RchiOBHm_Chr6g0258461

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0017980
Physical Location & Seq
Reverse (-)
13739923 .. 13741107
1185 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 933 bp
ATGAAAATGGAACCCCCACCCCCACCGATCATCACTGATGATGTAGCCCATCAATTCTTCCCCTTCTTCAAAGTTTACAAAGATGGTCGTGTAGAGAGGTTCATGCCTTCTGAGAAACACCCTCCCTGTGATGACCCGAACTCCAGTGTCCGGTCCAAAGATGTCGTCATCTCCTCCGAACCGGTTGTCTCGGCCAGGGTTTTCATGCCCCGAATACCCAACAACCCGGAAAAGAAGCTCCCTCTCGTGGTTTACATTCACGGCGGCGGGTTCTCAATAGCCTCCGCTTTCCACTCGGGTTACCACAAATACGTGTCCTCCCTTGTCGTCGAAGCCAACGTCATCGCCGTCTCCGTCGACTACCGGCTTGCCCCGGAGCACCCAATACCCGCATGCTACGACGACTCGTGGGCGGTGCTCAAATGGGTGGCTTCCCATGCAAATAGGGATGGCCCTGATCCATGGCTGAACAGCCATGCAGATTTGGGTAGGGTCTTTTTGGCGGGTGACAGTGCGGGGGCGAATATTTCCCACAACATGATATCTCGGGTCGGATCAACTGGGTTACCCGGAGTGAAGATAGTAGGAGTGGCTTTGGTGCATCCTTACTTTGGTGGTACGGAAGATGATAAAATGTGGCTGTACATGTGTCCGGAGAATGGCGGGTTGGATGATCCGAGGCTGAAACCGGCCGTAGAGGATCTGAGAAAGCTAGAGTGTGAGAGGGTTTTGGTGTTTGTGGCCGGGAAAGACCATTTGAGGGAGAGAGGGACTTGTTATGTTGAGGCTTTGAAGGGAAGTGGGTGGAAAGGGACGGTGGAGATTGTAGAGCATGAGGAGGAGAGGCATGTCTTCCATCTGATGAAGCCTGAATCTGAGAAAGCTGTGGATTTGATGAATAGGTTGGTCTCCTTCATCGATCAAGCAGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_3

Protein Analysis

310

Amino Acids

34.43

Weight (kDa)

5.96

Isoelectric Point (pI)

