Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0020586

Physical Location & Seq

Genomic Coordinates Reverse (-)

31846153 .. 31851415

Gene Structure 5263 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002300

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGATTGTTGATGATGACGGAAAAAGCCACGATTCTGGGTCTGATTGCTCCGAATCGAGCTCCCGCGCCTCAATTGTTTCGGATCTCTTCGAGGTTTTCAATCAGATGAGATTGGTTATGTTAGAAGAAGATGATATGGAGTATGAGTTTACGAAGAAGATGTTTTCCATGGGTGTGGAATCGACCGAAGTAGACGCCAAGGGAGAGCCCAGTGACAAATTACGGGCATCAACAAGTGCAATATCAACAGCTGATATTGCAAATGACTTTACTCTTGGAGTACTTGGCGAACCATTTTCATTCACTCAGTGTCAGAACAAAGTTACAGTTGCAGAAGCTGCGGGTATTATAGGCGAGACAGCTGAGGTGGAACGGTTCATCAGGGACCATGTAAAGTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005047 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005785 GO:0005789 GO:0005791 GO:0012505 GO:0016020 GO:0030867 GO:0031090 GO:0031984 GO:0032991 GO:0042175 GO:0043021 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0098588 GO:0098796 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

SRPRB

Protein Analysis

134

Amino Acids

14.55

Weight (kDa)

4.3

Isoelectric Point (pI)

