RchiOBHm_Chr6g0248971
NAC Family

inactive poly ADP-ribose polymerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0020586
Physical Location & Seq
Forward (+)
4837683 .. 4838385
703 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 429 bp
ATGATATGGAGTATTGAGTTTACGAAGAAGAAATTTTTCCATGGGTATGGAATCGGGACGCCAAGGGAGAGCCCAGGTCTCATGGTGTTGGGAGTTCAATTGTATGCTGATAACTATTCTTTTGAGGCTGATGAGAATGGGCTGAGGCACATGTTGCTGTGCAAAGTCATATTGGGGAAGAGAGAATTGGACAATTTGATGCCTCCTCTCACCGGGAACGTCTTCGTTGCTCCGAAGCTCGTCTTGTTTGGGCCCAGACACTTGATATGCACGTGTAAATTGAGTTTTATCCAAACCGGAGTAAATTCATTTATTTGGATCTCGTCAACTCAATTCTTTTTGTTTCTCTTTGATTCTATTCGAATGAATCATTCAGATCTTGAATTTCCACACGAAGTGAATTCCAATTTGCAGGGAATTTGGAACTAG

Protein Analysis

142

Amino Acids

16.29

Weight (kDa)

6.95

Isoelectric Point (pI)

30.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0020586)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0248971
rosa_laevigata RLG00000002300 RLG00000006534
rosa_multiflora Rmu_sc0008653.1_g000001
rosa_roxburghii Rroxscaffold_5G00371440 Rroxscaffold_7G00195990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 326
AcsI RAATTY 5 cut(s) 32, 304, 383, 400, 417
AcvI CACGTG 1 cut(s) 273
AcyI GRCGYC 1 cut(s) 59
AdeI CACNNNGTG 1 cut(s) 397
AfiI CCNNNNNNNGG 1 cut(s) 212
AflIII ACRYGT 2 cut(s) 150, 272
AgsI TTSAA 2 cut(s) 98, 383
AjnI CCWGG 1 cut(s) 73
AjuI GAANNNNNNNTTGG 2 cut(s) 170, 202
AluBI AGCT 1 cut(s) 238
AluI AGCT 1 cut(s) 238
Alw26I GTCTC 1 cut(s) 83
AlwI GGATC 1 cut(s) 326
AoxI GGCC 1 cut(s) 251
ApaI GGGCCC 1 cut(s) 255
ApoI RAATTY 5 cut(s) 32, 304, 383, 400, 417
Asp700I GAANNNNTTC 2 cut(s) 35, 221
AspS9I GGNCC 2 cut(s) 251, 252
AsuC2I CCSGG 1 cut(s) 214
AsuHPI GGTGA 1 cut(s) 202
AsuII TTCGAA 1 cut(s) 361
BaeGI GKGCMC 1 cut(s) 255
BanII GRGCYC 2 cut(s) 74, 255
BbrPI CACGTG 1 cut(s) 273
BbsI GAAGAC 1 cut(s) 214
BbvCI CCTCAGC 1 cut(s) 143
BciT130I CCWGG 1 cut(s) 75
BcnI CCSGG 1 cut(s) 214
BcoDI GTCTC 1 cut(s) 83
BfaI CTAG 1 cut(s) 427
BglII AGATCT 1 cut(s) 376
Bme1390I CCNGG 2 cut(s) 75, 214
BmgT120I GGNCC 2 cut(s) 251, 252
BmiI GGNNCC 1 cut(s) 253
BmrFI CCNGG 2 cut(s) 75, 214
BmsI GCATC 1 cut(s) 189
BpiI GAAGAC 1 cut(s) 214
Bpu10I CCTNAGC 1 cut(s) 143
Bpu14I TTCGAA 1 cut(s) 361
BpuMI CCSGG 1 cut(s) 214
BsaAI YACGTR 1 cut(s) 273
BsaHI GRCGYC 1 cut(s) 59
BsaI GGTCTC 1 cut(s) 83
BsaJI CCNNGG 3 cut(s) 40, 62, 73
BsaWI WCCGGW 1 cut(s) 296
