Rroxscaffold_7G00195990

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0020586
Physical Location & Seq
Forward (+)
38645327 .. 38646294
968 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00195990.1

Sequence Viewer

Length: 354 bp
ATGAATACGAACGGTTCTGTTCGAGATTCGGAACCGTTTGTATTCATTGTTATTCTAGATGGCATAGATCGAACAAATAAGCAGTACCTTGCCTCTATGATTGTTGATGATGACGAAAATAGCCACGATGATTCTAGATTCCAGGTTGGATTGCTCTTAATCGAGCTCCTCCGCCTTTGTTGTTTCGGATATGTTCGAGGTTTCAATTGGATGAGATTTCTTAGGTTAGAAGAAAATGATATGGAGTATGAGTATATGAAGAAGAAGTTCGCCGTGGGTATGGAATCGGCCGGAGTAGACGCCAACGGAGAGCCCGGGTCTCATGGTGTTGCATGTAGTTCAATTGCTTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

117

Amino Acids

13.21

Weight (kDa)

4.59

Isoelectric Point (pI)

34.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0020586)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0248971
rosa_laevigata RLG00000002300 RLG00000006534
rosa_multiflora Rmu_sc0008653.1_g000001
rosa_roxburghii Rroxscaffold_5G00371440 Rroxscaffold_7G00195990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 297
AciI CCGC 1 cut(s) 172
AcoI YGGCCR 1 cut(s) 288
AcyI GRCGYC 1 cut(s) 300
AfaI GTAC 1 cut(s) 86
AgsI TTSAA 2 cut(s) 205, 342
AjnI CCWGG 1 cut(s) 141
AluBI AGCT 1 cut(s) 166
AluI AGCT 1 cut(s) 166
Alw21I GWGCWC 1 cut(s) 168
Alw26I GTCTC 1 cut(s) 324
Ama87I CYCGRG 1 cut(s) 314
AoxI GGCC 1 cut(s) 288
Asp700I GAANNNNTTC 1 cut(s) 266
AsuC2I CCSGG 2 cut(s) 315, 316
AvaI CYCGRG 1 cut(s) 314
BanII GRGCYC 2 cut(s) 168, 315
Bbv12I GWGCWC 1 cut(s) 168
BccI CCATC 1 cut(s) 53
BceAI ACGGC 1 cut(s) 257
BciT130I CCWGG 1 cut(s) 143
BcnI CCSGG 2 cut(s) 315, 316
BcoDI GTCTC 1 cut(s) 324
BfaI CTAG 2 cut(s) 56, 135
Bme1390I CCNGG 3 cut(s) 143, 315, 316
BmeT110I CYCGRG 1 cut(s) 314
BmiI GGNNCC 1 cut(s) 33
BmrFI CCNGG 3 cut(s) 143, 315, 316
BpuMI CCSGG 2 cut(s) 315, 316
BsaHI GRCGYC 1 cut(s) 300
BsaI GGTCTC 1 cut(s) 324
BsaJI CCNNGG 2 cut(s) 273, 314
BsaXI ACNNNNNCTCC 2 cut(s) 236, 266
BseBI CCWGG 1 cut(s) 143
BseDI CCNNGG 2 cut(s) 273, 314
BseGI GGATG 1 cut(s) 216
BseRI GAGGAG 1 cut(s) 158
BseX3I CGGCCG 1 cut(s) 288
Bsh1285I CGRYCG 1 cut(s) 291
BshFI GGCC 1 cut(s) 290
BsiEI CGRYCG 1 cut(s) 291
BsiHKAI GWGCWC 1 cut(s) 168
BsiHKCI CYCGRG 1 cut(s) 314
BsiSI CCGG 2 cut(s) 291, 315
BsmAI GTCTC 1 cut(s) 324
BsnI GGCC 1 cut(s) 290
Bso31I GGTCTC 1 cut(s) 324
BsoBI CYCGRG 1 cut(s) 314
Bsp1286I GDGCHC 2 cut(s) 168, 315
Bsp143I GATC 1 cut(s) 67
BspACI CCGC 1 cut(s) 172
BspANI GGCC 1 cut(s) 290
BspLI GGNNCC 1 cut(s) 33
BspTNI GGTCTC 1 cut(s) 324
BssECI CCNNGG 2 cut(s) 273, 314
BssMI GATC 1 cut(s) 67
BssNI GRCGYC 1 cut(s) 300
Bst2UI CCWGG 1 cut(s) 143
Bst4CI ACNGT 2 cut(s) 14, 36
BstACI GRCGYC 1 cut(s) 300
BstC8I GCNNGC 1 cut(s) 349
BstDEI CTNAG 1 cut(s) 221
BstDSI CCRYGG 1 cut(s) 273
BstF5I GGATG 1 cut(s) 216
BstKTI GATC 1 cut(s) 70
BstMAI GTCTC 1 cut(s) 324
BstMBI GATC 1 cut(s) 67
BstMCI CGRYCG 1 cut(s) 291
BstNI CCWGG 1 cut(s) 143
BstNSI RCATGY 1 cut(s) 336
BstSCI CCNGG 3 cut(s) 141, 313, 314
BstZI CGGCCG 1 cut(s) 288
BsuRI GGCC 1 cut(s) 290
BtgI CCRYGG 1 cut(s) 273
