Rroxscaffold_178G00437460

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000178
OG0017980
Physical Location & Seq
Reverse (-)
198886 .. 200289
1404 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_178G00437460.1

Sequence Viewer

Length: 831 bp
ATGCCTTCTGAGAAACACCCTCCCTGTGATGACCCGAACTCCAGTGTCCGGTCCAAAGATGTCGTCATCTCCTCCGAACCAGTTGTCTCGGCCAGGGTTTTCATGCCCCGAATACCCAGCAACCCGGAAAAGAAGCTCCCTCTCGTGGTTTACATTCACGGCGGCGGGTTCTCAATAGCCTCTGCTTTCCACTCGGGTTACCACAAATACGTGTCCTCCCTTGTCGCCGAAGCCAACGTCATCGCCGTCTCCGTCGACTACCGGCTTGCCCCGGAGCACCCAATACCCGCATGCTACGACGACTCGTGGGCGGTGCTCAAATGGGTGGCTTCCCATGCAAATAGGGATGGCCCTGATCCATGGCTGAACAGCCATGCAGATTTGGGTAGGGTTTTTTTGGCGGGTGACAGTGCCGGGGCGAATATTTCCCACAACATGATATCTCGGGTCGGGTCAACTGGGTTACCCGGAGTGAAAATAGTAGGAGTGGCTTTGGTGCATCCTTACTTTGGCGGTACGGAAGATGATAAAATGTGGCTGTACATGTGTCCGGAGAATGGCGGGTTGGATGATCCGAGGCTGAAACCGGCCGTAGAGGATCTGAGAAAGCTAGAGTGTGAGAGGGTTTTGGTGTTTGTGGCCGGGAAAGACCATTTGAGGGAGAGAGGGACTTGTTATGTTGAGGCTTTGAAGGGAAGTGGGTGGAAAGGGATGGTGGAGATTGTAGAGCATGAGGAGGAGAGGCATGTCTTCCATCTGATGAAGCCTGAATCTGAGAAAGCTGTGGATTTGTTGAATAGGTTGGTCTCCTTCATCAATCAAGCAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_3

Protein Analysis

276

Amino Acids

30.4

Weight (kDa)

5.9

Isoelectric Point (pI)

