Rmu_sc0035161.1_g000001

Pre-mRNA-splicing factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0035161.1
OG0019038
Physical Location & Seq
Reverse (-)
715 .. 1543
829 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0035161.1_g000001.1.cds

Sequence Viewer

Length: 672 bp
atgcatggaacaaagccagagaacctgttgccaaatatcttccggaccaagatacaagatatgagatactggaaggagcattgcttcgggttgacggccgaaaccctactggataaagccatagaactggatcgcatagatgcttcagatccaactgagaaggaactcgtgctagagatcatcaagaacgagcccttcaaatacgtccaggtactcggagcattttactggaggctcacggctacagagattgatgtctaccgatacctggagcccttgtacaatgactatcgaaagctgaggaggaaattgaccgatggaggctttgctttgacacatgtggagatgagaaaaagtactttggaggacgaaggcttggaggaggagactcaggagagggtgttgaacgaatattatcaaactaggaggaggaggaggaggatgaggagtacgagtagggaaagagatgaggctaggcgccatgaacgggtccgggaaagagacaactatcaccgtctacttcgtcaaaatagagaccttcccagctttaggaggggatgtcaacttcctagtccaggtaggaatcacgagaatcattgtgaggatgggatagacattgctgcatccaacaggatccgggcagctcttgggatgaaccccctcgaggtgtag

Protein Analysis

223

Amino Acids

26.76

Weight (kDa)

8.72

Isoelectric Point (pI)

