Rw7G020820

Pre-mRNA-splicing factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0019038
Physical Location & Seq
Forward (+)
23878190 .. 23879018
829 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G020820.1

Sequence Viewer

Length: 729 bp
ATGCATGGAACAAAGCCAGAGAACCTGTTGCCAAATATCTTCCGGACCAAGATACAAGATATGAGATACTGGAAGGAGCATTGCTTCGGGTTGACGGCCGAAACCCTACTGGATAAAGCCATAGAACTGGATCGCATAGGTGGGACATTCGGAGGTAACCGAAAGCCCACACCCTTCTTGTGCCTGCCCTTCAAATACGTCCAGGTACTCGGAGCATTTTACTGGAGGCTCACGGCTACAGAGATTGATGTCTACCGATACCTGGAGCCCTTGTACAATGACTATCGAAAGCTGAGGAGGAAATTGGTTGTGGAGGAGCTTCTGACGAGTGAATACTGGTGTGACATTGTCTTGCCGAGGATTAAGAAGAGAGAGACTACGTGGTTGCTTGGTTTGTTGGAACCTAGAAAAAGTACTTTGGAGGACGAAGGCTTGGAGGAGGAGACTCAGGAGAGGGTGTTGAACGAATATTATCAAACTAGGAGGAGGAGGAGGAGGATGAGGGGTACGAGTAGGGAAAGAGATGAGGCTAGGCGCCATGAACGGGTCCGGGAAAGAGACAACTATCACCGTCTACTTCGTCAAAATAGAGACCTTCCCAGCTTTAGGAGGGGATGTCAACTTCCTAGTCCAGGTAGGAATCACGAGAATCATTGTGAGGATGGGATAGACATTGCTGCATCCAACAGGATCCGGGCAGCTCTTGGGATGAACCCCCTCGAGGTGTAG

Protein Analysis

242

Amino Acids

29.02

Weight (kDa)

9.39

Isoelectric Point (pI)

