RLG00000014610

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0017980
Physical Location & Seq
Forward (+)
55413232 .. 55414076
845 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014610

Sequence Viewer

Length: 768 bp
ATGCCTTCTGAGAAACACCCTCCCTGTGATGGCCCGAGCTCCAGTGTCCGGTCTAAAGATGTCGTCATCTCCTCCGAACCGGTTGTCTTGGCCAAGGTTTTCATGTCCCGAATACCCAACAACCCGGAAAAGAAGTTCCCTCTCGTAGTTTACATTCACGGTGGTAGGTTCTCAATAGCCTCTGCTTTCCACCATGGTTACCACAAATACTTGTCCTCCCTTGTCGCCGAAGCTAACGTCATCGCCGTCTCCGTCGACTATCAGGTTGTAGCGGAGCACCCGATACCCGCATGCTACGATGACTCGTGGGCGGTGCTCAAATGGGTGGCTTTCGATGCAAATGGGGATGGCCCTGATCCGTGGCTGAACAGCCATGCAGATTTGGGTCGGGTCTTTTTGGCGGGTGACAGTGCAGGGGCGAATATTTCCCATAACATGGTATCTCGGGTCAGGTCAACTGGGTTACCCGGAGTGAAGATAGTAGGAGTGGCTTCGATGCATCCTTACTTTGGTGGGACAGAAGATGATAAAATGTGGTTATACATGTGTCCGGAGAATGGCGGGTTGGATCCGAGGCAGAAACTAGCCGTAGAGGATCTGAGAAGGCTAGAGTGTGAGAGGGTTTTGGTGTTTGTTGCCGGGAAAGACCATTTGAGGGAGAGAGGGACTTGTTATGTTGAGGCTTTGAAAGGAAGTGGGTGGAAAGGGACGGTGGAGATTGTAGAGCATGAGGAGGACAGGCATGTCTTCCATCTGAGAAAGCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_3

Protein Analysis

256

Amino Acids

28.2

Weight (kDa)

6.35

Isoelectric Point (pI)