55.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019038)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0209371 RchiOBHm_Chr7g0209411
rosa_multiflora Rmu_sc0035160.1_g000001 Rmu_sc0035161.1_g000001 Rmu_ssc0000038.1_g000014
rosa_samantha Rh7AG245900 Rh7AG246000 Rh7CG261500
rosa_wichuraiana Rw7G020820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 662
AccB1I GGYRCC 1 cut(s) 477
AccI GTMKAC 2 cut(s) 258, 517
AccIII TCCGGA 1 cut(s) 42
AclWI GGATC 4 cut(s) 138, 143, 628, 641
AcoI YGGCCR 1 cut(s) 96
AcuI CTGAAG 1 cut(s) 129
AcyI GRCGYC 1 cut(s) 478
AfaI GTAC 4 cut(s) 213, 281, 358, 451
AfiI CCNNNNNNNGG 5 cut(s) 268, 487, 549, 575, 664
AflIII ACRYGT 1 cut(s) 337
AgsI TTSAA 2 cut(s) 199, 406
AjnI CCWGG 3 cut(s) 207, 267, 574
AluBI AGCT 3 cut(s) 298, 546, 644
AluI AGCT 3 cut(s) 298, 546, 644
Alw26I GTCTC 3 cut(s) 380, 495, 528
AlwI GGATC 4 cut(s) 138, 143, 628, 641
Ama87I CYCGRG 1 cut(s) 662
Aor13HI TCCGGA 1 cut(s) 42
AoxI GGCC 1 cut(s) 96
ApeKI GCWGC 2 cut(s) 620, 641
AspLEI GCGC 1 cut(s) 480
AspS9I GGNCC 2 cut(s) 45, 490
AsuC2I CCSGG 2 cut(s) 494, 638
AsuHPI GGTGA 1 cut(s) 503
AvaI CYCGRG 1 cut(s) 662
AvaII GGWCC 2 cut(s) 45, 490
BamHI GGATCC 1 cut(s) 633
BanI GGYRCC 1 cut(s) 477
BanII GRGCYC 2 cut(s) 195, 276
BauI CACGAG 2 cut(s) 167, 587
BbvCI CCTCAGC 1 cut(s) 299
BbvI GCAGC 2 cut(s) 607, 653
BccI CCATC 2 cut(s) 311, 599
BceAI ACGGC 2 cut(s) 111, 255
BciT130I CCWGG 3 cut(s) 209, 269, 576
BcnI CCSGG 2 cut(s) 494, 638
BcoDI GTCTC 3 cut(s) 380, 495, 528
BfaI CTAG 4 cut(s) 173, 423, 474, 570
BfmI CTRYAG 1 cut(s) 243
BfoI RGCGCY 1 cut(s) 481
BisI GCNGC 2 cut(s) 621, 642
BlsI GCNGC 2 cut(s) 622, 643
BmcAI AGTACT 1 cut(s) 358
Bme1390I CCNGG 5 cut(s) 209, 269, 494, 576, 638
Bme18I GGWCC 2 cut(s) 45, 490
BmeT110I CYCGRG 1 cut(s) 662
BmgT120I GGNCC 2 cut(s) 45, 490
BmiI GGNNCC 4 cut(s) 273, 479, 491, 635
BmrFI CCNGG 5 cut(s) 209, 269, 494, 576, 638
BmsI GCATC 2 cut(s) 130, 632
BpmI CTGGAG 2 cut(s) 250, 290
Bpu10I CCTNAGC 1 cut(s) 299
BpuMI CCSGG 2 cut(s) 494, 638
BsaHI GRCGYC 1 cut(s) 478
BsaI GGTCTC 1 cut(s) 528
BsaWI WCCGGW 1 cut(s) 42
BsaXI ACNNNNNCTCC 8 cut(s) 263, 293, 386, 416, 439, 469, 544, 574
Bsc4I CCNNNNNNNGG 5 cut(s) 268, 487, 549, 575, 664
Bse1I ACTGG 4 cut(s) 74, 114, 132, 233
Bse3DI GCAATG 2 cut(s) 79, 615
BseAI TCCGGA 1 cut(s) 42
BseBI CCWGG 3 cut(s) 209, 269, 576
BseGI GGATG 5 cut(s) 447, 563, 610, 623, 657
BseLI CCNNNNNNNGG 5 cut(s) 268, 487, 549, 575, 664
BseMI GCAATG 2 cut(s) 79, 615
BseMII CTCAG 3 cut(s) 147, 290, 404
BseNI ACTGG 4 cut(s) 74, 114, 132, 233
BseRI GAGGAG 8 cut(s) 316, 395, 398, 442, 445, 448, 451, 460
BseX3I CGGCCG 1 cut(s) 96
BseXI GCAGC 2 cut(s) 607, 653
BseYI CCCAGC 1 cut(s) 542
Bsh1285I CGRYCG 1 cut(s) 99
BshFI GGCC 1 cut(s) 98
BshNI GGYRCC 1 cut(s) 477
BsiEI CGRYCG 1 cut(s) 99
BsiHKCI CYCGRG 1 cut(s) 662
BsiSI CCGG 3 cut(s) 43, 493, 637
BslI CCNNNNNNNGG 5 cut(s) 268, 487, 549, 575, 664
BsmAI GTCTC 3 cut(s) 380, 495, 528
BsnI GGCC 1 cut(s) 98