53.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PRP38 PF03371 1 - 65 3e-19 PRP38 family
PRP38 PF03371 64 - 126 4.2e-13 PRP38 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019038)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0209371 RchiOBHm_Chr7g0209411
rosa_multiflora Rmu_sc0035160.1_g000001 Rmu_sc0035161.1_g000001 Rmu_ssc0000038.1_g000014
rosa_samantha Rh7AG245900 Rh7AG246000 Rh7CG261500
rosa_wichuraiana Rw7G020820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 719
AccB1I GGYRCC 1 cut(s) 534
AccI GTMKAC 2 cut(s) 252, 574
AccIII TCCGGA 1 cut(s) 42
AclWI GGATC 3 cut(s) 138, 685, 698
AcoI YGGCCR 1 cut(s) 96
AcyI GRCGYC 1 cut(s) 535
AfaI GTAC 4 cut(s) 207, 275, 415, 508
AfiI CCNNNNNNNGG 5 cut(s) 262, 544, 606, 632, 721
AgsI TTSAA 2 cut(s) 193, 463
AjnI CCWGG 3 cut(s) 201, 261, 631
AluBI AGCT 4 cut(s) 292, 319, 603, 701
AluI AGCT 4 cut(s) 292, 319, 603, 701
Alw26I GTCTC 4 cut(s) 368, 437, 552, 585
AlwI GGATC 3 cut(s) 138, 685, 698
Ama87I CYCGRG 1 cut(s) 719
Aor13HI TCCGGA 1 cut(s) 42
AoxI GGCC 1 cut(s) 96
ApeKI GCWGC 2 cut(s) 677, 698
AspLEI GCGC 1 cut(s) 537
AspS9I GGNCC 2 cut(s) 45, 547
AsuC2I CCSGG 2 cut(s) 551, 695
AsuHPI GGTGA 1 cut(s) 560
AvaI CYCGRG 1 cut(s) 719
AvaII GGWCC 2 cut(s) 45, 547
BamHI GGATCC 1 cut(s) 690
BanI GGYRCC 1 cut(s) 534
BanII GRGCYC 1 cut(s) 270
BauI CACGAG 1 cut(s) 644
BbvCI CCTCAGC 1 cut(s) 293
BbvI GCAGC 2 cut(s) 664, 710
BccI CCATC 1 cut(s) 656
BceAI ACGGC 2 cut(s) 111, 249
BciT130I CCWGG 3 cut(s) 203, 263, 633
BcnI CCSGG 2 cut(s) 551, 695
BcoDI GTCTC 4 cut(s) 368, 437, 552, 585
BfaI CTAG 4 cut(s) 405, 480, 531, 627
BfmI CTRYAG 1 cut(s) 237
BfoI RGCGCY 1 cut(s) 538
BisI GCNGC 2 cut(s) 678, 699
BlsI GCNGC 2 cut(s) 679, 700
BmcAI AGTACT 1 cut(s) 415
Bme1390I CCNGG 5 cut(s) 203, 263, 551, 633, 695
Bme18I GGWCC 2 cut(s) 45, 547
BmeT110I CYCGRG 1 cut(s) 719
BmgT120I GGNCC 2 cut(s) 45, 547
BmiI GGNNCC 5 cut(s) 267, 402, 536, 548, 692
BmrFI CCNGG 5 cut(s) 203, 263, 551, 633, 695
BmsI GCATC 1 cut(s) 689
BpmI CTGGAG 2 cut(s) 244, 284
Bpu10I CCTNAGC 1 cut(s) 293
BpuMI CCSGG 2 cut(s) 551, 695
BsaAI YACGTR 1 cut(s) 381
BsaHI GRCGYC 1 cut(s) 535
BsaI GGTCTC 1 cut(s) 585
BsaJI CCNNGG 1 cut(s) 356
BsaWI WCCGGW 1 cut(s) 42
BsaXI ACNNNNNCTCC 6 cut(s) 257, 287, 443, 473, 601, 631
Bsc4I CCNNNNNNNGG 5 cut(s) 262, 544, 606, 632, 721
Bse1I ACTGG 5 cut(s) 74, 114, 132, 227, 341
