RchiOBHm_Chr7g0230021
ERF Family

P-loop nucleoside triphosphate hydrolase superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0020603
Physical Location & Seq
Forward (+)
53513510 .. 53514974
1465 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 378 bp
ATGACTGAGAAGAAAATGATGAGACTTTGGAAGATTATTTGGGCTGAAATCCTTGGTCTGTGTGGAAATCGCCATGTGCTTTTTGATAACATGACCAAGGATGAAAGCAAGAGGTTCGAACAAGTGCAGCAGCTTCTCTCGCTTGTGAACTCGGTTATAGCACAGAATGGTGGGCAGCCATACACGGATGGGATATTTGCTGAAGGGAAGAAAGAGGCTATGAAACTTCGTGATCAACAAGAAGAGGTTGCTTCTTTGAAGGCGTATTCAAAACGAGAAATATCTCATTTGAATGAGCAGATGCACCTTGCACATGATCTGCAGCTTAAACGAATTACTGAGATGGTAAATTTTCATCTGCATTTTGTTTGCATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AIG1

Protein Analysis

125

Amino Acids

14.63

Weight (kDa)

7.83

Isoelectric Point (pI)

43.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AIG1 PF04548 16 - 80 2.7e-14 AIG1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020603)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0229641 RchiOBHm_Chr7g0230021
rosa_multiflora Rmu_sc0002666.1_g000017 Rmu_sc0004929.1_g000005 Rmu_sc0028893.1_g000001
rosa_samantha Rh7DG404100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 349
AcuI CTGAAG 1 cut(s) 222
AgsI TTSAA 3 cut(s) 259, 270, 292
AluBI AGCT 2 cut(s) 133, 325
AluI AGCT 2 cut(s) 133, 325
Alw26I GTCTC 1 cut(s) 16
ApeKI GCWGC 4 cut(s) 127, 130, 175, 322
ApoI RAATTY 1 cut(s) 349
AsuII TTCGAA 1 cut(s) 117
BbvI GCAGC 4 cut(s) 139, 142, 187, 334
BccI CCATC 2 cut(s) 182, 337
BcgI CGANNNNNNTGC 2 cut(s) 97, 131
BclI TGATCA 1 cut(s) 232
BcoDI GTCTC 1 cut(s) 16
BfmI CTRYAG 1 cut(s) 320
BisI GCNGC 4 cut(s) 128, 131, 176, 323
BlsI GCNGC 4 cut(s) 129, 132, 177, 324
BmsI GCATC 1 cut(s) 291
Bpu14I TTCGAA 1 cut(s) 117
BsaJI CCNNGG 2 cut(s) 52, 96
BseDI CCNNGG 2 cut(s) 52, 96
BseGI GGATG 2 cut(s) 106, 193
BseMII CTCAG 1 cut(s) 330
BseXI GCAGC 4 cut(s) 139, 142, 187, 334
BsgI GTGCAG 1 cut(s) 146
BsmAI GTCTC 1 cut(s) 16
Bsp119I TTCGAA 1 cut(s) 117
Bsp143I GATC 2 cut(s) 232, 316
BspCNI CTCAG 1 cut(s) 331
BspMAI CTGCAG 1 cut(s) 324
BspT104I TTCGAA 1 cut(s) 117
BssECI CCNNGG 2 cut(s) 52, 96
BssMI GATC 2 cut(s) 232, 316
BssT1I CCWWGG 2 cut(s) 52, 96
Bst6I CTCTTC 1 cut(s) 237
BstBI TTCGAA 1 cut(s) 117
BstDEI CTNAG 2 cut(s) 6, 339
BstF5I GGATG 2 cut(s) 106, 193
BstKTI GATC 2 cut(s) 235, 319