40.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COesterase PF00135 65 - 176 1.3e-08 Carboxylesterase family
BD-FAE PF20434 72 - 177 4.9e-13 BD-FAE
Abhydrolase_3 PF07859 83 - 286 8.2e-46 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017980)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g06540
rosa_chinensis RchiOBHm_Chr6g0258461
rosa_laevigata RLG00000014610 RLG00000014611
rosa_multiflora Rmu_sc0008229.1_g000008 Rmu_sc0008229.1_g000010
rosa_roxburghii Rroxscaffold_178G00437460 Rroxscaffold_7G00205710
rosa_rugosa Rorug05G0581800
rosa_samantha Rh6CG086700
rosa_wichuraiana Rw6G008510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 357
AccIII TCCGGA 1 cut(s) 652
AciI CCGC 8 cut(s) 264, 267, 285, 390, 413, 503, 515, 663
AclWI GGATC 4 cut(s) 452, 562, 668, 708
AcoI YGGCCR 3 cut(s) 192, 690, 741
AfaI GTAC 2 cut(s) 619, 644
AfiI CCNNNNNNNGG 5 cut(s) 150, 247, 611, 659, 760
AflIII ACRYGT 2 cut(s) 312, 645
AgeI ACCGGT 1 cut(s) 181
AgsI TTSAA 2 cut(s) 70, 793
AjnI CCWGG 1 cut(s) 194
AjuI GAANNNNNNNTTGG 2 cut(s) 650, 682
AluBI AGCT 3 cut(s) 238, 712, 884
AluI AGCT 3 cut(s) 238, 712, 884
Alw21I GWGCWC 2 cut(s) 381, 420
Alw26I GTCTC 3 cut(s) 193, 355, 913
AlwI GGATC 4 cut(s) 452, 562, 668, 708
Ama87I CYCGRG 2 cut(s) 295, 546
Aor13HI TCCGGA 1 cut(s) 652
AoxI GGCC 4 cut(s) 192, 451, 690, 741
ArsI GACNNNNNNTTYG 6 cut(s) 150, 171, 182, 203, 324, 356
AsiGI ACCGGT 1 cut(s) 181
AspS9I GGNCC 2 cut(s) 153, 452
AsuC2I CCSGG 4 cut(s) 227, 374, 570, 745
AsuHPI GGTGA 1 cut(s) 518
AvaI CYCGRG 2 cut(s) 295, 546
AvaII GGWCC 1 cut(s) 153
BauI CACGAG 2 cut(s) 245, 406
BbsI GAAGAC 1 cut(s) 844
Bbv12I GWGCWC 2 cut(s) 381, 420
BccI CCATC 4 cut(s) 57, 77, 443, 864
BceAI ACGGC 3 cut(s) 277, 332, 677
BciT130I CCWGG 1 cut(s) 196
BcnI CCSGG 4 cut(s) 227, 374, 570, 745
BcoDI GTCTC 3 cut(s) 193, 355, 913
BfaI CTAG 1 cut(s) 713
BisI GCNGC 1 cut(s) 265
BlsI GCNGC 1 cut(s) 266
Bme1390I CCNGG 5 cut(s) 196, 227, 374, 570, 745
Bme18I GGWCC 1 cut(s) 153
BmeT110I CYCGRG 2 cut(s) 295, 546
BmgT120I GGNCC 2 cut(s) 153, 452
BmiI GGNNCC 1 cut(s) 12
BmrFI CCNGG 5 cut(s) 196, 227, 374, 570, 745
BmrI ACTGGG 1 cut(s) 570
BmsI GCATC 1 cut(s) 610
BmuI ACTGGG 1 cut(s) 570
BpiI GAAGAC 1 cut(s) 844
BpmI CTGGAG 1 cut(s) 127
BpuMI CCSGG 4 cut(s) 227, 374, 570, 745
Bsa29I ATCGAT 1 cut(s) 918
BsaAI YACGTR 1 cut(s) 313
BsaI GGTCTC 1 cut(s) 913
