Rh7DG404100
ERF Family

P-loop nucleoside triphosphate hydrolase superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0020603
Physical Location & Seq
Forward (+)
55890894 .. 55895457
4564 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG404100.1

Sequence Viewer

Length: 603 bp
ATGATGGGTGGAAGTTCGATTGATGATGACTGGGAGCTTCCCTTTTCTAATGCTGCTCGCACTGTGGTCTTGGTTGGACGCACTGGTAATGGAAAAAGCGCAACAGGCAACAGCATTCTTGGCAAAAAAGCCTTCAATTCCAAGCGTAGCTCTAATGGTGTCACGAGCACTTGTGAATTGAAGACTGCTATCTTGAGAGATGGACAAGAAGTTAATGTCCTGGAAATCCTTGGTCTGTGTGGAAATCGCCGTGTGCTTTTTGATAACATGACCAAGGATGAAAGCAAGAGGTTCGAACAAGTGCAGCAGCTTCTCTCGCTTGTGAACTCGGTTATAGCACAGAATGGTGGGCGGCCATACACGGATGGGATATTTGCTGAAGTGAAGAAAGGGGCTATGAAACTTCGTGATCAACAAGAAGAGGTTGCTTCTTTGAAGGCGTATTCAAAACGAGAAATATCTCATTTGAATGATCAGATGCACCTTGCACATGATCTGCAGCTTAAACGAATTACTGAGATGATAATTGAGGGGTTCTTCAGATTGCCTCAAGATTTGTTAATGAATCTGGGCTTTGCTGTGATTTTCACCATGGAGATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AIG1

Protein Analysis

200

Amino Acids

22.23

Weight (kDa)

7.77

Isoelectric Point (pI)

