut(s) 227
Hin1II CATG 2 cut(s) 43, 146
Hpy166II GTNNAC 1 cut(s) 58
Hpy188I TCNGA 2 cut(s) 183, 270
Hpy8I GTNNAC 1 cut(s) 58
HpyAV CCTTC 2 cut(s) 205, 376
HpyCH4IV ACGT 1 cut(s) 21
HpyCH4V TGCA 2 cut(s) 19, 39
HpySE526I ACGT 1 cut(s) 21
Hsp92II CATG 2 cut(s) 43, 146
LguI GCTCTTC 1 cut(s) 128
LmnI GCTCC 2 cut(s) 214, 262
LpnPI CCDG 5 cut(s) 66, 149, 168, 268, 321
LweI GCATC 1 cut(s) 226
MaeI CTAG 1 cut(s) 359
MaeII ACGT 1 cut(s) 21
MaeIII GTNAC 2 cut(s) 28, 287
MboII GAAGA 2 cut(s) 145, 325
MluCI AATT 3 cut(s) 6, 113, 174
MluI ACGCGT 1 cut(s) 193
MmeI TCCRAC 1 cut(s) 332
MnlI CCTC 9 cut(s) 91, 107, 244, 253, 297, 369, 384, 387, 392
MseI TTAA 2 cut(s) 5, 9
MvnI CGCG 1 cut(s) 195
NdeI CATATG 1 cut(s) 243
NlaIII CATG 2 cut(s) 43, 146
NlaIV GGNNCC 2 cut(s) 168, 356
NmeAIII GCCGAG 1 cut(s) 327
NmuCI GTSAC 2 cut(s) 28, 287
PacI TTAATTAA 1 cut(s) 9
PciSI GCTCTTC 1 cut(s) 128
PmaCI CACGTG 1 cut(s) 22
PmlI CACGTG 1 cut(s) 22
Ppu21I YACGTR 1 cut(s) 22
PshBI ATTAAT 1 cut(s) 9
PspCI CACGTG 1 cut(s) 22
PspN4I GGNNCC 2 cut(s) 168, 356
PspPI GGNCC 2 cut(s) 50, 183
RsaI GTAC 2 cut(s) 281, 369
RsaNI GTAC 2 cut(s) 280, 368
SapI GCTCTTC 1 cut(s) 128
SaqAI TTAA 2 cut(s) 5, 9
Sau96I GGNCC 2 cut(s) 50, 183
ScaI AGTACT 2 cut(s) 281, 369
SetI ASST 6 cut(s) 24, 68, 83, 255, 267, 360
SfaNI GCATC 1 cut(s) 226
SinI GGWCC 2 cut(s) 50, 183
Sse9I AATT 3 cut(s) 6, 113, 174
SspMI CTAG 1 cut(s) 359
StyI CCWWGG 2 cut(s) 222, 358
TaiI ACGT 1 cut(s) 24
TasI AATT 3 cut(s) 6, 113, 174
TatI WGTACW 2 cut(s) 279, 367
Tru1I TTAA 2 cut(s) 5, 9
Tru9I TTAA 2 cut(s) 5, 9
TscAI CASTG 1 cut(s) 60
TseFI GTSAC 2 cut(s) 28, 287
Tsp45I GTSAC 2 cut(s) 28, 287
TspRI CASTG 1 cut(s) 60
VpaK11BI GGWCC 2 cut(s) 50, 183
VspI ATTAAT 1 cut(s) 9
XmaJI CCTAGG 1 cut(s) 358
XspI CTAG 1 cut(s) 359
ZrmI AGTACT 2 cut(s) 281, 369
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.