Rh7AG245900

Pre-mRNA-splicing factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0019038
Physical Location & Seq
Forward (+)
24280450 .. 24281018
569 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG245900.1

Sequence Viewer

Length: 489 bp
ATGCATGGAACAAAGTCAACAAACCCAGAGAACCTGTTGCCAAAAATCGTCCGGACCAAGATACAAGATATGAGATACTGGAAGGAGCATTGCTTCGGGTTGACGGCCGAAACCCTACTGGATAAAACCATAGAACTGGATCGCATAGGTGGGACATTCGGAGGTAGCCGAAAGCCCACACCCTTCTTGTGCCTGGTACTCGGAGCATTTTACTGGCGGCTCACGGCTACAGAGATTGATGTCTACCGATACCAGGAGCCCTTGTACAATGACTATCGAAAGCTGAGGAGGAAATTGGCCGATGGAGGCTTTGCTTTGACACATGTGGATGAGGTTGTGGAGGAGCTTCTGACGAGTGAATACTGGTGTGACATTGTCTTGCCGAGGATTAAGAAGAGAGAGACTATGTGGTTGATTGGTTTGTTGGAACCTAGAAAAAGTACTTTGGAGGACAAAGGCTTGGAGGAGGAGACCAGGAGAGGGTGTTGA

Protein Analysis

162

Amino Acids

18.96

Weight (kDa)

7.65

Isoelectric Point (pI)