BsaJI CCNNGG 4 cut(s) 195, 372, 461, 677
BsaWI WCCGGW 3 cut(s) 150, 181, 652
BsaXI ACNNNNNCTCC 4 cut(s) 125, 155, 302, 332
Bsc4I CCNNNNNNNGG 5 cut(s) 150, 247, 611, 659, 760
Bse118I RCCGGY 3 cut(s) 181, 363, 688
Bse1I ACTGG 2 cut(s) 144, 565
BseAI TCCGGA 1 cut(s) 652
BseBI CCWGG 1 cut(s) 196
BseCI ATCGAT 1 cut(s) 918
BseDI CCNNGG 4 cut(s) 195, 372, 461, 677
BseGI GGATG 3 cut(s) 454, 601, 676
BseLI CCNNNNNNNGG 5 cut(s) 150, 247, 611, 659, 760
BseMII CTCAG 3 cut(s) 102, 695, 867
BseNI ACTGG 2 cut(s) 144, 565
BseRI GAGGAG 3 cut(s) 163, 851, 854
BseX3I CGGCCG 1 cut(s) 690
Bsh1285I CGRYCG 1 cut(s) 693
BshFI GGCC 4 cut(s) 194, 453, 692, 743
BshTI ACCGGT 1 cut(s) 181
BshVI ATCGAT 1 cut(s) 918
BsiEI CGRYCG 1 cut(s) 693
BsiHKAI GWGCWC 2 cut(s) 381, 420
BsiHKCI CYCGRG 2 cut(s) 295, 546
BsiSI CCGG 9 cut(s) 151, 182, 227, 364, 374, 570, 653, 689, 744
BslFI GGGAC 2 cut(s) 784, 826
BslI CCNNNNNNNGG 5 cut(s) 150, 247, 611, 659, 760
BsmAI GTCTC 3 cut(s) 193, 355, 913
BsmBI CGTCTC 1 cut(s) 355
BsmFI GGGAC 2 cut(s) 784, 826
BsnI GGCC 4 cut(s) 194, 453, 692, 743
Bso31I GGTCTC 1 cut(s) 913
BsoBI CYCGRG 2 cut(s) 295, 546
Bsp1286I GDGCHC 2 cut(s) 381, 420
Bsp13I TCCGGA 1 cut(s) 652
Bsp1407I TGTACA 1 cut(s) 642
Bsp143I GATC 6 cut(s) 27, 457, 554, 673, 700, 919
Bsp19I CCATGG 1 cut(s) 461
BspACI CCGC 8 cut(s) 264, 267, 285, 390, 413, 503, 515, 663
BspANI GGCC 4 cut(s) 194, 453, 692, 743
BspCNI CTCAG 3 cut(s) 103, 696, 868
BspDI ATCGAT 1 cut(s) 918
BspEI TCCGGA 1 cut(s) 652
BspLI GGNNCC 1 cut(s) 12
BspPI GGATC 4 cut(s) 452, 562, 668, 708
BspTNI GGTCTC 1 cut(s) 913
BsrFI RCCGGY 3 cut(s) 181, 363, 688
BsrGI TGTACA 1 cut(s) 642
BsrI ACTGG 2 cut(s) 144, 565
BssAI RCCGGY 3 cut(s) 181, 363, 688
BssECI CCNNGG 4 cut(s) 195, 372, 461, 677
BssMI GATC 6 cut(s) 27, 457, 554, 673, 700, 919
BssSI CACGAG 2 cut(s) 245, 406
BssT1I CCWWGG 1 cut(s) 461
Bst2BI CACGAG 2 cut(s) 245, 406
Bst2UI CCWGG 1 cut(s) 196
Bst4CI ACNGT 2 cut(s) 512, 817
BstAUI TGTACA 1 cut(s) 642
BstBAI YACGTR 1 cut(s) 313
BstC8I GCNNGC 2 cut(s) 369, 394
BstDEI CTNAG 3 cut(s) 111, 704, 876
BstDSI CCRYGG 1 cut(s) 461
BstEII GGTNACC 2 cut(s) 299, 564
BstF5I GGATG 3 cut(s) 454, 601, 676
BstKTI GATC 6 cut(s) 30, 460, 557, 676, 703, 922
BstMAI GTCTC 3 cut(s) 193, 355, 913
BstMBI GATC 6 cut(s) 27, 457, 554, 673, 700, 919
BstMCI CGRYCG 1 cut(s) 693
BstMWI GCNNNNNNNGC 1 cut(s) 437
BstNI CCWGG 1 cut(s) 196