Bse3DI GCAATG 2 cut(s) 79, 672
BseAI TCCGGA 1 cut(s) 42
BseBI CCWGG 3 cut(s) 203, 263, 633
BseDI CCNNGG 1 cut(s) 356
BseGI GGATG 5 cut(s) 504, 620, 667, 680, 714
BseLI CCNNNNNNNGG 5 cut(s) 262, 544, 606, 632, 721
BseMI GCAATG 2 cut(s) 79, 672
BseMII CTCAG 2 cut(s) 284, 461
BseNI ACTGG 5 cut(s) 74, 114, 132, 227, 341
BseRI GAGGAG 8 cut(s) 310, 329, 452, 455, 499, 502, 505, 508
BseX3I CGGCCG 1 cut(s) 96
BseXI GCAGC 2 cut(s) 664, 710
BseYI CCCAGC 1 cut(s) 599
Bsh1285I CGRYCG 1 cut(s) 99
BshFI GGCC 1 cut(s) 98
BshNI GGYRCC 1 cut(s) 534
BsiEI CGRYCG 1 cut(s) 99
BsiHKCI CYCGRG 1 cut(s) 719
BsiSI CCGG 3 cut(s) 43, 550, 694
BslFI GGGAC 1 cut(s) 157
BslI CCNNNNNNNGG 5 cut(s) 262, 544, 606, 632, 721
BsmAI GTCTC 4 cut(s) 368, 437, 552, 585
BsmFI GGGAC 1 cut(s) 157
BsnI GGCC 1 cut(s) 98
Bso31I GGTCTC 1 cut(s) 585
BsoBI CYCGRG 1 cut(s) 719
Bsp1286I GDGCHC 1 cut(s) 270
Bsp13I TCCGGA 1 cut(s) 42
Bsp1407I TGTACA 1 cut(s) 273
Bsp143I GATC 2 cut(s) 130, 690
BspANI GGCC 1 cut(s) 98
BspCNI CTCAG 2 cut(s) 285, 460
BspEI TCCGGA 1 cut(s) 42
BspLI GGNNCC 5 cut(s) 267, 402, 536, 548, 692
BspPI GGATC 3 cut(s) 138, 685, 698
BspT107I GGYRCC 1 cut(s) 534
BspTNI GGTCTC 1 cut(s) 585
BsrDI GCAATG 2 cut(s) 79, 672
BsrGI TGTACA 1 cut(s) 273
BsrI ACTGG 5 cut(s) 74, 114, 132, 227, 341
BssECI CCNNGG 1 cut(s) 356
BssMI GATC 2 cut(s) 130, 690
BssNI GRCGYC 1 cut(s) 535
BssSI CACGAG 1 cut(s) 644
Bst2BI CACGAG 1 cut(s) 644
Bst2UI CCWGG 3 cut(s) 203, 263, 633
Bst4CI ACNGT 1 cut(s) 572
Bst6I CTCTTC 1 cut(s) 362
BstACI GRCGYC 1 cut(s) 535
BstAUI TGTACA 1 cut(s) 273
BstBAI YACGTR 1 cut(s) 381
BstC8I GCNNGC 1 cut(s) 185
BstDEI CTNAG 2 cut(s) 293, 447
BstEII GGTNACC 1 cut(s) 155
BstENI CCTNNNNNAGG 1 cut(s) 630
BstF5I GGATG 5 cut(s) 504, 620, 667, 680, 714
BstH2I RGCGCY 1 cut(s) 538
BstHHI GCGC 1 cut(s) 537
BstKTI GATC 2 cut(s) 133, 693
BstMAI GTCTC 4 cut(s) 368, 437, 552, 585
BstMBI GATC 2 cut(s) 130, 690
BstMCI CGRYCG 1 cut(s) 99
BstNI CCWGG 3 cut(s) 203, 263, 633
BstPI GGTNACC 1 cut(s) 155
BstSCI CCNGG 5 cut(s) 201, 261, 549, 631, 693
BstSFI CTRYAG 1 cut(s) 237
BstV1I GCAGC 2 cut(s) 664, 710
BstX2I RGATCY 1 cut(s) 690
BstXI CCANNNNNNTGG 1 cut(s) 127
BstYI RGATCY 1 cut(s) 690
BstZI CGGCCG 1 cut(s) 96
BsuRI GGCC 1 cut(s) 98
BtsCI GGATG 5 cut(s) 504, 620, 667, 680, 714
Cac8I GCNNGC 1 cut(s) 185
CfoI GCGC 1 cut(s) 537