Bsc4I CCNNNNNNNGG 1 cut(s) 212
BseBI CCWGG 1 cut(s) 75
BseDI CCNNGG 3 cut(s) 40, 62, 73
BseLI CCNNNNNNNGG 1 cut(s) 212
BseMII CTCAG 1 cut(s) 134
BseRI GAGGAG 1 cut(s) 195
BseSI GKGCMC 1 cut(s) 255
BshFI GGCC 1 cut(s) 253
BsiSI CCGG 2 cut(s) 213, 297
BslFI GGGAC 1 cut(s) 70
BslI CCNNNNNNNGG 1 cut(s) 212
BsmAI GTCTC 1 cut(s) 83
BsmFI GGGAC 1 cut(s) 70
BsnI GGCC 1 cut(s) 253
Bso31I GGTCTC 1 cut(s) 83
Bsp119I TTCGAA 1 cut(s) 361
Bsp120I GGGCCC 1 cut(s) 251
Bsp1286I GDGCHC 2 cut(s) 74, 255
Bsp143I GATC 2 cut(s) 318, 376
Bsp19I CCATGG 1 cut(s) 40
BspANI GGCC 1 cut(s) 253
BspCNI CTCAG 1 cut(s) 135
BspLI GGNNCC 1 cut(s) 253
BspPI GGATC 1 cut(s) 326
BspT104I TTCGAA 1 cut(s) 361
BspTNI GGTCTC 1 cut(s) 83
BssECI CCNNGG 3 cut(s) 40, 62, 73
BssMI GATC 2 cut(s) 318, 376
BssNI GRCGYC 1 cut(s) 59
BssT1I CCWWGG 2 cut(s) 40, 62
Bst2UI CCWGG 1 cut(s) 75
Bst6I CTCTTC 1 cut(s) 173
BstACI GRCGYC 1 cut(s) 59
BstAPI GCANNNNNTGC 1 cut(s) 154
BstBAI YACGTR 1 cut(s) 273
BstBI TTCGAA 1 cut(s) 361
BstDEI CTNAG 1 cut(s) 143
BstDSI CCRYGG 1 cut(s) 40
BstKTI GATC 2 cut(s) 321, 379
BstMAI GTCTC 1 cut(s) 83
BstMBI GATC 2 cut(s) 318, 376
BstMWI GCNNNNNNNGC 1 cut(s) 154
BstNI CCWGG 1 cut(s) 75
BstNSI RCATGY 1 cut(s) 154
BstSCI CCNGG 2 cut(s) 73, 212
BstSLI GKGCMC 1 cut(s) 255
BstV2I GAAGAC 1 cut(s) 214
BstX2I RGATCY 2 cut(s) 318, 376
BstXI CCANNNNNNTGG 1 cut(s) 47
BstYI RGATCY 2 cut(s) 318, 376
BsuRI GGCC 1 cut(s) 253
BtgI CCRYGG 1 cut(s) 40
Cfr13I GGNCC 2 cut(s) 251, 252
CseI GACGC 1 cut(s) 67
CviAII CATG 3 cut(s) 41, 82, 151
CviJI RGCY 5 cut(s) 72, 128, 142, 238, 253
CviKI_1 RGCY 5 cut(s) 72, 128, 142, 238, 253
DdeI CTNAG 1 cut(s) 143
DpnI GATC 2 cut(s) 320, 378
DpnII GATC 2 cut(s) 318, 376
DraIII CACNNNGTG 1 cut(s) 397
Eam1104I CTCTTC 1 cut(s) 173
EarI CTCTTC 1 cut(s) 173
Eco130I CCWWGG 2 cut(s) 40, 62
Eco24I GRGCYC 2 cut(s) 74, 255
Eco31I GGTCTC 1 cut(s) 83
Eco72I CACGTG 1 cut(s) 273
EcoRI GAATTC 1 cut(s) 400
EcoRII CCWGG 1 cut(s) 73
EcoT14I CCWWGG 2 cut(s) 40, 62
EcoT38I GRGCYC 2 cut(s) 74, 255
ErhI CCWWGG 2 cut(s) 40, 62
FaeI CATG 3 cut(s) 44, 85, 154
FaiI YATR 8 cut(s) 7, 42, 48, 83, 105, 152, 170, 268
FalI AAGNNNNNCTT 2 cut(s) 227, 259
FaqI GGGAC 1 cut(s) 70
FatI CATG 3 cut(s) 40, 81, 150
FriOI GRGCYC 2 cut(s) 74, 255
FspBI CTAG 1 cut(s) 427
HaeIII GGCC 1 cut(s) 253
HapII CCGG 2 cut(s) 213, 297
HgaI GACGC 1 cut(s) 67