BstNSI RCATGY 3 cut(s) 396, 649, 851
BstPI GGTNACC 2 cut(s) 299, 564
BstSCI CCNGG 5 cut(s) 194, 225, 372, 568, 743
BstV2I GAAGAC 1 cut(s) 844
BstX2I RGATCY 1 cut(s) 700
BstYI RGATCY 1 cut(s) 700
BstZI CGGCCG 1 cut(s) 690
Bsu15I ATCGAT 1 cut(s) 918
BsuRI GGCC 4 cut(s) 194, 453, 692, 743
BsuTUI ATCGAT 1 cut(s) 918
BtgI CCRYGG 1 cut(s) 461
BtgZI GCGATG 1 cut(s) 328
BtsCI GGATG 3 cut(s) 454, 601, 676
BtsIMutI CAGTG 3 cut(s) 33, 151, 517
Cac8I GCNNGC 2 cut(s) 369, 394
Cfr10I RCCGGY 3 cut(s) 181, 363, 688
Cfr13I GGNCC 2 cut(s) 153, 452
ClaI ATCGAT 1 cut(s) 918
Csp6I GTAC 2 cut(s) 618, 643
CspAI ACCGGT 1 cut(s) 181
CviQI GTAC 2 cut(s) 618, 643
DdeI CTNAG 3 cut(s) 111, 704, 876
DpnI GATC 6 cut(s) 29, 459, 556, 675, 702, 921
DpnII GATC 6 cut(s) 27, 457, 554, 673, 700, 919
EaeI YGGCCR 3 cut(s) 192, 690, 741
EagI CGGCCG 1 cut(s) 690
EclXI CGGCCG 1 cut(s) 690
Eco130I CCWWGG 1 cut(s) 461
Eco31I GGTCTC 1 cut(s) 913
Eco32I GATATC 1 cut(s) 543
Eco47I GGWCC 1 cut(s) 153
Eco52I CGGCCG 1 cut(s) 690
Eco88I CYCGRG 2 cut(s) 295, 546
Eco91I GGTNACC 2 cut(s) 299, 564
EcoO65I GGTNACC 2 cut(s) 299, 564
EcoRII CCWGG 1 cut(s) 194
EcoRV GATATC 1 cut(s) 543
EcoT14I CCWWGG 1 cut(s) 461
ErhI CCWWGG 1 cut(s) 461
Esp3I CGTCTC 1 cut(s) 355
FaqI GGGAC 2 cut(s) 784, 826
FauI CCCGC 5 cut(s) 260, 397, 496, 508, 656
FblI GTMKAC 1 cut(s) 357
Fnu4HI GCNGC 1 cut(s) 265
FokI GGATG 3 cut(s) 461, 588, 683
Fsp4HI GCNGC 1 cut(s) 265
FspBI CTAG 1 cut(s) 713
GluI GCNGC 1 cut(s) 265
GsuI CTGGAG 1 cut(s) 127
HaeIII GGCC 4 cut(s) 194, 453, 692, 743
HapII CCGG 9 cut(s) 151, 182, 227, 364, 374, 570, 653, 689, 744
HincII GTYRAC 1 cut(s) 358
HindII GTYRAC 1 cut(s) 358
HinfI GANTC 2 cut(s) 404, 872
HpaII CCGG 9 cut(s) 151, 182, 227, 364, 374, 570, 653, 689, 744
HphI GGTGA 1 cut(s) 518
Hpy166II GTNNAC 3 cut(s) 76, 253, 358
Hpy188I TCNGA 7 cut(s) 112, 178, 554, 678, 705, 861, 877
Hpy188III TCNNGA 1 cut(s) 653
Hpy8I GTNNAC 3 cut(s) 76, 253, 358
Hpy99I CGWCG 3 cut(s) 332, 359, 404
HpyAV CCTTC 4 cut(s) 73, 117, 787, 922
HpyCH4III ACNGT 2 cut(s) 512, 817
HpyCH4IV ACGT 2 cut(s) 312, 339
HpyCH4V TGCA 3 cut(s) 440, 479, 601
HpyF10VI GCNNNNNNNGC 1 cut(s) 437
HpyF3I CTNAG 3 cut(s) 111, 704, 876
HpySE526I ACGT 2 cut(s) 312, 339
Kpn2I TCCGGA 1 cut(s) 652
Kzo9I GATC 6 cut(s) 27, 457, 554, 673, 700, 919
LmnI GCTCC 2 cut(s) 243, 376
LweI GCATC 1 cut(s) 610
MaeI CTAG 1 cut(s) 713
