Rmu_sc0028893.1_g000001
ERF Family

P-loop nucleoside triphosphate hydrolase superfamily protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0028893.1
Physical Location & Seq
Forward (+)
1 .. 902
902 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0028893.1_g000001.1.cds

Sequence Viewer

Length: 254 bp
tgcagcagcttctctcgcttgtgaactcggttatagcacagaatggtgggcagccatacacggatgggatatttgctgaagggaagaaagaggctatgaaacttcgtgatcaacaagaagaggttgcttctttgaaggcgtattcaaaacgagaaatatctcatttgaatgagcagatgcaccttgcacatgatctgcagcttaaacgaattactgagatggtaaattttcatctgcattttgtttgcatttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

83

Amino Acids

9.52

Weight (kDa)

6.56

Isoelectric Point (pI)

40.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0020603)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 225
AcuI CTGAAG 1 cut(s) 98
AgsI TTSAA 3 cut(s) 135, 146, 168
AluBI AGCT 2 cut(s) 9, 201
AluI AGCT 2 cut(s) 9, 201
ApeKI GCWGC 4 cut(s) 3, 6, 51, 198
ApoI RAATTY 1 cut(s) 225
BbvI GCAGC 4 cut(s) 15, 18, 63, 210
BccI CCATC 2 cut(s) 58, 213
BclI TGATCA 1 cut(s) 108
BfmI CTRYAG 1 cut(s) 196
BisI GCNGC 4 cut(s) 4, 7, 52, 199
BlsI GCNGC 4 cut(s) 5, 8, 53, 200
BmsI GCATC 1 cut(s) 167
BseGI GGATG 1 cut(s) 69
BseMII CTCAG 1 cut(s) 206
BseXI GCAGC 4 cut(s) 15, 18, 63, 210
Bsp143I GATC 2 cut(s) 108, 192
BspCNI CTCAG 1 cut(s) 207
BspMAI CTGCAG 1 cut(s) 200
BssMI GATC 2 cut(s) 108, 192
Bst6I CTCTTC 1 cut(s) 113
BstDEI CTNAG 1 cut(s) 215
BstF5I GGATG 1 cut(s) 69
BstKTI GATC 2 cut(s) 111, 195
BstMBI GATC 2 cut(s) 108, 192
BstMWI GCNNNNNNNGC 1 cut(s) 15
BstSFI CTRYAG 1 cut(s) 196
BstV1I GCAGC 4 cut(s) 15, 18, 63, 210
BtsCI GGATG 1 cut(s) 69
CviAII CATG 1 cut(s) 190
CviJI RGCY 4 cut(s) 9, 54, 94, 201
CviKI_1 RGCY 4 cut(s) 9, 54, 94, 201
DdeI CTNAG 1 cut(s) 215
DpnI GATC 2 cut(s) 110, 194
DpnII GATC 2 cut(s) 108, 192
Eam1104I CTCTTC 1 cut(s) 113
EarI CTCTTC 1 cut(s) 113
Eco57I CTGAAG 1 cut(s) 98
FaeI CATG 1 cut(s) 193
FaiI YATR 4 cut(s) 34, 57, 97, 191
FatI CATG 1 cut(s) 189
FbaI TGATCA 1 cut(s) 108
Fnu4HI GCNGC 4 cut(s) 4, 7, 52, 199
FokI GGATG 1 cut(s) 76
Fsp4HI GCNGC 4 cut(s) 4, 7, 52, 199
GluI GCNGC 4 cut(s) 4, 7, 52, 199
Hin1II CATG 1 cut(s) 193
Hpy166II GTNNAC 1 cut(s) 24
Hpy188III TCNNGA 1 cut(s) 106
Hpy8I GTNNAC 1 cut(s) 24
HpyAV CCTTC 2 cut(s) 73, 129
HpyCH4V TGCA 6 cut(s) 3, 180, 187, 198, 237, 248
HpyF10VI GCNNNNNNNGC 1 cut(s) 15
HpyF3I CTNAG 1 cut(s) 215
Hsp92II CATG 1 cut(s) 193
Ksp22I TGATCA 1 cut(s) 108
Kzo9I GATC 2 cut(s) 108, 192
Lsp1109I GCAGC 4 cut(s) 15, 18, 63, 210
LweI GCATC 1 cut(s) 167
MalI GATC 2 cut(s) 110, 194
MboI GATC 2 cut(s) 108, 192
MboII GAAGA 2 cut(s) 96, 130
MluCI AATT 2 cut(s) 209, 225
MnlI CCTC 2 cut(s) 84, 114
MseI TTAA 2 cut(s) 203, 252
MslI CAYNNNNRTG 1 cut(s) 167
MwoI GCNNNNNNNGC 1 cut(s) 15
NdeII GATC 2 cut(s) 108, 192
NlaIII CATG 1 cut(s) 193
PkrI GCNGC 4 cut(s) 5, 8, 53, 200
PstI CTGCAG 1 cut(s) 200
RseI CAYNNNNRTG 1 cut(s) 167
SaqAI TTAA 2 cut(s) 203, 252
SatI GCNGC 4 cut(s) 4, 7, 52, 199
Sau3AI GATC 2 cut(s) 108, 192
SetI ASST 4 cut(s) 11, 125, 185, 203
SfaNI GCATC 1 cut(s) 167
SfcI CTRYAG 1 cut(s) 196
SgeI CNNG 9 cut(s) 27, 31, 39, 72, 118, 127, 163, 196, 202
SmiMI CAYNNNNRTG 1 cut(s) 167
Sse9I AATT 2 cut(s) 209, 225
TasI AATT 2 cut(s) 209, 225
Tru1I TTAA 2 cut(s) 203, 252
Tru9I TTAA 2 cut(s) 203, 252
TseI GCWGC 4 cut(s) 3, 6, 51, 198
TspDTI ATGAA 2 cut(s) 112, 220
TspGWI ACGGA 1 cut(s) 76
XapI RAATTY 1 cut(s) 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.