48.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BD-FAE PF20434 38 - 143 1.2e-09 BD-FAE
Abhydrolase_3 PF07859 49 - 251 4.4e-37 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017980)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g06540
rosa_chinensis RchiOBHm_Chr6g0258461
rosa_laevigata RLG00000014610 RLG00000014611
rosa_multiflora Rmu_sc0008229.1_g000008 Rmu_sc0008229.1_g000010
rosa_roxburghii Rroxscaffold_178G00437460 Rroxscaffold_7G00205710
rosa_rugosa Rorug05G0581800
rosa_samantha Rh6CG086700
rosa_wichuraiana Rw6G008510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 743
AccB7I CCANNNNNTGG 1 cut(s) 436
AccI GTMKAC 1 cut(s) 255
AccIII TCCGGA 1 cut(s) 550
AciI CCGC 5 cut(s) 272, 288, 311, 401, 561
AclWI GGATC 4 cut(s) 350, 563, 576, 603
AcoI YGGCCR 1 cut(s) 90
AfiI CCNNNNNNNGG 6 cut(s) 29, 48, 436, 509, 557, 655
AflIII ACRYGT 1 cut(s) 543
AgeI ACCGGT 1 cut(s) 79
AgsI TTSAA 1 cut(s) 688
AjuI GAANNNNNNNTTGG 2 cut(s) 548, 580
AloI GAACNNNNNNTCC 2 cut(s) 119, 151
AluBI AGCT 3 cut(s) 39, 233, 763
AluI AGCT 3 cut(s) 39, 233, 763
Alw21I GWGCWC 3 cut(s) 41, 279, 318
Alw26I GTCTC 1 cut(s) 253
AlwI GGATC 4 cut(s) 350, 563, 576, 603
Ama87I CYCGRG 2 cut(s) 34, 444
Aor13HI TCCGGA 1 cut(s) 550
AoxI GGCC 3 cut(s) 31, 90, 349
ArsI GACNNNNNNTTYG 4 cut(s) 69, 101, 222, 254
AsiGI ACCGGT 1 cut(s) 79
AspS9I GGNCC 2 cut(s) 32, 350
AsuC2I CCSGG 3 cut(s) 125, 468, 640
AsuHPI GGTGA 1 cut(s) 416
AvaI CYCGRG 2 cut(s) 34, 444
BalI TGGCCA 1 cut(s) 92
BamHI GGATCC 1 cut(s) 568
BanII GRGCYC 1 cut(s) 41
BauI CACGAG 1 cut(s) 304
BbsI GAAGAC 1 cut(s) 739
Bbv12I GWGCWC 3 cut(s) 41, 279, 318
BccI CCATC 3 cut(s) 23, 341, 759
BceAI ACGGC 2 cut(s) 230, 572
BcnI CCSGG 3 cut(s) 125, 468, 640
BcoDI GTCTC 1 cut(s) 253
BfaI CTAG 2 cut(s) 584, 608
Bme1390I CCNGG 3 cut(s) 125, 468, 640
BmeT110I CYCGRG 2 cut(s) 34, 444
BmgT120I GGNCC 2 cut(s) 32, 350
BmiI GGNNCC 1 cut(s) 570
BmrFI CCNGG 3 cut(s) 125, 468, 640
BmrI ACTGGG 1 cut(s) 468
BmsI GCATC 3 cut(s) 325, 486, 508
BmuI ACTGGG 1 cut(s) 468
BpiI GAAGAC 1 cut(s) 739
BpmI CTGGAG 1 cut(s) 25
BpuMI CCSGG 3 cut(s) 125, 468, 640
BsaJI CCNNGG 4 cut(s) 93, 193, 359, 572
BsaWI WCCGGW 3 cut(s) 48, 79, 550
BsaXI ACNNNNNCTCC 2 cut(s) 200, 230
Bsc4I CCNNNNNNNGG 6 cut(s) 29, 48, 436, 509, 557, 655
Bse118I RCCGGY 1 cut(s) 79
Bse1I ACTGG 2 cut(s) 42, 463
BseAI TCCGGA 1 cut(s) 550
BseDI CCNNGG 4 cut(s) 93, 193, 359, 572
BseGI GGATG 2 cut(s) 352, 499
BseLI CCNNNNNNNGG 6 cut(s) 29, 48, 436, 509, 557, 655
BseMII CTCAG 2 cut(s) 590, 746
BseNI ACTGG 2 cut(s) 42, 463
BseRI GAGGAG 2 cut(s) 61, 746
BsgI GTGCAG 1 cut(s) 432
BshFI GGCC 3 cut(s) 33, 92, 351
BshTI ACCGGT 1 cut(s) 79
BsiHKAI GWGCWC 3 cut(s) 41, 279, 318
BsiHKCI CYCGRG 2 cut(s) 34, 444
BsiSI CCGG 6 cut(s) 49, 80, 125, 468, 551, 639
BslFI GGGAC 4 cut(s) 91, 529, 679, 721