Bso31I GGTCTC 1 cut(s) 528
BsoBI CYCGRG 1 cut(s) 662
Bsp1286I GDGCHC 2 cut(s) 195, 276
Bsp13I TCCGGA 1 cut(s) 42
Bsp1407I TGTACA 1 cut(s) 279
Bsp143I GATC 4 cut(s) 130, 148, 177, 633
BspANI GGCC 1 cut(s) 98
BspCNI CTCAG 3 cut(s) 148, 291, 403
BspEI TCCGGA 1 cut(s) 42
BspLI GGNNCC 4 cut(s) 273, 479, 491, 635
BspPI GGATC 4 cut(s) 138, 143, 628, 641
BspT107I GGYRCC 1 cut(s) 477
BspTNI GGTCTC 1 cut(s) 528
BsrDI GCAATG 2 cut(s) 79, 615
BsrGI TGTACA 1 cut(s) 279
BsrI ACTGG 4 cut(s) 74, 114, 132, 233
BssMI GATC 4 cut(s) 130, 148, 177, 633
BssNI GRCGYC 1 cut(s) 478
BssSI CACGAG 2 cut(s) 167, 587
Bst2BI CACGAG 2 cut(s) 167, 587
Bst2UI CCWGG 3 cut(s) 209, 269, 576
Bst4CI ACNGT 1 cut(s) 515
BstACI GRCGYC 1 cut(s) 478
BstAUI TGTACA 1 cut(s) 279
BstDEI CTNAG 3 cut(s) 156, 299, 390
BstENI CCTNNNNNAGG 1 cut(s) 573
BstF5I GGATG 5 cut(s) 447, 563, 610, 623, 657
BstH2I RGCGCY 1 cut(s) 481
BstHHI GCGC 1 cut(s) 480
BstKTI GATC 4 cut(s) 133, 151, 180, 636
BstMAI GTCTC 3 cut(s) 380, 495, 528
BstMBI GATC 4 cut(s) 130, 148, 177, 633
BstMCI CGRYCG 1 cut(s) 99
BstNI CCWGG 3 cut(s) 209, 269, 576
BstNSI RCATGY 1 cut(s) 341
BstSCI CCNGG 5 cut(s) 207, 267, 492, 574, 636
BstSFI CTRYAG 1 cut(s) 243
BstV1I GCAGC 2 cut(s) 607, 653
BstX2I RGATCY 2 cut(s) 148, 633
BstXI CCANNNNNNTGG 1 cut(s) 127
BstYI RGATCY 2 cut(s) 148, 633
BstZI CGGCCG 1 cut(s) 96
BsuRI GGCC 1 cut(s) 98
BtsCI GGATG 5 cut(s) 447, 563, 610, 623, 657
CfoI GCGC 1 cut(s) 480
Cfr13I GGNCC 2 cut(s) 45, 490
Csp6I GTAC 4 cut(s) 212, 280, 357, 450
CviAII CATG 3 cut(s) 5, 338, 482
CviQI GTAC 4 cut(s) 212, 280, 357, 450
DdeI CTNAG 3 cut(s) 156, 299, 390
DinI GGCGCC 1 cut(s) 479
DpnI GATC 4 cut(s) 132, 150, 179, 635
DpnII GATC 4 cut(s) 130, 148, 177, 633
EaeI YGGCCR 1 cut(s) 96
EagI CGGCCG 1 cut(s) 96
EclXI CGGCCG 1 cut(s) 96
Eco24I GRGCYC 2 cut(s) 195, 276
Eco31I GGTCTC 1 cut(s) 528
Eco47I GGWCC 2 cut(s) 45, 490
Eco52I CGGCCG 1 cut(s) 96
Eco57I CTGAAG 1 cut(s) 129
Eco88I CYCGRG 1 cut(s) 662
EcoNI CCTNNNNNAGG 1 cut(s) 573
EcoRII CCWGG 3 cut(s) 207, 267, 574
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 2 cut(s) 195, 276
EgeI GGCGCC 1 cut(s) 479
EheI GGCGCC 1 cut(s) 479
FaeI CATG 3 cut(s) 8, 341, 485
FaiI YATR 6 cut(s) 6, 62, 122, 137, 339, 483
FatI CATG 3 cut(s) 4, 337, 481
FblI GTMKAC 2 cut(s) 258, 517
Fnu4HI GCNGC 2 cut(s) 621, 642
FokI GGATG 5 cut(s) 454, 570, 610, 617, 664
FriOI GRGCYC 2 cut(s) 195, 276
Fsp4HI GCNGC 2 cut(s) 621, 642
FspBI CTAG 4 cut(s) 173, 423, 474, 570
GlaI GCGC 1 cut(s) 479
GluI GCNGC 2 cut(s) 621, 642
GsaI CCCAGC 1 cut(s) 546
GsuI CTGGAG 2 cut(s) 250, 290
HaeII RGCGCY 1 cut(s) 481
HaeIII GGCC 1 cut(s) 98
HapII CCGG 3 cut(s) 43, 493, 637
HhaI GCGC 1 cut(s) 480
Hin1I GRCGYC 1 cut(s) 478
Hin1II CATG 3 cut(s) 8, 341, 485
Hin6I GCGC 1 cut(s) 478
HinP1I GCGC 1 cut(s) 478
HincII GTYRAC 2 cut(s) 93, 563
HindII GTYRAC 2 cut(s) 93, 563
HinfI GANTC 3 cut(s) 388, 583, 592
HpaII CCGG 3 cut(s) 43, 493, 637
HphI GGTGA 1 cut(s) 503
Hpy166II GTNNAC 4 cut(s) 93, 259, 518, 563