BstMAI GTCTC 1 cut(s) 16
BstMBI GATC 2 cut(s) 232, 316
BstMWI GCNNNNNNNGC 1 cut(s) 139
BstSFI CTRYAG 1 cut(s) 320
BstV1I GCAGC 4 cut(s) 139, 142, 187, 334
BtsCI GGATG 2 cut(s) 106, 193
CviAII CATG 3 cut(s) 74, 91, 314
CviJI RGCY 5 cut(s) 44, 133, 178, 218, 325
CviKI_1 RGCY 5 cut(s) 44, 133, 178, 218, 325
DdeI CTNAG 2 cut(s) 6, 339
DpnI GATC 2 cut(s) 234, 318
DpnII GATC 2 cut(s) 232, 316
Eam1104I CTCTTC 1 cut(s) 237
EarI CTCTTC 1 cut(s) 237
Eco130I CCWWGG 2 cut(s) 52, 96
Eco57I CTGAAG 1 cut(s) 222
EcoT14I CCWWGG 2 cut(s) 52, 96
ErhI CCWWGG 2 cut(s) 52, 96
FaeI CATG 3 cut(s) 77, 94, 317
FaiI YATR 6 cut(s) 75, 92, 158, 181, 221, 315
FatI CATG 3 cut(s) 73, 90, 313
FbaI TGATCA 1 cut(s) 232
Fnu4HI GCNGC 4 cut(s) 128, 131, 176, 323
FokI GGATG 2 cut(s) 113, 200
Fsp4HI GCNGC 4 cut(s) 128, 131, 176, 323
GluI GCNGC 4 cut(s) 128, 131, 176, 323
Hin1II CATG 3 cut(s) 77, 94, 317
Hpy166II GTNNAC 1 cut(s) 148
Hpy188III TCNNGA 1 cut(s) 230
Hpy8I GTNNAC 1 cut(s) 148
HpyAV CCTTC 2 cut(s) 197, 253
HpyCH4V TGCA 6 cut(s) 127, 304, 311, 322, 361, 372
HpyF10VI GCNNNNNNNGC 1 cut(s) 139
HpyF3I CTNAG 2 cut(s) 6, 339
Hsp92II CATG 3 cut(s) 77, 94, 317
Ksp22I TGATCA 1 cut(s) 232
Kzo9I GATC 2 cut(s) 232, 316
Lsp1109I GCAGC 4 cut(s) 139, 142, 187, 334
LweI GCATC 1 cut(s) 291
MalI GATC 2 cut(s) 234, 318
MboI GATC 2 cut(s) 232, 316
MboII GAAGA 4 cut(s) 22, 43, 220, 254
MluCI AATT 2 cut(s) 333, 349
MnlI CCTC 3 cut(s) 105, 208, 238
MseI TTAA 2 cut(s) 327, 376
MslI CAYNNNNRTG 1 cut(s) 291
MwoI GCNNNNNNNGC 1 cut(s) 139
NdeII GATC 2 cut(s) 232, 316
NlaIII CATG 3 cut(s) 77, 94, 317
NspV TTCGAA 1 cut(s) 117
PkrI GCNGC 4 cut(s) 129, 132, 177, 324
PstI CTGCAG 1 cut(s) 324
RseI CAYNNNNRTG 1 cut(s) 291
SaqAI TTAA 2 cut(s) 327, 376
SatI GCNGC 4 cut(s) 128, 131, 176, 323
Sau3AI GATC 2 cut(s) 232, 316
SetI ASST 5 cut(s) 116, 135, 249, 309, 327
SfaNI GCATC 1 cut(s) 291
SfcI CTRYAG 1 cut(s) 320
SfuI TTCGAA 1 cut(s) 117
SmiMI CAYNNNNRTG 1 cut(s) 291
Sse9I AATT 2 cut(s) 333, 349
StyI CCWWGG 2 cut(s) 52, 96
TaqI TCGA 1 cut(s) 117
TasI AATT 2 cut(s) 333, 349
Tru1I TTAA 2 cut(s) 327, 376
Tru9I TTAA 2 cut(s) 327, 376
TseI GCWGC 4 cut(s) 127, 130, 175, 322
TspDTI ATGAA 3 cut(s) 117, 236, 344
TspGWI ACGGA 1 cut(s) 200
XapI RAATTY 1 cut(s) 349
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.