Rroxscaffold_5G00371440

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Reverse (-)
53008167 .. 53009524
1358 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_5G00371440.1

Sequence Viewer

Length: 195 bp
ATGATTGTTGGTGGTGATGAAAATAGCCACAATTTCGGGTCGAATTGCTCTGAATCTAGCTCCTTCGCCTCAGTTGTTTCAGATCTGTTCGAGGTTTTCAGTTGGATGAGATTGCTTAGGTTAAAAGAAGATGATATGGAGTATGAGTTTATGAAGAAGAAATTCACTGGAATTGGGCTAGTCAAGGCTTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

64

Amino Acids

7.29

Weight (kDa)

4.91

Isoelectric Point (pI)

24.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0020586)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 161
AluBI AGCT 1 cut(s) 60
AluI AGCT 1 cut(s) 60
ApoI RAATTY 1 cut(s) 161
Asp700I GAANNNNTTC 1 cut(s) 161
AsuHPI GGTGA 1 cut(s) 26
BfaI CTAG 2 cut(s) 57, 179
BglII AGATCT 1 cut(s) 82
Bpu10I CCTNAGC 1 cut(s) 116
BsaXI ACNNNNNCTCC 2 cut(s) 131, 161
Bse1I ACTGG 1 cut(s) 172
BseGI GGATG 1 cut(s) 111
BseMII CTCAG 1 cut(s) 84
BseNI ACTGG 1 cut(s) 172
Bsp143I GATC 1 cut(s) 82
BspCNI CTCAG 1 cut(s) 83
BsrI ACTGG 1 cut(s) 172
BssMI GATC 1 cut(s) 82
BstDEI CTNAG 2 cut(s) 70, 116
BstF5I GGATG 1 cut(s) 111
BstKTI GATC 1 cut(s) 85
BstMBI GATC 1 cut(s) 82
BstX2I RGATCY 1 cut(s) 82
BstYI RGATCY 1 cut(s) 82
BtsCI GGATG 1 cut(s) 111
BtsIMutI CAGTG 1 cut(s) 165
CviJI RGCY 4 cut(s) 27, 60, 178, 188
CviKI_1 RGCY 4 cut(s) 27, 60, 178, 188
DdeI CTNAG 2 cut(s) 70, 116
DpnI GATC 1 cut(s) 84
DpnII GATC 1 cut(s) 82
FaiI YATR 3 cut(s) 137, 144, 152
FokI GGATG 1 cut(s) 118
FspBI CTAG 2 cut(s) 57, 179
HinfI GANTC 1 cut(s) 53
HphI GGTGA 1 cut(s) 26
Hpy188I TCNGA 2 cut(s) 52, 82
HpyAV CCTTC 1 cut(s) 73
HpyF3I CTNAG 2 cut(s) 70, 116
Kzo9I GATC 1 cut(s) 82
LmnI GCTCC 1 cut(s) 65
LpnPI CCDG 1 cut(s) 153
MaeI CTAG 2 cut(s) 57, 179
MalI GATC 1 cut(s) 84
MboI GATC 1 cut(s) 82
MboII GAAGA 3 cut(s) 140, 166, 169
MflI RGATCY 1 cut(s) 82
MluCI AATT 4 cut(s) 31, 43, 161, 171
MmeI TCCRAC 1 cut(s) 83
MnlI CCTC 2 cut(s) 79, 85
MroXI GAANNNNTTC 1 cut(s) 161
MseI TTAA 1 cut(s) 122
NdeII GATC 1 cut(s) 82
PdmI GAANNNNTTC 1 cut(s) 161
PfeI GAWTC 1 cut(s) 53
PsuI RGATCY 1 cut(s) 82
SaqAI TTAA 1 cut(s) 122
Sau3AI GATC 1 cut(s) 82
SetI ASST 3 cut(s) 62, 96, 122
SgeI CNNG 5 cut(s) 49, 69, 103, 180, 191
Sse9I AATT 4 cut(s) 31, 43, 161, 171
SspMI CTAG 2 cut(s) 57, 179
TaqI TCGA 2 cut(s) 41, 90
TasI AATT 4 cut(s) 31, 43, 161, 171
TfiI GAWTC 1 cut(s) 53
Tru1I TTAA 1 cut(s) 122
Tru9I TTAA 1 cut(s) 122
TscAI CASTG 1 cut(s) 172
TspDTI ATGAA 2 cut(s) 33, 167
TspRI CASTG 1 cut(s) 172
XapI RAATTY 1 cut(s) 161
XmnI GAANNNNTTC 1 cut(s) 161
XspI CTAG 2 cut(s) 57, 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.