BslI CCNNNNNNNGG 6 cut(s) 29, 48, 436, 509, 557, 655
BsmAI GTCTC 1 cut(s) 253
BsmBI CGTCTC 1 cut(s) 253
BsmFI GGGAC 4 cut(s) 91, 529, 679, 721
BsnI GGCC 3 cut(s) 33, 92, 351
BsoBI CYCGRG 2 cut(s) 34, 444
Bsp1286I GDGCHC 3 cut(s) 41, 279, 318
Bsp13I TCCGGA 1 cut(s) 550
Bsp143I GATC 3 cut(s) 355, 568, 595
Bsp19I CCATGG 1 cut(s) 193
BspACI CCGC 5 cut(s) 272, 288, 311, 401, 561
BspANI GGCC 3 cut(s) 33, 92, 351
BspCNI CTCAG 2 cut(s) 591, 747
BspEI TCCGGA 1 cut(s) 550
BspLI GGNNCC 1 cut(s) 570
BspPI GGATC 4 cut(s) 350, 563, 576, 603
BsrFI RCCGGY 1 cut(s) 79
BsrI ACTGG 2 cut(s) 42, 463
BssAI RCCGGY 1 cut(s) 79
BssECI CCNNGG 4 cut(s) 93, 193, 359, 572
BssMI GATC 3 cut(s) 355, 568, 595
BssSI CACGAG 1 cut(s) 304
BssT1I CCWWGG 2 cut(s) 93, 193
Bst2BI CACGAG 1 cut(s) 304
Bst4CI ACNGT 3 cut(s) 161, 410, 712
BstC8I GCNNGC 1 cut(s) 292
BstDEI CTNAG 3 cut(s) 9, 599, 755
BstDSI CCRYGG 2 cut(s) 193, 359
BstEII GGTNACC 2 cut(s) 197, 462
BstF5I GGATG 2 cut(s) 352, 499
BstKTI GATC 3 cut(s) 358, 571, 598
BstMAI GTCTC 1 cut(s) 253
BstMBI GATC 3 cut(s) 355, 568, 595
BstMWI GCNNNNNNNGC 1 cut(s) 335
BstNSI RCATGY 3 cut(s) 294, 547, 746
BstPI GGTNACC 2 cut(s) 197, 462
BstSCI CCNGG 3 cut(s) 123, 466, 638
BstV2I GAAGAC 1 cut(s) 739
BstX2I RGATCY 2 cut(s) 568, 595
BstYI RGATCY 2 cut(s) 568, 595
BsuRI GGCC 3 cut(s) 33, 92, 351
BtgI CCRYGG 2 cut(s) 193, 359
BtgZI GCGATG 1 cut(s) 226
BtsCI GGATG 2 cut(s) 352, 499
BtsIMutI CAGTG 2 cut(s) 49, 415
Cac8I GCNNGC 1 cut(s) 292
Cfr10I RCCGGY 1 cut(s) 79
Cfr13I GGNCC 2 cut(s) 32, 350
CspAI ACCGGT 1 cut(s) 79
CviAII CATG 8 cut(s) 103, 194, 291, 374, 436, 544, 728, 743
DdeI CTNAG 3 cut(s) 9, 599, 755
DpnI GATC 3 cut(s) 357, 570, 597
DpnII GATC 3 cut(s) 355, 568, 595
DrdI GACNNNNNNGTC 1 cut(s) 743
DseDI GACNNNNNNGTC 1 cut(s) 743
EaeI YGGCCR 1 cut(s) 90
Ecl136II GAGCTC 1 cut(s) 39
Eco130I CCWWGG 2 cut(s) 93, 193
Eco24I GRGCYC 1 cut(s) 41
Eco53kI GAGCTC 1 cut(s) 39
Eco88I CYCGRG 2 cut(s) 34, 444
Eco91I GGTNACC 2 cut(s) 197, 462
EcoICRI GAGCTC 1 cut(s) 39
EcoO65I GGTNACC 2 cut(s) 197, 462
EcoT14I CCWWGG 2 cut(s) 93, 193
EcoT22I ATGCAT 1 cut(s) 501
EcoT38I GRGCYC 1 cut(s) 41
ErhI CCWWGG 2 cut(s) 93, 193
Esp3I CGTCTC 1 cut(s) 253
FaeI CATG 8 cut(s) 106, 197, 294, 377, 439, 547, 731, 746
FaqI GGGAC 4 cut(s) 91, 529, 679, 721
FatI CATG 8 cut(s) 102, 193, 290, 373, 435, 543, 727, 742
FauI CCCGC 3 cut(s) 295, 394, 554
FblI GTMKAC 1 cut(s) 255
FokI GGATG 2 cut(s) 359, 486
FriOI GRGCYC 1 cut(s) 41
FspBI CTAG 2 cut(s) 584, 608
GsuI CTGGAG 1 cut(s) 25
HaeIII GGCC 3 cut(s) 33, 92, 351
HapII CCGG 6 cut(s) 49, 80, 125, 468, 551, 639
Hin1II CATG 8 cut(s) 106, 197, 294, 377, 439, 547, 731, 746
HincII GTYRAC 2 cut(s) 256, 456
HindII GTYRAC 2 cut(s) 256, 456
HinfI GANTC 1 cut(s) 302
HpaII CCGG 6 cut(s) 49, 80, 125, 468, 551, 639
HphI GGTGA 1 cut(s) 416