22.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020586)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0248971
rosa_laevigata	RLG00000002300 RLG00000006534
rosa_multiflora	Rmu_sc0008653.1_g000001
rosa_roxburghii	Rroxscaffold_5G00371440 Rroxscaffold_7G00195990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	192
AccII	CGCG	1 cut(s)	66
AciI	CCGC	2 cut(s)	64, 341
AclWI	GGATC	1 cut(s)	90
AcyI	GRCGYC	1 cut(s)	195
AdeI	CACNNNGTG	1 cut(s)	309
AfaI	GTAC	1 cut(s)	282
AgsI	TTSAA	1 cut(s)	100
AluBI	AGCT	4 cut(s)	60, 251, 338, 362
AluI	AGCT	4 cut(s)	60, 251, 338, 362
Alw21I	GWGCWC	1 cut(s)	62
Alw26I	GTCTC	1 cut(s)	350
AlwI	GGATC	1 cut(s)	90
AlwNI	CAGNNNCTG	1 cut(s)	338
ApeKI	GCWGC	1 cut(s)	338
AspLEI	GCGC	1 cut(s)	68
AspS9I	GGNCC	1 cut(s)	385
AvaII	GGWCC	1 cut(s)	385
BanII	GRGCYC	2 cut(s)	62, 210
Bbv12I	GWGCWC	1 cut(s)	62
BbvCI	CCTCAGC	1 cut(s)	363
BbvI	GCAGC	1 cut(s)	325
BcoDI	GTCTC	1 cut(s)	350
BisI	GCNGC	1 cut(s)	339
BlsI	GCNGC	1 cut(s)	340
BmcAI	AGTACT	1 cut(s)	282
Bme18I	GGWCC	1 cut(s)	385
BmgT120I	GGNCC	1 cut(s)	385
BmiI	GGNNCC	1 cut(s)	386
BmrI	ACTGGG	1 cut(s)	204
BmsI	GCATC	1 cut(s)	236
BmuI	ACTGGG	1 cut(s)	204
Bpu10I	CCTNAGC	1 cut(s)	363
BsaHI	GRCGYC	1 cut(s)	195
BsaJI	CCNNGG	2 cut(s)	168, 198
BsaXI	ACNNNNNCTCC	2 cut(s)	131, 161
Bse1I	ACTGG	1 cut(s)	210
BseDI	CCNNGG	2 cut(s)	168, 198
BseMII	CTCAG	2 cut(s)	320, 354
BseNI	ACTGG	1 cut(s)	210
BseXI	GCAGC	1 cut(s)	325
Bsh1236I	CGCG	1 cut(s)	66
Bsh1285I	CGRYCG	1 cut(s)	186
BsiEI	CGRYCG	1 cut(s)	186
BsiHKAI	GWGCWC	1 cut(s)	62
BslFI	GGGAC	1 cut(s)	398
BsmAI	GTCTC	1 cut(s)	350
BsmFI	GGGAC	1 cut(s)	398
Bsp1286I	GDGCHC	2 cut(s)	62, 210
Bsp143I	GATC	1 cut(s)	82
Bsp19I	CCATGG	1 cut(s)	168
BspACI	CCGC	2 cut(s)	64, 341
BspCNI	CTCAG	2 cut(s)	319, 355
BspFNI	CGCG	1 cut(s)	66
BspLI	GGNNCC	1 cut(s)	386
BspPI	GGATC	1 cut(s)	90
BsrI	ACTGG	1 cut(s)	210
BssECI	CCNNGG	2 cut(s)	168, 198
BssMI	GATC	1 cut(s)	82
BssNI	GRCGYC	1 cut(s)	195
BssT1I	CCWWGG	2 cut(s)	168, 198
Bst4CI	ACNGT	2 cut(s)	328, 375
Bst6I	CTCTTC	1 cut(s)	92
BstACI	GRCGYC	1 cut(s)	195
BstAPI	GCANNNNNTGC	1 cut(s)	338
BstDEI	CTNAG	3 cut(s)	306, 363, 399
BstDSI	CCRYGG	1 cut(s)	168
BstFNI	CGCG	1 cut(s)	66
BstHHI	GCGC	1 cut(s)	68
BstKTI	GATC	1 cut(s)	85
BstMAI	GTCTC	1 cut(s)	350
BstMBI	GATC	1 cut(s)	82
BstMCI	CGRYCG	1 cut(s)	186
BstMWI	GCNNNNNNNGC	2 cut(s)	257, 338
BstUI	CGCG	1 cut(s)	66
BstV1I	GCAGC	1 cut(s)	325
BstX2I	RGATCY	1 cut(s)	82
BstXI	CCANNNNNNTGG	2 cut(s)	35, 175
BstYI	RGATCY	1 cut(s)	82
BtgI	CCRYGG	1 cut(s)	168
BtsIMutI	CAGTG	2 cut(s)	217, 314
CaiI	CAGNNNCTG	1 cut(s)	338
CfoI	GCGC	1 cut(s)	68
Cfr13I	GGNCC	1 cut(s)	385
CseI	GACGC	1 cut(s)	203
Csp6I	GTAC	1 cut(s)	281
CviAII	CATG	2 cut(s)	169, 389
CviJI	RGCY	6 cut(s)	27, 60, 208, 251, 338, 362
CviKI_1	RGCY	6 cut(s)	27, 60, 208, 251, 338, 362
CviQI	GTAC	1 cut(s)	281
DdeI	CTNAG	3 cut(s)	306, 363, 399
DpnI	GATC	1 cut(s)	84
DpnII	GATC	1 cut(s)	82
DraIII	CACNNNGTG	1 cut(s)	309
Eam1104I	CTCTTC	1 cut(s)	92
EarI	CTCTTC	1 cut(s)	92