BtsCI GGATG 1 cut(s) 216
Cac8I GCNNGC 1 cut(s) 349
Cfr9I CCCGGG 1 cut(s) 314
CseI GACGC 1 cut(s) 308
Csp6I GTAC 1 cut(s) 85
CviAII CATG 2 cut(s) 323, 333
CviJI RGCY 4 cut(s) 123, 166, 290, 313
CviKI_1 RGCY 4 cut(s) 123, 166, 290, 313
CviQI GTAC 1 cut(s) 85
DdeI CTNAG 1 cut(s) 221
DpnI GATC 1 cut(s) 69
DpnII GATC 1 cut(s) 67
EaeI YGGCCR 1 cut(s) 288
EagI CGGCCG 1 cut(s) 288
EciI GGCGGA 1 cut(s) 161
Ecl136II GAGCTC 1 cut(s) 166
EclXI CGGCCG 1 cut(s) 288
Eco24I GRGCYC 2 cut(s) 168, 315
Eco31I GGTCTC 1 cut(s) 324
Eco52I CGGCCG 1 cut(s) 288
Eco53kI GAGCTC 1 cut(s) 166
Eco88I CYCGRG 1 cut(s) 314
EcoICRI GAGCTC 1 cut(s) 166
EcoRII CCWGG 1 cut(s) 141
EcoT38I GRGCYC 2 cut(s) 168, 315
FaeI CATG 2 cut(s) 326, 336
FatI CATG 2 cut(s) 322, 332
FblI GTMKAC 1 cut(s) 297
FokI GGATG 1 cut(s) 223
FriOI GRGCYC 2 cut(s) 168, 315
FspBI CTAG 2 cut(s) 56, 135
HaeIII GGCC 1 cut(s) 290
HapII CCGG 2 cut(s) 291, 315
HgaI GACGC 1 cut(s) 308
Hin1I GRCGYC 1 cut(s) 300
Hin1II CATG 2 cut(s) 326, 336
HinfI GANTC 4 cut(s) 26, 131, 138, 284
HpaII CCGG 2 cut(s) 291, 315
Hpy166II GTNNAC 1 cut(s) 298
Hpy188I TCNGA 2 cut(s) 31, 188
Hpy188III TCNNGA 3 cut(s) 23, 56, 135
Hpy8I GTNNAC 1 cut(s) 298
HpyCH4III ACNGT 2 cut(s) 14, 36
HpyCH4V TGCA 1 cut(s) 332
HpyF3I CTNAG 1 cut(s) 221
Hsp92I GRCGYC 1 cut(s) 300
Hsp92II CATG 2 cut(s) 326, 336
Kzo9I GATC 1 cut(s) 67
LmnI GCTCC 1 cut(s) 171
LpnPI CCDG 4 cut(s) 128, 155, 304, 328
MaeI CTAG 2 cut(s) 56, 135
MalI GATC 1 cut(s) 69
MboI GATC 1 cut(s) 67
MboII GAAGA 3 cut(s) 242, 271, 274
MfeI CAATTG 2 cut(s) 205, 342
MhlI GDGCHC 2 cut(s) 168, 315
MluCI AATT 2 cut(s) 205, 342
MmeI TCCRAC 1 cut(s) 127
MnlI CCTC 3 cut(s) 103, 179, 191
MroXI GAANNNNTTC 1 cut(s) 266
MseI TTAA 1 cut(s) 158
MspI CCGG 2 cut(s) 291, 315
MspR9I CCNGG 3 cut(s) 143, 315, 316
MunI CAATTG 2 cut(s) 205, 342
MvaI CCWGG 1 cut(s) 143
NciI CCSGG 2 cut(s) 315, 316
NdeII GATC 1 cut(s) 67
NlaIII CATG 2 cut(s) 326, 336
NlaIV GGNNCC 1 cut(s) 33
NspI RCATGY 1 cut(s) 336
PdmI GAANNNNTTC 1 cut(s) 266
PfeI GAWTC 4 cut(s) 26, 131, 138, 284
Psp124BI GAGCTC 1 cut(s) 168
Psp6I CCWGG 1 cut(s) 141
PspGI CCWGG 1 cut(s) 141
PspN4I GGNNCC 1 cut(s) 33
RsaI GTAC 1 cut(s) 86
RsaNI GTAC 1 cut(s) 85
SacI GAGCTC 1 cut(s) 168
SaqAI TTAA 1 cut(s) 158
Sau3AI GATC 1 cut(s) 67
ScrFI CCNGG 3 cut(s) 143, 315, 316
SduI GDGCHC 2 cut(s) 168, 315
SetI ASST 5 cut(s) 90, 147, 168, 202, 227
SmaI CCCGGG 1 cut(s) 316
Sse9I AATT 2 cut(s) 205, 342
SsiI CCGC 1 cut(s) 172
SspMI CTAG 2 cut(s) 56, 135
SstI GAGCTC 1 cut(s) 168
StyD4I CCNGG 3 cut(s) 141, 313, 314
TaaI ACNGT 2 cut(s) 14, 36
TaqI TCGA 4 cut(s) 22, 70, 162, 196
TasI AATT 2 cut(s) 205, 342
TfiI GAWTC 4 cut(s) 26, 131, 138, 284
Tru1I TTAA 1 cut(s) 158
Tru9I TTAA 1 cut(s) 158
TspDTI ATGAA 3 cut(s) 17, 34, 272
TspGWI ACGGA 1 cut(s) 321
TspMI CCCGGG 1 cut(s) 314
XbaI TCTAGA 2 cut(s) 55, 134
XceI RCATGY 1 cut(s) 336
XmaI CCCGGG 1 cut(s) 314
XmiI GTMKAC 1 cut(s) 297
XmnI GAANNNNTTC 1 cut(s) 266
XspI CTAG 2 cut(s) 56, 135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.