Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs)
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G05370 AT2G05370 |
| malus_domestica | MD09G1153900.v1.1 |
| rosa_chinensis | RchiOBHm_Chr7g0220451 |
| rosa_multiflora | Rmu_sc0008004.1_g000005 Rmu_sc0008004.1_g000006 |
| rosa_samantha | Rh7AG333200 Rh7CG350700 |
| rosa_wichuraiana | Rw6G014790 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 386 |
| AcsI | RAATTY | 3 cut(s) | 91, 319, 410 |
| AfaI | GTAC | 1 cut(s) | 403 |
| AgsI | TTSAA | 3 cut(s) | 58, 122, 232 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 15, 47, 239, 271 |
| AluBI | AGCT | 3 cut(s) | 26, 100, 296 |
| AluI | AGCT | 3 cut(s) | 26, 100, 296 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 191 |
| ApeKI | GCWGC | 1 cut(s) | 206 |
| ApoI | RAATTY | 3 cut(s) | 91, 319, 410 |
| AspLEI | GCGC | 1 cut(s) | 216 |
| AspS9I | GGNCC | 1 cut(s) | 359 |
| AsuII | TTCGAA | 1 cut(s) | 421 |
| AvaII | GGWCC | 1 cut(s) | 359 |
| BanII | GRGCYC | 1 cut(s) | 263 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 415, 447 |
| BbvI | GCAGC | 1 cut(s) | 193 |
| BccI | CCATC | 1 cut(s) | 392 |
| BceAI | ACGGC | 1 cut(s) | 449 |
| BfaI | CTAG | 3 cut(s) | 38, 77, 332 |
| BfoI | RGCGCY | 1 cut(s) | 217 |
| BglII | AGATCT | 1 cut(s) | 15 |
| BisI | GCNGC | 1 cut(s) | 207 |
| BlsI | GCNGC | 1 cut(s) | 208 |
| Bme18I | GGWCC | 1 cut(s) | 359 |
| BmgT120I | GGNCC | 1 cut(s) | 359 |
| BmiI | GGNNCC | 1 cut(s) | 360 |
| BmsI | GCATC | 3 cut(s) | 184, 193, 418 |
| Bpu14I | TTCGAA | 1 cut(s) | 421 |
| BseGI | GGATG | 1 cut(s) | 208 |
| BseMII | CTCAG | 1 cut(s) | 255 |
| BseRI | GAGGAG | 1 cut(s) | 283 |
| BseXI | GCAGC | 1 cut(s) | 193 |
| BseYI | CCCAGC | 1 cut(s) | 209 |
| BslFI | GGGAC | 1 cut(s) | 372 |
| BsmFI | GGGAC | 1 cut(s) | 372 |
| Bsp119I | TTCGAA | 1 cut(s) | 421 |
| Bsp1286I | GDGCHC | 1 cut(s) | 263 |
| Bsp143I | GATC | 2 cut(s) | 15, 472 |
| BspACI | CCGC | 1 cut(s) | 386 |
| BspCNI | CTCAG | 1 cut(s) | 256 |
| BspLI | GGNNCC | 1 cut(s) | 360 |
| BspT104I | TTCGAA | 1 cut(s) | 421 |
| BssMI | GATC | 2 cut(s) | 15, 472 |
| Bst4CI | ACNGT | 1 cut(s) | 392 |
| Bst6I | CTCTTC | 1 cut(s) | 418 |
| BstBI | TTCGAA | 1 cut(s) | 421 |
| BstC8I | GCNNGC | 1 cut(s) | 462 |
| BstDEI | CTNAG | 1 cut(s) | 264 |
| BstF5I | GGATG | 1 cut(s) | 208 |
| BstH2I | RGCGCY | 1 cut(s) | 217 |
| BstHHI | GCGC | 1 cut(s) | 216 |
| BstKTI | GATC | 2 cut(s) | 18, 475 |