Hpy188I TCNGA 2 cut(s) 148, 218
Hpy188III TCNNGA 4 cut(s) 43, 184, 392, 587
Hpy8I GTNNAC 4 cut(s) 93, 259, 518, 563
HpyAV CCTTC 5 cut(s) 67, 154, 205, 365, 548
HpyCH4III ACNGT 1 cut(s) 515
HpyCH4IV ACGT 1 cut(s) 204
HpyCH4V TGCA 2 cut(s) 4, 623
HpyF3I CTNAG 3 cut(s) 156, 299, 390
HpySE526I ACGT 1 cut(s) 204
Hsp92I GRCGYC 1 cut(s) 478
Hsp92II CATG 3 cut(s) 8, 341, 485
HspAI GCGC 1 cut(s) 478
KasI GGCGCC 1 cut(s) 477
Kpn2I TCCGGA 1 cut(s) 42
Kzo9I GATC 4 cut(s) 130, 148, 177, 633
LmnI GCTCC 3 cut(s) 76, 218, 271
Lsp1109I GCAGC 2 cut(s) 607, 653
LweI GCATC 2 cut(s) 130, 632
MaeI CTAG 4 cut(s) 173, 423, 474, 570
MaeII ACGT 1 cut(s) 204
MalI GATC 4 cut(s) 132, 150, 179, 635
MboI GATC 4 cut(s) 130, 148, 177, 633
MboII GAAGA 1 cut(s) 31
MflI RGATCY 2 cut(s) 148, 633
MhlI GDGCHC 2 cut(s) 195, 276
MluCI AATT 1 cut(s) 308
Mly113I GGCGCC 1 cut(s) 478
MlyI GAGTC 1 cut(s) 382
MmeI TCCRAC 2 cut(s) 176, 651
Mph1103I ATGCAT 1 cut(s) 6
MroI TCCGGA 1 cut(s) 42
MspI CCGG 3 cut(s) 43, 493, 637
MspR9I CCNGG 5 cut(s) 209, 269, 494, 576, 638
MvaI CCWGG 3 cut(s) 209, 269, 576
NarI GGCGCC 1 cut(s) 478
NciI CCSGG 2 cut(s) 494, 638
NdeII GATC 4 cut(s) 130, 148, 177, 633
NlaIII CATG 3 cut(s) 8, 341, 485
NlaIV GGNNCC 4 cut(s) 273, 479, 491, 635
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 341
PaeR7I CTCGAG 1 cut(s) 662
PciI ACATGT 1 cut(s) 337
PfeI GAWTC 2 cut(s) 583, 592
PfoI TCCNGGA 1 cut(s) 492
PkrI GCNGC 2 cut(s) 622, 643
PleI GAGTC 1 cut(s) 382
PluTI GGCGCC 1 cut(s) 481
PpsI GAGTC 1 cut(s) 382
PscI ACATGT 1 cut(s) 337
Psp6I CCWGG 3 cut(s) 207, 267, 574
PspFI CCCAGC 1 cut(s) 542
PspGI CCWGG 3 cut(s) 207, 267, 574
PspN4I GGNNCC 4 cut(s) 273, 479, 491, 635
PspPI GGNCC 2 cut(s) 45, 490
PspXI VCTCGAGB 1 cut(s) 662
PsuI RGATCY 2 cut(s) 148, 633
RsaI GTAC 4 cut(s) 213, 281, 358, 451
RsaNI GTAC 4 cut(s) 212, 280, 357, 450
SatI GCNGC 2 cut(s) 621, 642
Sau3AI GATC 4 cut(s) 130, 148, 177, 633
Sau96I GGNCC 2 cut(s) 45, 490
ScaI AGTACT 1 cut(s) 358
SchI GAGTC 1 cut(s) 382
ScrFI CCNGG 5 cut(s) 209, 269, 494, 576, 638
SduI GDGCHC 2 cut(s) 195, 276
SfaNI GCATC 2 cut(s) 130, 632
SfcI CTRYAG 1 cut(s) 243
SfoI GGCGCC 1 cut(s) 479
Sfr274I CTCGAG 1 cut(s) 662
SinI GGWCC 2 cut(s) 45, 490
SlaI CTCGAG 1 cut(s) 662
SmlI CTYRAG 1 cut(s) 662
SmoI CTYRAG 1 cut(s) 662
Sse9I AATT 1 cut(s) 308
SspDI GGCGCC 1 cut(s) 477
SspI AATATT 1 cut(s) 413
SspMI CTAG 4 cut(s) 173, 423, 474, 570
StyD4I CCNGG 5 cut(s) 207, 267, 492, 574, 636
TaaI ACNGT 1 cut(s) 515
TaiI ACGT 1 cut(s) 207
TaqI TCGA 2 cut(s) 292, 663
TaqII GACCGA 1 cut(s) 329
TasI AATT 1 cut(s) 308
TatI WGTACW 2 cut(s) 279, 356
TfiI GAWTC 2 cut(s) 583, 592
TseI GCWGC 2 cut(s) 620, 641
TspDTI ATGAA 2 cut(s) 498, 668
VpaK11BI GGWCC 2 cut(s) 45, 490
XagI CCTNNNNNAGG 1 cut(s) 573
XceI RCATGY 1 cut(s) 341
XhoI CTCGAG 1 cut(s) 662
XmiI GTMKAC 2 cut(s) 258, 517
XspI CTAG 4 cut(s) 173, 423, 474, 570
ZrmI AGTACT 1 cut(s) 358
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.