Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008653.1

Orthogroup ID

OG0020586

Physical Location & Seq

Genomic Coordinates Reverse (-)

325 .. 1112

Gene Structure 788 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008653.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

atgaaaaattcttgctactttaattgcaacaggtacctgtacgatcttttgaccaaggcaagtgtggtgaagaagaaaattcccattcttattctttgcaacaagacagacaaagtaacagcacatagcaaggagttcattcgaaaacaattggagaaggaaattgacaaattacgggcatcaagaagtgcaatatcgacagctgatattgcaaatgactgtactcttggggtacttggtgaaccattttcattcactcagtgtcggaacaaagttacagtcgcagaagctgcgggtattataggcgagatagctgaggtggaacagttcatcagggaccatgtaaagtcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005047 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005785 GO:0005789 GO:0005791 GO:0012505 GO:0016020 GO:0030867 GO:0031090 GO:0031984 GO:0032991 GO:0042175 GO:0043021 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0098588 GO:0098796 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

SRPRB

Protein Analysis

117

Amino Acids

13.15

Weight (kDa)

9.01

Isoelectric Point (pI)

30.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020586)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0248971
rosa_laevigata	RLG00000002300 RLG00000006534
rosa_multiflora	Rmu_sc0008653.1_g000001
rosa_roxburghii	Rroxscaffold_5G00371440 Rroxscaffold_7G00195990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	33
AccB1I	GGYRCC	1 cut(s)	33
AciI	CCGC	1 cut(s)	293
AcsI	RAATTY	2 cut(s)	7, 78
AdeI	CACNNNGTG	1 cut(s)	261
AfaI	GTAC	4 cut(s)	35, 41, 223, 234
AluBI	AGCT	3 cut(s)	203, 290, 314
AluI	AGCT	3 cut(s)	203, 290, 314
AlwNI	CAGNNNCTG	1 cut(s)	290
ApeKI	GCWGC	1 cut(s)	290
ApoI	RAATTY	2 cut(s)	7, 78
ArsI	GACNNNNNNTTYG	2 cut(s)	264, 296
Asp718I	GGTACC	1 cut(s)	33
AspS9I	GGNCC	1 cut(s)	337
AsuHPI	GGTGA	2 cut(s)	79, 251
AsuII	TTCGAA	1 cut(s)	142
AvaII	GGWCC	1 cut(s)	337
BanI	GGYRCC	1 cut(s)	33
BbvCI	CCTCAGC	1 cut(s)	315
BbvI	GCAGC	1 cut(s)	277
BisI	GCNGC	1 cut(s)	291
BlsI	GCNGC	1 cut(s)	292
Bme18I	GGWCC	1 cut(s)	337
BmgT120I	GGNCC	1 cut(s)	337
BmiI	GGNNCC	2 cut(s)	35, 338
BmsI	GCATC	1 cut(s)	188
Bpu10I	CCTNAGC	1 cut(s)	315
Bpu14I	TTCGAA	1 cut(s)	142
BsaJI	CCNNGG	1 cut(s)	54
BseDI	CCNNGG	1 cut(s)	54
BseMII	CTCAG	2 cut(s)	272, 306
BseXI	GCAGC	1 cut(s)	277
BshNI	GGYRCC	1 cut(s)	33
BslFI	GGGAC	1 cut(s)	350
BsmFI	GGGAC	1 cut(s)	350
Bsp119I	TTCGAA	1 cut(s)	142
Bsp143I	GATC	1 cut(s)	43
BspACI	CCGC	1 cut(s)	293
BspCNI	CTCAG	2 cut(s)	271, 307
BspLI	GGNNCC	2 cut(s)	35, 338
BspT104I	TTCGAA	1 cut(s)	142
BspT107I	GGYRCC	1 cut(s)	33
BssECI	CCNNGG	1 cut(s)	54
BssMI	GATC	1 cut(s)	43
BssT1I	CCWWGG	1 cut(s)	54
Bst4CI	ACNGT	3 cut(s)	221, 280, 327
BstAPI	GCANNNNNTGC	1 cut(s)	290
BstBI	TTCGAA	1 cut(s)	142