43.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AIG1 PF04548 20 - 74 1.1e-18 AIG1 family
AIG1 PF04548 75 - 139 1.1e-13 AIG1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0020603)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0229641 RchiOBHm_Chr7g0230021
rosa_multiflora Rmu_sc0002666.1_g000017 Rmu_sc0004929.1_g000005 Rmu_sc0028893.1_g000001
rosa_samantha Rh7DG404100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 352
AcoI YGGCCR 1 cut(s) 353
AcuI CTGAAG 2 cut(s) 399, 523
AgsI TTSAA 5 cut(s) 136, 181, 436, 447, 469
AjnI CCWGG 1 cut(s) 219
AluBI AGCT 4 cut(s) 37, 150, 310, 502
AluI AGCT 4 cut(s) 37, 150, 310, 502
Alw21I GWGCWC 1 cut(s) 170
AoxI GGCC 1 cut(s) 353
ApeKI GCWGC 4 cut(s) 53, 304, 307, 499
AspLEI GCGC 1 cut(s) 101
AsuHPI GGTGA 1 cut(s) 580
AsuII TTCGAA 1 cut(s) 294
BauI CACGAG 1 cut(s) 163
BbsI GAAGAC 1 cut(s) 188
Bbv12I GWGCWC 1 cut(s) 170
BbvI GCAGC 4 cut(s) 40, 316, 319, 511
BccI CCATC 2 cut(s) 194, 359
BceAI ACGGC 1 cut(s) 234
BcgI CGANNNNNNTGC 2 cut(s) 274, 308
BciT130I CCWGG 1 cut(s) 221
BclI TGATCA 2 cut(s) 409, 472
BfmI CTRYAG 1 cut(s) 497
BisI GCNGC 5 cut(s) 54, 305, 308, 353, 500
BlsI GCNGC 5 cut(s) 55, 306, 309, 354, 501
Bme1390I CCNGG 1 cut(s) 221
BmrFI CCNGG 1 cut(s) 221
BmrI ACTGGG 1 cut(s) 40
BmsI GCATC 1 cut(s) 468
BmuI ACTGGG 1 cut(s) 40
BpiI GAAGAC 1 cut(s) 188
Bpu14I TTCGAA 1 cut(s) 294
BpuEI CTTGAG 2 cut(s) 214, 534
BsaJI CCNNGG 3 cut(s) 229, 273, 591
Bse1I ACTGG 2 cut(s) 35, 88
BseBI CCWGG 1 cut(s) 221
BseDI CCNNGG 3 cut(s) 229, 273, 591
BseGI GGATG 2 cut(s) 283, 370
BseMII CTCAG 1 cut(s) 507
BseNI ACTGG 2 cut(s) 35, 88
BseXI GCAGC 4 cut(s) 40, 316, 319, 511
BsgI GTGCAG 1 cut(s) 323
BshFI GGCC 1 cut(s) 355
BsiHKAI GWGCWC 1 cut(s) 170
BsmI GAATGC 1 cut(s) 114
BsnI GGCC 1 cut(s) 355
Bsp119I TTCGAA 1 cut(s) 294
Bsp1286I GDGCHC 1 cut(s) 170
Bsp143I GATC 3 cut(s) 409, 472, 493
Bsp19I CCATGG 1 cut(s) 591
BspACI CCGC 1 cut(s) 352
BspANI GGCC 1 cut(s) 355
BspCNI CTCAG 1 cut(s) 508
BspMAI CTGCAG 1 cut(s) 501
BspT104I TTCGAA 1 cut(s) 294
BsrI ACTGG 2 cut(s) 35, 88
BssECI CCNNGG 3 cut(s) 229, 273, 591
BssMI GATC 3 cut(s) 409, 472, 493
BssSI CACGAG 1 cut(s) 163
BssT1I CCWWGG 3 cut(s) 229, 273, 591
Bst2BI CACGAG 1 cut(s) 163
Bst2UI CCWGG 1 cut(s) 221
Bst4CI ACNGT 1 cut(s) 64
Bst6I CTCTTC 1 cut(s) 414
BstBI TTCGAA 1 cut(s) 294
BstC8I GCNNGC 1 cut(s) 58
BstDEI CTNAG 1 cut(s) 516
BstDSI CCRYGG 1 cut(s) 591
BstF5I GGATG 2 cut(s) 283, 370
BstHHI GCGC 1 cut(s) 101
BstKTI GATC 3 cut(s) 412, 475, 496
BstMBI GATC 3 cut(s) 409, 472, 493
BstMWI GCNNNNNNNGC 3 cut(s) 105, 120, 316
BstNI CCWGG 1 cut(s) 221
BstSCI CCNGG 1 cut(s) 219
BstSFI CTRYAG 1 cut(s) 497
BstV1I GCAGC 4 cut(s) 40, 316, 319, 511
BstV2I GAAGAC 1 cut(s) 188
BsuRI GGCC 1 cut(s) 355
BtgI CCRYGG 1 cut(s) 591
BtsCI GGATG 2 cut(s) 283, 370
BtsIMutI CAGTG 2 cut(s) 60, 81
Cac8I GCNNGC 1 cut(s) 58
CfoI GCGC 1 cut(s) 101
CseI GACGC 1 cut(s) 87
CviAII CATG 3 cut(s) 268, 491, 592
CviJI RGCY 8 cut(s) 37, 131, 150, 310, 355, 395, 502, 573
CviKI_1 RGCY 8 cut(s) 37, 131, 150, 310, 355, 395, 502, 573
DdeI CTNAG 1 cut(s) 516
DpnI GATC 3 cut(s) 411, 474, 495
DpnII GATC 3 cut(s) 409, 472, 493