MaeII ACGT 2 cut(s) 312, 339
MaeIII GTNAC 3 cut(s) 299, 506, 564
MalI GATC 6 cut(s) 29, 459, 556, 675, 702, 921
MboI GATC 6 cut(s) 27, 457, 554, 673, 700, 919
MboII GAAGA 5 cut(s) 49, 58, 589, 635, 844
MflI RGATCY 1 cut(s) 700
MhlI GDGCHC 2 cut(s) 381, 420
MluCI AATT 1 cut(s) 53
MlyI GAGTC 1 cut(s) 398
MmeI TCCRAC 2 cut(s) 532, 648
MroI TCCGGA 1 cut(s) 652
MspI CCGG 9 cut(s) 151, 182, 227, 364, 374, 570, 653, 689, 744
MspR9I CCNGG 5 cut(s) 196, 227, 374, 570, 745
MvaI CCWGG 1 cut(s) 196
MwoI GCNNNNNNNGC 1 cut(s) 437
NciI CCSGG 4 cut(s) 227, 374, 570, 745
NcoI CCATGG 1 cut(s) 461
NdeII GATC 6 cut(s) 27, 457, 554, 673, 700, 919
NlaIV GGNNCC 1 cut(s) 12
NmeAIII GCCGAG 1 cut(s) 170
NmuCI GTSAC 1 cut(s) 506
NspI RCATGY 3 cut(s) 396, 649, 851
PaeI GCATGC 1 cut(s) 396
PciI ACATGT 1 cut(s) 645
PcsI WCGNNNNNNNCGW 3 cut(s) 336, 345, 351
PfeI GAWTC 1 cut(s) 872
PinAI ACCGGT 1 cut(s) 181
PkrI GCNGC 1 cut(s) 266
PleI GAGTC 1 cut(s) 398
PpsI GAGTC 1 cut(s) 398
Ppu21I YACGTR 1 cut(s) 313
PscI ACATGT 1 cut(s) 645
Psp6I CCWGG 1 cut(s) 194
PspEI GGTNACC 2 cut(s) 299, 564
PspGI CCWGG 1 cut(s) 194
PspN4I GGNNCC 1 cut(s) 12
PspPI GGNCC 2 cut(s) 153, 452
PsuI RGATCY 1 cut(s) 700
RsaI GTAC 2 cut(s) 619, 644
RsaNI GTAC 2 cut(s) 618, 643
SalI GTCGAC 1 cut(s) 356
SatI GCNGC 1 cut(s) 265
Sau3AI GATC 6 cut(s) 27, 457, 554, 673, 700, 919
Sau96I GGNCC 2 cut(s) 153, 452
SchI GAGTC 1 cut(s) 398
ScrFI CCNGG 5 cut(s) 196, 227, 374, 570, 745
SduI GDGCHC 2 cut(s) 381, 420
SetI ASST 7 cut(s) 101, 240, 315, 342, 714, 886, 905
SfaNI GCATC 1 cut(s) 610
SinI GGWCC 1 cut(s) 153
SphI GCATGC 1 cut(s) 396
Sse9I AATT 1 cut(s) 53
SsiI CCGC 8 cut(s) 264, 267, 285, 390, 413, 503, 515, 663
SspI AATATT 1 cut(s) 526
SspMI CTAG 1 cut(s) 713
StyD4I CCNGG 5 cut(s) 194, 225, 372, 568, 743
StyI CCWWGG 1 cut(s) 461
TaaI ACNGT 2 cut(s) 512, 817
TaiI ACGT 2 cut(s) 315, 342
TaqI TCGA 3 cut(s) 330, 357, 918
TasI AATT 1 cut(s) 53
TatI WGTACW 1 cut(s) 642
TauI GCSGC 1 cut(s) 267
TfiI GAWTC 1 cut(s) 872
TscAI CASTG 3 cut(s) 40, 151, 517
TseFI GTSAC 1 cut(s) 506
Tsp45I GTSAC 1 cut(s) 506
TspDTI ATGAA 6 cut(s) 17, 91, 193, 878, 904, 911
TspGWI ACGGA 2 cut(s) 343, 635
TspRI CASTG 3 cut(s) 40, 151, 517
VpaK11BI GGWCC 1 cut(s) 153
XceI RCATGY 3 cut(s) 396, 649, 851
XmiI GTMKAC 1 cut(s) 357
XspI CTAG 1 cut(s) 713
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.