RchiOBHm_Chr7g0209371

PRP38 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0019038
Physical Location & Seq
Forward (+)
26779076 .. 26779237
162 bp
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UTR
Exon/CDS
Intron
PRQ18739

Sequence Viewer

Length: 162 bp
ATGAATGGAACAAAGCCAGAGAACCTGTTGCCAAATATCGTCCGGACCAAGATACAAGATATGAGATACTGGAAGGAGCATTGCTTCGGGTTGACGGCCGAATCCCTACTGGAAAAAGCCATAGAACTGGATCGCATAGGTGGGACATTCGGAGGTAACTGA

Protein Analysis

53

Amino Acids

6.01

Weight (kDa)

6.54

Isoelectric Point (pI)

27.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PRP38 PF03371 1 - 53 1e-13 PRP38 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019038)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0209371 RchiOBHm_Chr7g0209411
rosa_multiflora Rmu_sc0035160.1_g000001 Rmu_sc0035161.1_g000001 Rmu_ssc0000038.1_g000014
rosa_samantha Rh7AG245900 Rh7AG246000 Rh7CG261500
rosa_wichuraiana Rw7G020820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 42
AclWI GGATC 1 cut(s) 138
AcoI YGGCCR 1 cut(s) 96
AlwI GGATC 1 cut(s) 138
Aor13HI TCCGGA 1 cut(s) 42
AoxI GGCC 1 cut(s) 96
AspS9I GGNCC 1 cut(s) 45
AvaII GGWCC 1 cut(s) 45
BceAI ACGGC 1 cut(s) 111
Bme18I GGWCC 1 cut(s) 45
BmgT120I GGNCC 1 cut(s) 45
BsaWI WCCGGW 1 cut(s) 42
Bse1I ACTGG 3 cut(s) 74, 114, 132
Bse3DI GCAATG 1 cut(s) 79
BseAI TCCGGA 1 cut(s) 42
BseMI GCAATG 1 cut(s) 79
BseNI ACTGG 3 cut(s) 74, 114, 132
BseX3I CGGCCG 1 cut(s) 96
Bsh1285I CGRYCG 1 cut(s) 99
BshFI GGCC 1 cut(s) 98
BsiEI CGRYCG 1 cut(s) 99
BsiSI CCGG 1 cut(s) 43
BslFI GGGAC 1 cut(s) 157
BsmFI GGGAC 1 cut(s) 157
BsnI GGCC 1 cut(s) 98
Bsp13I TCCGGA 1 cut(s) 42
Bsp143I GATC 1 cut(s) 130
BspANI GGCC 1 cut(s) 98
BspEI TCCGGA 1 cut(s) 42
BspPI GGATC 1 cut(s) 138
BsrDI GCAATG 1 cut(s) 79
BsrI ACTGG 3 cut(s) 74, 114, 132
BssMI GATC 1 cut(s) 130
BstKTI GATC 1 cut(s) 133
BstMBI GATC 1 cut(s) 130
BstMCI CGRYCG 1 cut(s) 99
BstXI CCANNNNNNTGG 1 cut(s) 127
BstZI CGGCCG 1 cut(s) 96
BsuRI GGCC 1 cut(s) 98
Cfr13I GGNCC 1 cut(s) 45
CviJI RGCY 3 cut(s) 16, 98, 119
CviKI_1 RGCY 3 cut(s) 16, 98, 119
DpnI GATC 1 cut(s) 132
DpnII GATC 1 cut(s) 130
EaeI YGGCCR 1 cut(s) 96
EagI CGGCCG 1 cut(s) 96
EclXI CGGCCG 1 cut(s) 96
Eco47I GGWCC 1 cut(s) 45
Eco52I CGGCCG 1 cut(s) 96
FaiI YATR 3 cut(s) 62, 122, 137
FaqI GGGAC 1 cut(s) 157
HaeIII GGCC 1 cut(s) 98
HapII CCGG 1 cut(s) 43
HincII GTYRAC 1 cut(s) 93
HindII GTYRAC 1 cut(s) 93
HinfI GANTC 1 cut(s) 101
HpaII CCGG 1 cut(s) 43
Hpy166II GTNNAC 1 cut(s) 93
Hpy188I TCNGA 1 cut(s) 152
Hpy188III TCNNGA 1 cut(s) 43
Hpy8I GTNNAC 1 cut(s) 93
HpyAV CCTTC 1 cut(s) 67
Kpn2I TCCGGA 1 cut(s) 42
Kzo9I GATC 1 cut(s) 130
LmnI GCTCC 1 cut(s) 76
LpnPI CCDG 6 cut(s) 30, 38, 55, 56, 95, 113
MaeIII GTNAC 1 cut(s) 155
MalI GATC 1 cut(s) 132
MboI GATC 1 cut(s) 130
MnlI CCTC 1 cut(s) 146
MroI TCCGGA 1 cut(s) 42
MspI CCGG 1 cut(s) 43
NdeII GATC 1 cut(s) 130
PfeI GAWTC 1 cut(s) 101
PspPI GGNCC 1 cut(s) 45
Sau3AI GATC 1 cut(s) 130
Sau96I GGNCC 1 cut(s) 45
SetI ASST 3 cut(s) 27, 142, 157
SgeI CNNG 9 cut(s) 29, 37, 55, 61, 68, 82, 100, 122, 140
SinI GGWCC 1 cut(s) 45
TfiI GAWTC 1 cut(s) 101
TspDTI ATGAA 1 cut(s) 17
VpaK11BI GGWCC 1 cut(s) 45
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.