Hin1I GRCGYC 1 cut(s) 59
Hin1II CATG 3 cut(s) 44, 85, 154
HincII GTYRAC 1 cut(s) 327
HindII GTYRAC 1 cut(s) 327
HinfI GANTC 3 cut(s) 51, 353, 367
HpaII CCGG 2 cut(s) 213, 297
HphI GGTGA 1 cut(s) 202
Hpy166II GTNNAC 2 cut(s) 21, 327
Hpy188I TCNGA 2 cut(s) 234, 376
Hpy188III TCNNGA 2 cut(s) 55, 380
Hpy8I GTNNAC 2 cut(s) 21, 327
HpyCH4IV ACGT 2 cut(s) 219, 272
HpyCH4V TGCA 3 cut(s) 162, 270, 412
HpyF10VI GCNNNNNNNGC 1 cut(s) 154
HpyF3I CTNAG 1 cut(s) 143
HpySE526I ACGT 2 cut(s) 219, 272
Hsp92I GRCGYC 1 cut(s) 59
Hsp92II CATG 3 cut(s) 44, 85, 154
Kzo9I GATC 2 cut(s) 318, 376
LmnI GCTCC 1 cut(s) 235
LpnPI CCDG 6 cut(s) 60, 87, 226, 268, 310, 398
LweI GCATC 1 cut(s) 189
MaeI CTAG 1 cut(s) 427
MaeII ACGT 2 cut(s) 219, 272
MalI GATC 2 cut(s) 320, 378
MboI GATC 2 cut(s) 318, 376
MboII GAAGA 4 cut(s) 37, 40, 190, 214
MfeI CAATTG 1 cut(s) 98
MflI RGATCY 2 cut(s) 318, 376
MhlI GDGCHC 2 cut(s) 74, 255
MnlI CCTC 4 cut(s) 118, 138, 213, 216
MroXI GAANNNNTTC 2 cut(s) 35, 221
MslI CAYNNNNRTG 1 cut(s) 45
MspI CCGG 2 cut(s) 213, 297
MspR9I CCNGG 2 cut(s) 75, 214
MunI CAATTG 1 cut(s) 98
MvaI CCWGG 1 cut(s) 75
MwoI GCNNNNNNNGC 1 cut(s) 154
NciI CCSGG 1 cut(s) 214
NcoI CCATGG 1 cut(s) 40
NdeII GATC 2 cut(s) 318, 376
NlaIII CATG 3 cut(s) 44, 85, 154
NlaIV GGNNCC 1 cut(s) 253
NspI RCATGY 1 cut(s) 154
NspV TTCGAA 1 cut(s) 361
PciI ACATGT 1 cut(s) 150
PdmI GAANNNNTTC 2 cut(s) 35, 221
PfeI GAWTC 3 cut(s) 51, 353, 367
PmaCI CACGTG 1 cut(s) 273
PmlI CACGTG 1 cut(s) 273
Ppu21I YACGTR 1 cut(s) 273
PscI ACATGT 1 cut(s) 150
Psp6I CCWGG 1 cut(s) 73
PspCI CACGTG 1 cut(s) 273
PspGI CCWGG 1 cut(s) 73
PspN4I GGNNCC 1 cut(s) 253
PspOMI GGGCCC 1 cut(s) 251
PspPI GGNCC 2 cut(s) 251, 252
PsuI RGATCY 2 cut(s) 318, 376
RseI CAYNNNNRTG 1 cut(s) 45
Sau3AI GATC 2 cut(s) 318, 376
Sau96I GGNCC 2 cut(s) 251, 252
ScrFI CCNGG 2 cut(s) 75, 214
SduI GDGCHC 2 cut(s) 74, 255
SetI ASST 4 cut(s) 79, 222, 240, 275
SfaNI GCATC 1 cut(s) 189
SfuI TTCGAA 1 cut(s) 361
SmiMI CAYNNNNRTG 1 cut(s) 45
SspMI CTAG 1 cut(s) 427
StyD4I CCNGG 2 cut(s) 73, 212
StyI CCWWGG 2 cut(s) 40, 62
TaiI ACGT 2 cut(s) 222, 275
TaqI TCGA 1 cut(s) 361
TfiI GAWTC 3 cut(s) 51, 353, 367
TspDTI ATGAA 2 cut(s) 297, 380
XapI RAATTY 5 cut(s) 32, 304, 383, 400, 417
XceI RCATGY 1 cut(s) 154
XmnI GAANNNNTTC 2 cut(s) 35, 221
XspI CTAG 1 cut(s) 427
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.