| BstMBI | GATC | 2 cut(s) | 15, 472 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 203, 248, 457 |
| BstNSI | RCATGY | 2 cut(s) | 158, 464 |
| BstV1I | GCAGC | 1 cut(s) | 193 |
| BstX2I | RGATCY | 1 cut(s) | 15 |
| BstYI | RGATCY | 1 cut(s) | 15 |
| BtsCI | GGATG | 1 cut(s) | 208 |
| BtsIMutI | CAGTG | 2 cut(s) | 192, 242 |
| Cac8I | GCNNGC | 1 cut(s) | 462 |
| CaiI | CAGNNNCTG | 1 cut(s) | 191 |
| CfoI | GCGC | 1 cut(s) | 216 |
| Cfr13I | GGNCC | 1 cut(s) | 359 |
| Csp6I | GTAC | 1 cut(s) | 402 |
| CviAII | CATG | 2 cut(s) | 155, 461 |
| CviJI | RGCY | 6 cut(s) | 26, 37, 82, 100, 261, 296 |
| CviKI_1 | RGCY | 6 cut(s) | 26, 37, 82, 100, 261, 296 |
| CviQI | GTAC | 1 cut(s) | 402 |
| DdeI | CTNAG | 1 cut(s) | 264 |
| DpnI | GATC | 2 cut(s) | 17, 474 |
| DpnII | GATC | 2 cut(s) | 15, 472 |
| DraI | TTTAAA | 1 cut(s) | 445 |
| Eam1104I | CTCTTC | 1 cut(s) | 418 |
| EarI | CTCTTC | 1 cut(s) | 418 |
| Eco24I | GRGCYC | 1 cut(s) | 263 |
| Eco47I | GGWCC | 1 cut(s) | 359 |
| EcoT22I | ATGCAT | 1 cut(s) | 160 |
| EcoT38I | GRGCYC | 1 cut(s) | 263 |
| FaeI | CATG | 2 cut(s) | 158, 464 |
| FaiI | YATR | 6 cut(s) | 138, 156, 200, 369, 462, 478 |
| FaqI | GGGAC | 1 cut(s) | 372 |
| FatI | CATG | 2 cut(s) | 154, 460 |
| Fnu4HI | GCNGC | 1 cut(s) | 207 |
| FokI | GGATG | 1 cut(s) | 215 |
| FriOI | GRGCYC | 1 cut(s) | 263 |
| Fsp4HI | GCNGC | 1 cut(s) | 207 |
| FspBI | CTAG | 3 cut(s) | 38, 77, 332 |
| GlaI | GCGC | 1 cut(s) | 215 |
| GluI | GCNGC | 1 cut(s) | 207 |
| GsaI | CCCAGC | 1 cut(s) | 213 |
| HaeII | RGCGCY | 1 cut(s) | 217 |
| HhaI | GCGC | 1 cut(s) | 216 |
| Hin1II | CATG | 2 cut(s) | 158, 464 |
| Hin6I | GCGC | 1 cut(s) | 214 |
| HinP1I | GCGC | 1 cut(s) | 214 |
| HincII | GTYRAC | 1 cut(s) | 221 |
| HindII | GTYRAC | 1 cut(s) | 221 |
| Hpy166II | GTNNAC | 1 cut(s) | 221 |
| Hpy188I | TCNGA | 2 cut(s) | 90, 265 |
| Hpy188III | TCNNGA | 2 cut(s) | 77, 289 |
| Hpy8I | GTNNAC | 1 cut(s) | 221 |
| HpyCH4III | ACNGT | 1 cut(s) | 392 |
| HpyCH4V | TGCA | 3 cut(s) | 113, 158, 371 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 203, 248, 457 |
| HpyF3I | CTNAG | 1 cut(s) | 264 |
| Hsp92II | CATG | 2 cut(s) | 158, 464 |
| HspAI | GCGC | 1 cut(s) | 214 |
| Kzo9I | GATC | 2 cut(s) | 15, 472 |
| LpnPI | CCDG | 3 cut(s) | 96, 192, 195 |
| Lsp1109I | GCAGC | 1 cut(s) | 193 |
| LweI | GCATC | 3 cut(s) | 184, 193, 418 |
| MaeI | CTAG | 3 cut(s) | 38, 77, 332 |
| MaeIII | GTNAC | 1 cut(s) | 187 |