37.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PRP38 PF03371 5 - 67 2.6e-19 PRP38 family
PRP38 PF03371 66 - 135 7.8e-21 PRP38 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019038)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0209371 RchiOBHm_Chr7g0209411
rosa_multiflora Rmu_sc0035160.1_g000001 Rmu_sc0035161.1_g000001 Rmu_ssc0000038.1_g000014
rosa_samantha Rh7AG245900 Rh7AG246000 Rh7CG261500
rosa_wichuraiana Rw7G020820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 243
AccIII TCCGGA 1 cut(s) 51
AciI CCGC 1 cut(s) 217
AclWI GGATC 1 cut(s) 147
AcoI YGGCCR 2 cut(s) 105, 297
AfaI GTAC 3 cut(s) 198, 266, 442
AfiI CCNNNNNNNGG 2 cut(s) 253, 480
AflIII ACRYGT 1 cut(s) 322
AjnI CCWGG 3 cut(s) 192, 252, 473
AluBI AGCT 2 cut(s) 283, 346
AluI AGCT 2 cut(s) 283, 346
Alw26I GTCTC 2 cut(s) 395, 464
AlwI GGATC 1 cut(s) 147
Aor13HI TCCGGA 1 cut(s) 51
AoxI GGCC 2 cut(s) 105, 297
AspS9I GGNCC 1 cut(s) 54
AvaII GGWCC 1 cut(s) 54
BanII GRGCYC 1 cut(s) 261
BbvCI CCTCAGC 1 cut(s) 284
BccI CCATC 1 cut(s) 296
BceAI ACGGC 2 cut(s) 120, 240
BciT130I CCWGG 3 cut(s) 194, 254, 475
BcoDI GTCTC 2 cut(s) 395, 464
BfaI CTAG 1 cut(s) 432
BfmI CTRYAG 1 cut(s) 228
BisI GCNGC 1 cut(s) 218
BlsI GCNGC 1 cut(s) 219
BmcAI AGTACT 1 cut(s) 442
Bme1390I CCNGG 3 cut(s) 194, 254, 475
Bme18I GGWCC 1 cut(s) 54
BmgT120I GGNCC 1 cut(s) 54
BmiI GGNNCC 2 cut(s) 258, 429
BmrFI CCNGG 3 cut(s) 194, 254, 475
Bpu10I CCTNAGC 1 cut(s) 284
BsaI GGTCTC 1 cut(s) 464
BsaJI CCNNGG 1 cut(s) 383
BsaWI WCCGGW 1 cut(s) 51
BsaXI ACNNNNNCTCC 3 cut(s) 248, 278, 469
Bsc4I CCNNNNNNNGG 2 cut(s) 253, 480
Bse1I ACTGG 5 cut(s) 83, 123, 141, 218, 368
Bse3DI GCAATG 1 cut(s) 88
BseAI TCCGGA 1 cut(s) 51
BseBI CCWGG 3 cut(s) 194, 254, 475
BseDI CCNNGG 1 cut(s) 383
BseGI GGATG 1 cut(s) 334
BseLI CCNNNNNNNGG 2 cut(s) 253, 480
BseMI GCAATG 1 cut(s) 88
BseMII CTCAG 1 cut(s) 275
BseNI ACTGG 5 cut(s) 83, 123, 141, 218, 368
BseRI GAGGAG 4 cut(s) 301, 356, 479, 482
BseX3I CGGCCG 1 cut(s) 105
Bsh1285I CGRYCG 1 cut(s) 108
BshFI GGCC 2 cut(s) 107, 299
BsiEI CGRYCG 1 cut(s) 108
BsiSI CCGG 1 cut(s) 52
BslFI GGGAC 1 cut(s) 166
BslI CCNNNNNNNGG 2 cut(s) 253, 480
BsmAI GTCTC 2 cut(s) 395, 464
BsmFI GGGAC 1 cut(s) 166
BsnI GGCC 2 cut(s) 107, 299
Bso31I GGTCTC 1 cut(s) 464
Bsp1286I GDGCHC 1 cut(s) 261
Bsp13I TCCGGA 1 cut(s) 51
Bsp1407I TGTACA 1 cut(s) 264
Bsp143I GATC 1 cut(s) 139
BspACI CCGC 1 cut(s) 217
BspANI GGCC 2 cut(s) 107, 299
BspCNI CTCAG 1 cut(s) 276
BspEI TCCGGA 1 cut(s) 51
BspLI GGNNCC 2 cut(s) 258, 429
BspPI GGATC 1 cut(s) 147
BspTNI GGTCTC 1 cut(s) 464
BsrDI GCAATG 1 cut(s) 88
BsrGI TGTACA 1 cut(s) 264
BsrI ACTGG 5 cut(s) 83, 123, 141, 218, 368
BssECI CCNNGG 1 cut(s) 383
BssMI GATC 1 cut(s) 139
Bst2UI CCWGG 3 cut(s) 194, 254, 475
Bst6I CTCTTC 1 cut(s) 389
BstAUI TGTACA 1 cut(s) 264
BstDEI CTNAG 1 cut(s) 284
BstF5I GGATG 1 cut(s) 334
BstKTI GATC 1 cut(s) 142
BstMAI GTCTC 2 cut(s) 395, 464
BstMBI GATC 1 cut(s) 139
BstMCI CGRYCG 1 cut(s) 108
BstNI CCWGG 3 cut(s) 194, 254, 475
BstNSI RCATGY 1 cut(s) 326
BstSCI CCNGG 3 cut(s) 192, 252, 473
BstSFI CTRYAG 1 cut(s) 228
BstXI CCANNNNNNTGG 1 cut(s) 136
BstZI CGGCCG 1 cut(s) 105