Cfr13I GGNCC 2 cut(s) 45, 547
Csp6I GTAC 4 cut(s) 206, 274, 414, 507
CviAII CATG 2 cut(s) 5, 539
CviQI GTAC 4 cut(s) 206, 274, 414, 507
DdeI CTNAG 2 cut(s) 293, 447
DinI GGCGCC 1 cut(s) 536
DpnI GATC 2 cut(s) 132, 692
DpnII GATC 2 cut(s) 130, 690
EaeI YGGCCR 1 cut(s) 96
EagI CGGCCG 1 cut(s) 96
Eam1104I CTCTTC 1 cut(s) 362
EarI CTCTTC 1 cut(s) 362
EclXI CGGCCG 1 cut(s) 96
Eco24I GRGCYC 1 cut(s) 270
Eco31I GGTCTC 1 cut(s) 585
Eco47I GGWCC 2 cut(s) 45, 547
Eco52I CGGCCG 1 cut(s) 96
Eco88I CYCGRG 1 cut(s) 719
Eco91I GGTNACC 1 cut(s) 155
EcoNI CCTNNNNNAGG 1 cut(s) 630
EcoO65I GGTNACC 1 cut(s) 155
EcoRII CCWGG 3 cut(s) 201, 261, 631
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 270
EgeI GGCGCC 1 cut(s) 536
EheI GGCGCC 1 cut(s) 536
FaeI CATG 2 cut(s) 8, 542
FaiI YATR 5 cut(s) 6, 62, 122, 137, 540
FaqI GGGAC 1 cut(s) 157
FatI CATG 2 cut(s) 4, 538
FblI GTMKAC 2 cut(s) 252, 574
Fnu4HI GCNGC 2 cut(s) 678, 699
FokI GGATG 5 cut(s) 511, 627, 667, 674, 721
FriOI GRGCYC 1 cut(s) 270
Fsp4HI GCNGC 2 cut(s) 678, 699
FspBI CTAG 4 cut(s) 405, 480, 531, 627
GlaI GCGC 1 cut(s) 536
GluI GCNGC 2 cut(s) 678, 699
GsaI CCCAGC 1 cut(s) 603
GsuI CTGGAG 2 cut(s) 244, 284
HaeII RGCGCY 1 cut(s) 538
HaeIII GGCC 1 cut(s) 98
HapII CCGG 3 cut(s) 43, 550, 694
HhaI GCGC 1 cut(s) 537
Hin1I GRCGYC 1 cut(s) 535
Hin1II CATG 2 cut(s) 8, 542
Hin6I GCGC 1 cut(s) 535
HinP1I GCGC 1 cut(s) 535
HincII GTYRAC 2 cut(s) 93, 620
HindII GTYRAC 2 cut(s) 93, 620
HinfI GANTC 3 cut(s) 445, 640, 649
HpaII CCGG 3 cut(s) 43, 550, 694
HphI GGTGA 1 cut(s) 560
Hpy166II GTNNAC 4 cut(s) 93, 253, 575, 620
Hpy188I TCNGA 3 cut(s) 152, 212, 324
Hpy188III TCNNGA 3 cut(s) 43, 449, 644
Hpy8I GTNNAC 4 cut(s) 93, 253, 575, 620
HpyAV CCTTC 5 cut(s) 67, 184, 199, 422, 605
HpyCH4III ACNGT 1 cut(s) 572
HpyCH4IV ACGT 2 cut(s) 198, 380
HpyCH4V TGCA 2 cut(s) 4, 680
HpyF3I CTNAG 2 cut(s) 293, 447
HpySE526I ACGT 2 cut(s) 198, 380
Hsp92I GRCGYC 1 cut(s) 535
Hsp92II CATG 2 cut(s) 8, 542
HspAI GCGC 1 cut(s) 535
KasI GGCGCC 1 cut(s) 534
Kpn2I TCCGGA 1 cut(s) 42
Kzo9I GATC 2 cut(s) 130, 690
LmnI GCTCC 4 cut(s) 76, 212, 265, 316
Lsp1109I GCAGC 2 cut(s) 664, 710
LweI GCATC 1 cut(s) 689
MaeI CTAG 4 cut(s) 405, 480, 531, 627
MaeII ACGT 2 cut(s) 198, 380
MaeIII GTNAC 2 cut(s) 155, 341
MalI GATC 2 cut(s) 132, 692
MboI GATC 2 cut(s) 130, 690
MboII GAAGA 2 cut(s) 31, 379
MflI RGATCY 1 cut(s) 690