EaeI YGGCCR 1 cut(s) 353
Eam1104I CTCTTC 1 cut(s) 414
EarI CTCTTC 1 cut(s) 414
Eco130I CCWWGG 3 cut(s) 229, 273, 591
Eco57I CTGAAG 2 cut(s) 399, 523
EcoRII CCWGG 1 cut(s) 219
EcoT14I CCWWGG 3 cut(s) 229, 273, 591
ErhI CCWWGG 3 cut(s) 229, 273, 591
FaeI CATG 3 cut(s) 271, 494, 595
FaiI YATR 6 cut(s) 269, 335, 358, 398, 492, 593
FatI CATG 3 cut(s) 267, 490, 591
FbaI TGATCA 2 cut(s) 409, 472
Fnu4HI GCNGC 5 cut(s) 54, 305, 308, 353, 500
FokI GGATG 2 cut(s) 290, 377
Fsp4HI GCNGC 5 cut(s) 54, 305, 308, 353, 500
GlaI GCGC 1 cut(s) 100
GluI GCNGC 5 cut(s) 54, 305, 308, 353, 500
HaeIII GGCC 1 cut(s) 355
HgaI GACGC 1 cut(s) 87
HhaI GCGC 1 cut(s) 101
Hin1II CATG 3 cut(s) 271, 494, 595
Hin6I GCGC 1 cut(s) 99
HinP1I GCGC 1 cut(s) 99
HinfI GANTC 1 cut(s) 565
HphI GGTGA 1 cut(s) 580
Hpy166II GTNNAC 1 cut(s) 325
Hpy188I TCNGA 2 cut(s) 477, 542
Hpy188III TCNNGA 4 cut(s) 163, 193, 407, 551
Hpy8I GTNNAC 1 cut(s) 325
HpyAV CCTTC 2 cut(s) 142, 430
HpyCH4III ACNGT 1 cut(s) 64
HpyCH4V TGCA 4 cut(s) 304, 481, 488, 499
HpyF10VI GCNNNNNNNGC 3 cut(s) 105, 120, 316
HpyF3I CTNAG 1 cut(s) 516
Hsp92II CATG 3 cut(s) 271, 494, 595
HspAI GCGC 1 cut(s) 99
Ksp22I TGATCA 2 cut(s) 409, 472
Kzo9I GATC 3 cut(s) 409, 472, 493
LmnI GCTCC 1 cut(s) 34
LpnPI CCDG 6 cut(s) 16, 69, 90, 206, 233, 554
Lsp1109I GCAGC 4 cut(s) 40, 316, 319, 511
LweI GCATC 1 cut(s) 468
MaeIII GTNAC 1 cut(s) 160
MalI GATC 3 cut(s) 411, 474, 495
MboI GATC 3 cut(s) 409, 472, 493
MboII GAAGA 4 cut(s) 193, 397, 431, 529
MhlI GDGCHC 1 cut(s) 170
MluCI AATT 4 cut(s) 136, 176, 510, 525
MmeI TCCRAC 1 cut(s) 55
MnlI CCTC 4 cut(s) 282, 415, 523, 558
MseI TTAA 3 cut(s) 213, 504, 560
MslI CAYNNNNRTG 1 cut(s) 468
MspR9I CCNGG 1 cut(s) 221
Mva1269I GAATGC 1 cut(s) 114
MvaI CCWGG 1 cut(s) 221
MwoI GCNNNNNNNGC 3 cut(s) 105, 120, 316
NcoI CCATGG 1 cut(s) 591
NdeII GATC 3 cut(s) 409, 472, 493
NlaIII CATG 3 cut(s) 271, 494, 595
NmuCI GTSAC 1 cut(s) 160
NspV TTCGAA 1 cut(s) 294
PctI GAATGC 1 cut(s) 114
PfeI GAWTC 1 cut(s) 565
PfoI TCCNGGA 1 cut(s) 219
PkrI GCNGC 5 cut(s) 55, 306, 309, 354, 501
Psp6I CCWGG 1 cut(s) 219
PspGI CCWGG 1 cut(s) 219
PstI CTGCAG 1 cut(s) 501
RseI CAYNNNNRTG 1 cut(s) 468
SaqAI TTAA 3 cut(s) 213, 504, 560
SatI GCNGC 5 cut(s) 54, 305, 308, 353, 500
Sau3AI GATC 3 cut(s) 409, 472, 493
ScrFI CCNGG 1 cut(s) 221
SduI GDGCHC 1 cut(s) 170
SetI ASST 7 cut(s) 39, 152, 293, 312, 426, 486, 504
SfaNI GCATC 1 cut(s) 468
SfcI CTRYAG 1 cut(s) 497
SfuI TTCGAA 1 cut(s) 294
SmiMI CAYNNNNRTG 1 cut(s) 468
SmlI CTYRAG 2 cut(s) 193, 549
SmoI CTYRAG 2 cut(s) 193, 549
Sse9I AATT 4 cut(s) 136, 176, 510, 525
SsiI CCGC 1 cut(s) 352
StyD4I CCNGG 1 cut(s) 219
StyI CCWWGG 3 cut(s) 229, 273, 591
TaaI ACNGT 1 cut(s) 64
TaqI TCGA 2 cut(s) 17, 294
TasI AATT 4 cut(s) 136, 176, 510, 525
TauI GCSGC 1 cut(s) 355
TfiI GAWTC 1 cut(s) 565
Tru1I TTAA 3 cut(s) 213, 504, 560
Tru9I TTAA 3 cut(s) 213, 504, 560
TscAI CASTG 2 cut(s) 67, 88
TseFI GTSAC 1 cut(s) 160
TseI GCWGC 4 cut(s) 53, 304, 307, 499
Tsp45I GTSAC 1 cut(s) 160
TspDTI ATGAA 3 cut(s) 294, 413, 578
TspGWI ACGGA 1 cut(s) 377
TspRI CASTG 2 cut(s) 67, 88
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.