BstDEI	CTNAG	3 cut(s)	258, 315, 351
BstKTI	GATC	1 cut(s)	46
BstMBI	GATC	1 cut(s)	43
BstMWI	GCNNNNNNNGC	2 cut(s)	209, 290
BstV1I	GCAGC	1 cut(s)	277
BtsIMutI	CAGTG	1 cut(s)	266
CaiI	CAGNNNCTG	1 cut(s)	290
Cfr13I	GGNCC	1 cut(s)	337
Csp6I	GTAC	4 cut(s)	34, 40, 222, 233
CviAII	CATG	1 cut(s)	341
CviJI	RGCY	3 cut(s)	203, 290, 314
CviKI_1	RGCY	3 cut(s)	203, 290, 314
CviQI	GTAC	4 cut(s)	34, 40, 222, 233
DdeI	CTNAG	3 cut(s)	258, 315, 351
DpnI	GATC	1 cut(s)	45
DpnII	GATC	1 cut(s)	43
DraIII	CACNNNGTG	1 cut(s)	261
Eco130I	CCWWGG	1 cut(s)	54
Eco47I	GGWCC	1 cut(s)	337
EcoT14I	CCWWGG	1 cut(s)	54
ErhI	CCWWGG	1 cut(s)	54
FaeI	CATG	1 cut(s)	344
FaiI	YATR	3 cut(s)	126, 302, 342
FaqI	GGGAC	1 cut(s)	350
FatI	CATG	1 cut(s)	340
FauI	CCCGC	1 cut(s)	286
Fnu4HI	GCNGC	1 cut(s)	291
Fsp4HI	GCNGC	1 cut(s)	291
GluI	GCNGC	1 cut(s)	291
Hin1II	CATG	1 cut(s)	344
HphI	GGTGA	2 cut(s)	79, 251
Hpy166II	GTNNAC	1 cut(s)	242
Hpy188I	TCNGA	1 cut(s)	267
Hpy188III	TCNNGA	1 cut(s)	183
Hpy8I	GTNNAC	1 cut(s)	242
HpyAV	CCTTC	1 cut(s)	151
HpyCH4III	ACNGT	3 cut(s)	221, 280, 327
HpyCH4V	TGCA	4 cut(s)	27, 99, 191, 212
HpyF10VI	GCNNNNNNNGC	2 cut(s)	209, 290
HpyF3I	CTNAG	3 cut(s)	258, 315, 351
Hsp92II	CATG	1 cut(s)	344
KpnI	GGTACC	1 cut(s)	37
Kzo9I	GATC	1 cut(s)	43
LpnPI	CCDG	3 cut(s)	16, 50, 319
Lsp1109I	GCAGC	1 cut(s)	277
LweI	GCATC	1 cut(s)	188
MaeIII	GTNAC	2 cut(s)	115, 274
MalI	GATC	1 cut(s)	45
MboI	GATC	1 cut(s)	43
MboII	GAAGA	2 cut(s)	82, 85
MfeI	CAATTG	1 cut(s)	149
MluCI	AATT	6 cut(s)	7, 22, 78, 149, 162, 170
MmeI	TCCRAC	1 cut(s)	245
MnlI	CCTC	1 cut(s)	310
MseI	TTAA	1 cut(s)	21
MspA1I	CMGCKG	1 cut(s)	203
MunI	CAATTG	1 cut(s)	149
MwoI	GCNNNNNNNGC	2 cut(s)	209, 290
NdeII	GATC	1 cut(s)	43
NlaIII	CATG	1 cut(s)	344
NlaIV	GGNNCC	2 cut(s)	35, 338
NspV	TTCGAA	1 cut(s)	142
PkrI	GCNGC	1 cut(s)	292
PspN4I	GGNNCC	2 cut(s)	35, 338
PspPI	GGNCC	1 cut(s)	337
PstNI	CAGNNNCTG	1 cut(s)	290
PvuII	CAGCTG	1 cut(s)	203
RsaI	GTAC	4 cut(s)	35, 41, 223, 234
RsaNI	GTAC	4 cut(s)	34, 40, 222, 233
SaqAI	TTAA	1 cut(s)	21
SatI	GCNGC	1 cut(s)	291
Sau3AI	GATC	1 cut(s)	43
Sau96I	GGNCC	1 cut(s)	337
SetI	ASST	6 cut(s)	35, 39, 205, 292, 316, 321
SfaNI	GCATC	1 cut(s)	188
SfuI	TTCGAA	1 cut(s)	142
SinI	GGWCC	1 cut(s)	337
Sse9I	AATT	6 cut(s)	7, 22, 78, 149, 162, 170
SsiI	CCGC	1 cut(s)	293
StyI	CCWWGG	1 cut(s)	54
TaaI	ACNGT	3 cut(s)	221, 280, 327
TaqI	TCGA	2 cut(s)	142, 197
TasI	AATT	6 cut(s)	7, 22, 78, 149, 162, 170
TatI	WGTACW	1 cut(s)	221
Tru1I	TTAA	1 cut(s)	21
Tru9I	TTAA	1 cut(s)	21
TscAI	CASTG	1 cut(s)	266
TseI	GCWGC	1 cut(s)	290
TspDTI	ATGAA	4 cut(s)	17, 127, 240, 319
TspRI	CASTG	1 cut(s)	266
VpaK11BI	GGWCC	1 cut(s)	337
XapI	RAATTY	2 cut(s)	7, 78
XcmI	CCANNNNNNNNNTGG	1 cut(s)	61

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.