MhlI GDGCHC 1 cut(s) 270
MluCI AATT 1 cut(s) 302
Mly113I GGCGCC 1 cut(s) 535
MlyI GAGTC 1 cut(s) 439
MmeI TCCRAC 2 cut(s) 378, 708
Mph1103I ATGCAT 1 cut(s) 6
MroI TCCGGA 1 cut(s) 42
MseI TTAA 1 cut(s) 363
MspI CCGG 3 cut(s) 43, 550, 694
MspR9I CCNGG 5 cut(s) 203, 263, 551, 633, 695
MvaI CCWGG 3 cut(s) 203, 263, 633
NarI GGCGCC 1 cut(s) 535
NciI CCSGG 2 cut(s) 551, 695
NdeII GATC 2 cut(s) 130, 690
NlaIII CATG 2 cut(s) 8, 542
NlaIV GGNNCC 5 cut(s) 267, 402, 536, 548, 692
NmeAIII GCCGAG 1 cut(s) 381
NmuCI GTSAC 1 cut(s) 341
NsiI ATGCAT 1 cut(s) 6
PaeR7I CTCGAG 1 cut(s) 719
PfeI GAWTC 2 cut(s) 640, 649
PflFI GACNNNGTC 1 cut(s) 347
PfoI TCCNGGA 1 cut(s) 549
PkrI GCNGC 2 cut(s) 679, 700
PleI GAGTC 1 cut(s) 439
PluTI GGCGCC 1 cut(s) 538
PpsI GAGTC 1 cut(s) 439
Ppu21I YACGTR 1 cut(s) 381
Psp6I CCWGG 3 cut(s) 201, 261, 631
PspEI GGTNACC 1 cut(s) 155
PspFI CCCAGC 1 cut(s) 599
PspGI CCWGG 3 cut(s) 201, 261, 631
PspN4I GGNNCC 5 cut(s) 267, 402, 536, 548, 692
PspPI GGNCC 2 cut(s) 45, 547
PspXI VCTCGAGB 1 cut(s) 719
PsuI RGATCY 1 cut(s) 690
PsyI GACNNNGTC 1 cut(s) 347
RsaI GTAC 4 cut(s) 207, 275, 415, 508
RsaNI GTAC 4 cut(s) 206, 274, 414, 507
SaqAI TTAA 1 cut(s) 363
SatI GCNGC 2 cut(s) 678, 699
Sau3AI GATC 2 cut(s) 130, 690
Sau96I GGNCC 2 cut(s) 45, 547
ScaI AGTACT 1 cut(s) 415
SchI GAGTC 1 cut(s) 439
ScrFI CCNGG 5 cut(s) 203, 263, 551, 633, 695
SduI GDGCHC 1 cut(s) 270
SfaNI GCATC 1 cut(s) 689
SfcI CTRYAG 1 cut(s) 237
SfoI GGCGCC 1 cut(s) 536
Sfr274I CTCGAG 1 cut(s) 719
SinI GGWCC 2 cut(s) 45, 547
SlaI CTCGAG 1 cut(s) 719
SmlI CTYRAG 1 cut(s) 719
SmoI CTYRAG 1 cut(s) 719
Sse9I AATT 1 cut(s) 302
SspDI GGCGCC 1 cut(s) 534
SspI AATATT 1 cut(s) 470
SspMI CTAG 4 cut(s) 405, 480, 531, 627
StyD4I CCNGG 5 cut(s) 201, 261, 549, 631, 693
TaaI ACNGT 1 cut(s) 572
TaiI ACGT 2 cut(s) 201, 383
TaqI TCGA 2 cut(s) 286, 720
TasI AATT 1 cut(s) 302
TatI WGTACW 2 cut(s) 273, 413
TfiI GAWTC 2 cut(s) 640, 649
Tru1I TTAA 1 cut(s) 363
Tru9I TTAA 1 cut(s) 363
TseFI GTSAC 1 cut(s) 341
TseI GCWGC 2 cut(s) 677, 698
Tsp45I GTSAC 1 cut(s) 341
TspDTI ATGAA 2 cut(s) 555, 725
Tth111I GACNNNGTC 1 cut(s) 347
VpaK11BI GGWCC 2 cut(s) 45, 547
XagI CCTNNNNNAGG 1 cut(s) 630
XhoI CTCGAG 1 cut(s) 719
XmiI GTMKAC 2 cut(s) 252, 574
XspI CTAG 4 cut(s) 405, 480, 531, 627
ZrmI AGTACT 1 cut(s) 415
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.