Ecl136II	GAGCTC	1 cut(s)	60
Eco130I	CCWWGG	2 cut(s)	168, 198
Eco24I	GRGCYC	2 cut(s)	62, 210
Eco47I	GGWCC	1 cut(s)	385
Eco53kI	GAGCTC	1 cut(s)	60
EcoICRI	GAGCTC	1 cut(s)	60
EcoT14I	CCWWGG	2 cut(s)	168, 198
EcoT38I	GRGCYC	2 cut(s)	62, 210
ErhI	CCWWGG	2 cut(s)	168, 198
FaeI	CATG	2 cut(s)	172, 392
FaiI	YATR	6 cut(s)	119, 137, 144, 170, 350, 390
FaqI	GGGAC	1 cut(s)	398
FatI	CATG	2 cut(s)	168, 388
FauI	CCCGC	2 cut(s)	71, 334
FblI	GTMKAC	1 cut(s)	192
Fnu4HI	GCNGC	1 cut(s)	339
FriOI	GRGCYC	2 cut(s)	62, 210
Fsp4HI	GCNGC	1 cut(s)	339
GlaI	GCGC	1 cut(s)	67
GluI	GCNGC	1 cut(s)	339
HgaI	GACGC	1 cut(s)	203
HhaI	GCGC	1 cut(s)	68
Hin1I	GRCGYC	1 cut(s)	195
Hin1II	CATG	2 cut(s)	172, 392
Hin6I	GCGC	1 cut(s)	66
HinP1I	GCGC	1 cut(s)	66
HinfI	GANTC	3 cut(s)	32, 53, 179
Hpy166II	GTNNAC	2 cut(s)	150, 193
Hpy188I	TCNGA	5 cut(s)	43, 52, 82, 105, 315
Hpy8I	GTNNAC	2 cut(s)	150, 193
HpyCH4III	ACNGT	2 cut(s)	328, 375
HpyCH4V	TGCA	3 cut(s)	239, 260, 332
HpyF10VI	GCNNNNNNNGC	2 cut(s)	257, 338
HpyF3I	CTNAG	3 cut(s)	306, 363, 399
Hsp92I	GRCGYC	1 cut(s)	195
Hsp92II	CATG	2 cut(s)	172, 392
HspAI	GCGC	1 cut(s)	66
Kzo9I	GATC	1 cut(s)	82
LmnI	GCTCC	2 cut(s)	53, 65
LpnPI	CCDG	3 cut(s)	21, 223, 367
Lsp1109I	GCAGC	1 cut(s)	325
LweI	GCATC	1 cut(s)	236
MaeIII	GTNAC	2 cut(s)	212, 322
MalI	GATC	1 cut(s)	84
MboI	GATC	1 cut(s)	82
MboII	GAAGA	5 cut(s)	79, 137, 140, 166, 169
MfeI	CAATTG	1 cut(s)	72
MflI	RGATCY	1 cut(s)	82
MhlI	GDGCHC	2 cut(s)	62, 210
MluCI	AATT	2 cut(s)	72, 218
MnlI	CCTC	3 cut(s)	79, 85, 358
MslI	CAYNNNNRTG	1 cut(s)	173
MspA1I	CMGCKG	2 cut(s)	251, 362
MunI	CAATTG	1 cut(s)	72
MvnI	CGCG	1 cut(s)	66
MwoI	GCNNNNNNNGC	2 cut(s)	257, 338
NcoI	CCATGG	1 cut(s)	168
NdeII	GATC	1 cut(s)	82
NlaIII	CATG	2 cut(s)	172, 392
NlaIV	GGNNCC	1 cut(s)	386
NmuCI	GTSAC	1 cut(s)	212
PfeI	GAWTC	3 cut(s)	32, 53, 179
PkrI	GCNGC	1 cut(s)	340
Psp124BI	GAGCTC	1 cut(s)	62
PspN4I	GGNNCC	1 cut(s)	386
PspPI	GGNCC	1 cut(s)	385
PstNI	CAGNNNCTG	1 cut(s)	338
PsuI	RGATCY	1 cut(s)	82
PvuII	CAGCTG	2 cut(s)	251, 362
RsaI	GTAC	1 cut(s)	282
RsaNI	GTAC	1 cut(s)	281
RseI	CAYNNNNRTG	1 cut(s)	173
SacI	GAGCTC	1 cut(s)	62
SatI	GCNGC	1 cut(s)	339
Sau3AI	GATC	1 cut(s)	82
Sau96I	GGNCC	1 cut(s)	385
ScaI	AGTACT	1 cut(s)	282
SduI	GDGCHC	2 cut(s)	62, 210
SetI	ASST	6 cut(s)	62, 96, 253, 340, 364, 369
SfaNI	GCATC	1 cut(s)	236
SinI	GGWCC	1 cut(s)	385
SmiMI	CAYNNNNRTG	1 cut(s)	173
Sse9I	AATT	2 cut(s)	72, 218
SsiI	CCGC	2 cut(s)	64, 341
SstI	GAGCTC	1 cut(s)	62
StyI	CCWWGG	2 cut(s)	168, 198
TaaI	ACNGT	2 cut(s)	328, 375
TaqI	TCGA	3 cut(s)	56, 90, 182
TaqII	GACCGA	1 cut(s)	200
TasI	AATT	2 cut(s)	72, 218
TatI	WGTACW	1 cut(s)	280
TfiI	GAWTC	3 cut(s)	32, 53, 179
TscAI	CASTG	2 cut(s)	217, 314
TseFI	GTSAC	1 cut(s)	212
TseI	GCWGC	1 cut(s)	338
Tsp45I	GTSAC	1 cut(s)	212
TspDTI	ATGAA	2 cut(s)	288, 367
TspGWI	ACGGA	1 cut(s)	33
TspRI	CASTG	2 cut(s)	217, 314
VpaK11BI	GGWCC	1 cut(s)	385
XmiI	GTMKAC	1 cut(s)	192
ZrmI	AGTACT	1 cut(s)	282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.