| MalI | GATC | 2 cut(s) | 17, 474 |
| MboI | GATC | 2 cut(s) | 15, 472 |
| MboII | GAAGA | 3 cut(s) | 25, 286, 435 |
| MflI | RGATCY | 1 cut(s) | 15 |
| MhlI | GDGCHC | 1 cut(s) | 263 |
| MluCI | AATT | 4 cut(s) | 30, 91, 319, 410 |
| MnlI | CCTC | 5 cut(s) | 84, 142, 261, 264, 348 |
| Mph1103I | ATGCAT | 1 cut(s) | 160 |
| MseI | TTAA | 4 cut(s) | 5, 68, 96, 444 |
| MslI | CAYNNNNRTG | 1 cut(s) | 445 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 203, 248, 457 |
| NdeII | GATC | 2 cut(s) | 15, 472 |
| NlaIII | CATG | 2 cut(s) | 158, 464 |
| NlaIV | GGNNCC | 1 cut(s) | 360 |
| NmuCI | GTSAC | 1 cut(s) | 187 |
| NsiI | ATGCAT | 1 cut(s) | 160 |
| NspI | RCATGY | 2 cut(s) | 158, 464 |
| NspV | TTCGAA | 1 cut(s) | 421 |
| PaeI | GCATGC | 1 cut(s) | 464 |
| PkrI | GCNGC | 1 cut(s) | 208 |
| PspFI | CCCAGC | 1 cut(s) | 209 |
| PspN4I | GGNNCC | 1 cut(s) | 360 |
| PspPI | GGNCC | 1 cut(s) | 359 |
| PstNI | CAGNNNCTG | 1 cut(s) | 191 |
| PsuI | RGATCY | 1 cut(s) | 15 |
| RsaI | GTAC | 1 cut(s) | 403 |
| RsaNI | GTAC | 1 cut(s) | 402 |
| RseI | CAYNNNNRTG | 1 cut(s) | 445 |
| SaqAI | TTAA | 4 cut(s) | 5, 68, 96, 444 |
| SatI | GCNGC | 1 cut(s) | 207 |
| Sau3AI | GATC | 2 cut(s) | 15, 472 |
| Sau96I | GGNCC | 1 cut(s) | 359 |
| SduI | GDGCHC | 1 cut(s) | 263 |
| SetI | ASST | 5 cut(s) | 28, 50, 102, 298, 367 |
| SfaNI | GCATC | 3 cut(s) | 184, 193, 418 |
| SfuI | TTCGAA | 1 cut(s) | 421 |
| SinI | GGWCC | 1 cut(s) | 359 |
| SmiI | ATTTAAAT | 1 cut(s) | 445 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 445 |
| SphI | GCATGC | 1 cut(s) | 464 |
| Sse9I | AATT | 4 cut(s) | 30, 91, 319, 410 |
| SsiI | CCGC | 1 cut(s) | 386 |
| SspI | AATATT | 1 cut(s) | 118 |
| SspMI | CTAG | 3 cut(s) | 38, 77, 332 |
| SwaI | ATTTAAAT | 1 cut(s) | 445 |
| TaaI | ACNGT | 1 cut(s) | 392 |
| TaqI | TCGA | 2 cut(s) | 52, 421 |
| TasI | AATT | 4 cut(s) | 30, 91, 319, 410 |
| Tru1I | TTAA | 4 cut(s) | 5, 68, 96, 444 |
| Tru9I | TTAA | 4 cut(s) | 5, 68, 96, 444 |
| TscAI | CASTG | 2 cut(s) | 192, 249 |
| TseFI | GTSAC | 1 cut(s) | 187 |
| TseI | GCWGC | 1 cut(s) | 206 |
| Tsp45I | GTSAC | 1 cut(s) | 187 |
| TspDTI | ATGAA | 3 cut(s) | 147, 422, 429 |
| TspRI | CASTG | 2 cut(s) | 192, 249 |
| VpaK11BI | GGWCC | 1 cut(s) | 359 |
| XapI | RAATTY | 3 cut(s) | 91, 319, 410 |
| XbaI | TCTAGA | 1 cut(s) | 76 |
| XceI | RCATGY | 2 cut(s) | 158, 464 |
| XspI | CTAG | 3 cut(s) | 38, 77, 332 |
| Zsp2I | ATGCAT | 1 cut(s) | 160 |