Hpy166II GTNNAC 3 cut(s) 151, 256, 456
Hpy188I TCNGA 5 cut(s) 10, 76, 573, 600, 756
Hpy188III TCNNGA 2 cut(s) 108, 551
Hpy8I GTNNAC 3 cut(s) 151, 256, 456
Hpy99I CGWCG 1 cut(s) 257
HpyAV CCTTC 2 cut(s) 15, 597
HpyCH4III ACNGT 3 cut(s) 161, 410, 712
HpyCH4IV ACGT 1 cut(s) 237
HpyCH4V TGCA 4 cut(s) 338, 377, 413, 499
HpyF10VI GCNNNNNNNGC 1 cut(s) 335
HpyF3I CTNAG 3 cut(s) 9, 599, 755
HpySE526I ACGT 1 cut(s) 237
Hsp92II CATG 8 cut(s) 106, 197, 294, 377, 439, 547, 731, 746
Kpn2I TCCGGA 1 cut(s) 550
Kzo9I GATC 3 cut(s) 355, 568, 595
LmnI GCTCC 2 cut(s) 44, 274
LweI GCATC 3 cut(s) 325, 486, 508
MaeI CTAG 2 cut(s) 584, 608
MaeII ACGT 1 cut(s) 237
MaeIII GTNAC 3 cut(s) 197, 404, 462
MalI GATC 3 cut(s) 357, 570, 597
MboI GATC 3 cut(s) 355, 568, 595
MboII GAAGA 3 cut(s) 487, 533, 739
MflI RGATCY 2 cut(s) 568, 595
MhlI GDGCHC 3 cut(s) 41, 279, 318
MlsI TGGCCA 1 cut(s) 92
MluNI TGGCCA 1 cut(s) 92
MlyI GAGTC 1 cut(s) 296
MmeI TCCRAC 1 cut(s) 546
Mox20I TGGCCA 1 cut(s) 92
Mph1103I ATGCAT 1 cut(s) 501
MroI TCCGGA 1 cut(s) 550
MscI TGGCCA 1 cut(s) 92
Msp20I TGGCCA 1 cut(s) 92
MspI CCGG 6 cut(s) 49, 80, 125, 468, 551, 639
MspR9I CCNGG 3 cut(s) 125, 468, 640
MwoI GCNNNNNNNGC 1 cut(s) 335
NciI CCSGG 3 cut(s) 125, 468, 640
NcoI CCATGG 1 cut(s) 193
NdeII GATC 3 cut(s) 355, 568, 595
NlaIII CATG 8 cut(s) 106, 197, 294, 377, 439, 547, 731, 746
NlaIV GGNNCC 1 cut(s) 570
NmuCI GTSAC 1 cut(s) 404
NsiI ATGCAT 1 cut(s) 501
NspI RCATGY 3 cut(s) 294, 547, 746
PaeI GCATGC 1 cut(s) 294
PciI ACATGT 1 cut(s) 543
PcsI WCGNNNNNNNCGW 2 cut(s) 243, 249
PflMI CCANNNNNTGG 1 cut(s) 436
PinAI ACCGGT 1 cut(s) 79
PleI GAGTC 1 cut(s) 296
PpsI GAGTC 1 cut(s) 296
PscI ACATGT 1 cut(s) 543
Psp124BI GAGCTC 1 cut(s) 41
PspEI GGTNACC 2 cut(s) 197, 462
PspN4I GGNNCC 1 cut(s) 570
PspPI GGNCC 2 cut(s) 32, 350
PsuI RGATCY 2 cut(s) 568, 595
SacI GAGCTC 1 cut(s) 41
SalI GTCGAC 1 cut(s) 254
Sau3AI GATC 3 cut(s) 355, 568, 595
Sau96I GGNCC 2 cut(s) 32, 350
SchI GAGTC 1 cut(s) 296
ScrFI CCNGG 3 cut(s) 125, 468, 640
SduI GDGCHC 3 cut(s) 41, 279, 318
SetI ASST 8 cut(s) 41, 99, 170, 235, 240, 267, 455, 765
SfaNI GCATC 3 cut(s) 325, 486, 508
SphI GCATGC 1 cut(s) 294
SsiI CCGC 5 cut(s) 272, 288, 311, 401, 561
SspI AATATT 1 cut(s) 424
SspMI CTAG 2 cut(s) 584, 608
SstI GAGCTC 1 cut(s) 41
StyD4I CCNGG 3 cut(s) 123, 466, 638
StyI CCWWGG 2 cut(s) 93, 193
TaaI ACNGT 3 cut(s) 161, 410, 712
TaiI ACGT 1 cut(s) 240
TaqI TCGA 3 cut(s) 255, 333, 494
TscAI CASTG 2 cut(s) 49, 415
TseFI GTSAC 1 cut(s) 404
Tsp45I GTSAC 1 cut(s) 404
TspDTI ATGAA 1 cut(s) 91
TspGWI ACGGA 2 cut(s) 241, 348
TspRI CASTG 2 cut(s) 49, 415
Van91I CCANNNNNTGG 1 cut(s) 436
XceI RCATGY 3 cut(s) 294, 547, 746
XmiI GTMKAC 1 cut(s) 255
XspI CTAG 2 cut(s) 584, 608
Zsp2I ATGCAT 1 cut(s) 501
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.