BsuRI GGCC 2 cut(s) 107, 299
BtsCI GGATG 1 cut(s) 334
Cfr13I GGNCC 1 cut(s) 54
Csp6I GTAC 3 cut(s) 197, 265, 441
CviAII CATG 2 cut(s) 5, 323
CviQI GTAC 3 cut(s) 197, 265, 441
DdeI CTNAG 1 cut(s) 284
DpnI GATC 1 cut(s) 141
DpnII GATC 1 cut(s) 139
EaeI YGGCCR 2 cut(s) 105, 297
EagI CGGCCG 1 cut(s) 105
Eam1104I CTCTTC 1 cut(s) 389
EarI CTCTTC 1 cut(s) 389
EclXI CGGCCG 1 cut(s) 105
Eco24I GRGCYC 1 cut(s) 261
Eco31I GGTCTC 1 cut(s) 464
Eco47I GGWCC 1 cut(s) 54
Eco52I CGGCCG 1 cut(s) 105
EcoRII CCWGG 3 cut(s) 192, 252, 473
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 261
FaeI CATG 2 cut(s) 8, 326
FaiI YATR 6 cut(s) 6, 71, 131, 146, 324, 407
FaqI GGGAC 1 cut(s) 166
FatI CATG 2 cut(s) 4, 322
FblI GTMKAC 1 cut(s) 243
Fnu4HI GCNGC 1 cut(s) 218
FokI GGATG 1 cut(s) 341
FriOI GRGCYC 1 cut(s) 261
Fsp4HI GCNGC 1 cut(s) 218
FspBI CTAG 1 cut(s) 432
GluI GCNGC 1 cut(s) 218
HaeIII GGCC 2 cut(s) 107, 299
HapII CCGG 1 cut(s) 52
Hin1II CATG 2 cut(s) 8, 326
HincII GTYRAC 2 cut(s) 18, 102
HindII GTYRAC 2 cut(s) 18, 102
HpaII CCGG 1 cut(s) 52
Hpy166II GTNNAC 3 cut(s) 18, 102, 244
Hpy188I TCNGA 3 cut(s) 161, 203, 351
Hpy188III TCNNGA 1 cut(s) 52
Hpy8I GTNNAC 3 cut(s) 18, 102, 244
HpyAV CCTTC 2 cut(s) 76, 193
HpyCH4V TGCA 1 cut(s) 4
HpyF3I CTNAG 1 cut(s) 284
Hsp92II CATG 2 cut(s) 8, 326
Kpn2I TCCGGA 1 cut(s) 51
Kzo9I GATC 1 cut(s) 139
LmnI GCTCC 4 cut(s) 85, 203, 256, 343
MaeI CTAG 1 cut(s) 432
MaeIII GTNAC 1 cut(s) 368
MalI GATC 1 cut(s) 141
MboI GATC 1 cut(s) 139
MboII GAAGA 1 cut(s) 406
MhlI GDGCHC 1 cut(s) 261
MluCI AATT 1 cut(s) 293
MmeI TCCRAC 1 cut(s) 405
Mph1103I ATGCAT 1 cut(s) 6
MroI TCCGGA 1 cut(s) 51
MseI TTAA 1 cut(s) 390
MslI CAYNNNNRTG 1 cut(s) 327
MspI CCGG 1 cut(s) 52
MspR9I CCNGG 3 cut(s) 194, 254, 475
MvaI CCWGG 3 cut(s) 194, 254, 475
NdeII GATC 1 cut(s) 139
NlaIII CATG 2 cut(s) 8, 326
NlaIV GGNNCC 2 cut(s) 258, 429
NmeAIII GCCGAG 1 cut(s) 408
NmuCI GTSAC 1 cut(s) 368
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 326
PciI ACATGT 1 cut(s) 322
PflFI GACNNNGTC 1 cut(s) 374
PkrI GCNGC 1 cut(s) 219
PscI ACATGT 1 cut(s) 322
Psp6I CCWGG 3 cut(s) 192, 252, 473
PspGI CCWGG 3 cut(s) 192, 252, 473
PspN4I GGNNCC 2 cut(s) 258, 429
PspPI GGNCC 1 cut(s) 54
PsyI GACNNNGTC 1 cut(s) 374
RsaI GTAC 3 cut(s) 198, 266, 442
RsaNI GTAC 3 cut(s) 197, 265, 441
RseI CAYNNNNRTG 1 cut(s) 327
SaqAI TTAA 1 cut(s) 390
SatI GCNGC 1 cut(s) 218
Sau3AI GATC 1 cut(s) 139
Sau96I GGNCC 1 cut(s) 54
ScaI AGTACT 1 cut(s) 442
ScrFI CCNGG 3 cut(s) 194, 254, 475
SduI GDGCHC 1 cut(s) 261
SetI ASST 7 cut(s) 36, 151, 166, 285, 336, 348, 433
SfcI CTRYAG 1 cut(s) 228
SinI GGWCC 1 cut(s) 54
SmiMI CAYNNNNRTG 1 cut(s) 327
Sse9I AATT 1 cut(s) 293
SsiI CCGC 1 cut(s) 217
SspMI CTAG 1 cut(s) 432
StyD4I CCNGG 3 cut(s) 192, 252, 473
TaqI TCGA 1 cut(s) 277
TasI AATT 1 cut(s) 293
TatI WGTACW 2 cut(s) 264, 440
TauI GCSGC 1 cut(s) 220
Tru1I TTAA 1 cut(s) 390
Tru9I TTAA 1 cut(s) 390
TseFI GTSAC 1 cut(s) 368
Tsp45I GTSAC 1 cut(s) 368
Tth111I GACNNNGTC 1 cut(s) 374
VpaK11BI GGWCC 1 cut(s) 54
XceI RCATGY 1 cut(s) 326
XmiI GTMKAC 1 cut(s) 243
XspI CTAG 1 cut(s) 432
ZrmI AGTACT 1 cut(s) 442
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.