40.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COesterase PF00135 32 - 142 2.5e-09 Carboxylesterase family
BD-FAE PF20434 38 - 143 5.3e-13 BD-FAE
Abhydrolase_3 PF07859 49 - 252 8.6e-46 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017980)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g06540
rosa_chinensis RchiOBHm_Chr6g0258461
rosa_laevigata RLG00000014610 RLG00000014611
rosa_multiflora Rmu_sc0008229.1_g000008 Rmu_sc0008229.1_g000010
rosa_roxburghii Rroxscaffold_178G00437460 Rroxscaffold_7G00205710
rosa_rugosa Rorug05G0581800
rosa_samantha Rh6CG086700
rosa_wichuraiana Rw6G008510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 255
AccIII TCCGGA 1 cut(s) 550
AciI CCGC 7 cut(s) 162, 165, 288, 311, 401, 513, 561
AclWI GGATC 3 cut(s) 350, 566, 606
AcoI YGGCCR 3 cut(s) 90, 588, 639
AfaI GTAC 2 cut(s) 517, 542
AfiI CCNNNNNNNGG 5 cut(s) 48, 145, 509, 557, 658
AflIII ACRYGT 2 cut(s) 210, 543
AgsI TTSAA 2 cut(s) 691, 796
AjnI CCWGG 1 cut(s) 92
AjuI GAANNNNNNNTTGG 2 cut(s) 548, 580
AluBI AGCT 3 cut(s) 136, 610, 782
AluI AGCT 3 cut(s) 136, 610, 782
Alw21I GWGCWC 2 cut(s) 279, 318
Alw26I GTCTC 3 cut(s) 91, 253, 811
AlwI GGATC 3 cut(s) 350, 566, 606
Ama87I CYCGRG 2 cut(s) 193, 444
Aor13HI TCCGGA 1 cut(s) 550
AoxI GGCC 4 cut(s) 90, 349, 588, 639
ArsI GACNNNNNNTTYG 6 cut(s) 48, 69, 80, 101, 222, 254
AspS9I GGNCC 2 cut(s) 51, 350
AsuC2I CCSGG 5 cut(s) 125, 272, 415, 468, 643
AsuHPI GGTGA 1 cut(s) 416
AvaI CYCGRG 2 cut(s) 193, 444
AvaII GGWCC 1 cut(s) 51
BauI CACGAG 2 cut(s) 143, 304
BbsI GAAGAC 1 cut(s) 742
Bbv12I GWGCWC 2 cut(s) 279, 318
BccI CCATC 3 cut(s) 341, 706, 762
BceAI ACGGC 3 cut(s) 175, 230, 575
BciT130I CCWGG 1 cut(s) 94
BcnI CCSGG 5 cut(s) 125, 272, 415, 468, 643
BcoDI GTCTC 3 cut(s) 91, 253, 811
BfaI CTAG 1 cut(s) 611
BisI GCNGC 1 cut(s) 163
BlsI GCNGC 1 cut(s) 164
Bme1390I CCNGG 6 cut(s) 94, 125, 272, 415, 468, 643
Bme18I GGWCC 1 cut(s) 51
BmeT110I CYCGRG 2 cut(s) 193, 444
BmgT120I GGNCC 2 cut(s) 51, 350
BmrFI CCNGG 6 cut(s) 94, 125, 272, 415, 468, 643
BmrI ACTGGG 1 cut(s) 468
BmsI GCATC 1 cut(s) 508
BmuI ACTGGG 1 cut(s) 468
BpiI GAAGAC 1 cut(s) 742
BpmI CTGGAG 1 cut(s) 25
BpuMI CCSGG 5 cut(s) 125, 272, 415, 468, 643
BsaAI YACGTR 1 cut(s) 211
BsaI GGTCTC 1 cut(s) 811
BsaJI CCNNGG 5 cut(s) 93, 270, 359, 414, 575
BsaWI WCCGGW 2 cut(s) 48, 550
BsaXI ACNNNNNCTCC 4 cut(s) 23, 53, 200, 230
Bsc4I CCNNNNNNNGG 5 cut(s) 48, 145, 509, 557, 658
Bse118I RCCGGY 2 cut(s) 261, 586
Bse1I ACTGG 3 cut(s) 42, 80, 463
BseAI TCCGGA 1 cut(s) 550
BseBI CCWGG 1 cut(s) 94
BseDI CCNNGG 5 cut(s) 93, 270, 359, 414, 575
BseGI GGATG 4 cut(s) 352, 499, 574, 717
BseLI CCNNNNNNNGG 5 cut(s) 48, 145, 509, 557, 658
BseMII CTCAG 2 cut(s) 593, 765
BseNI ACTGG 3 cut(s) 42, 80, 463
BseRI GAGGAG 3 cut(s) 61, 749, 752
BseX3I CGGCCG 1 cut(s) 588
BseYI CCCAGC 1 cut(s) 116
Bsh1285I CGRYCG 1 cut(s) 591
BshFI GGCC 4 cut(s) 92, 351, 590, 641
BsiEI CGRYCG 1 cut(s) 591
BsiHKAI GWGCWC 2 cut(s) 279, 318
BsiHKCI CYCGRG 2 cut(s) 193, 444
BsiSI CCGG 9 cut(s) 49, 125, 262, 272, 414, 468, 551, 587, 642
BslFI GGGAC 1 cut(s) 682
BslI CCNNNNNNNGG 5 cut(s) 48, 145, 509, 557, 658
BsmAI GTCTC 3 cut(s) 91, 253, 811
BsmBI CGTCTC 1 cut(s) 253
BsmFI GGGAC 1 cut(s) 682
BsnI GGCC 4 cut(s) 92, 351, 590, 641
Bso31I GGTCTC 1 cut(s) 811
BsoBI CYCGRG 2 cut(s) 193, 444
Bsp1286I GDGCHC 2 cut(s) 279, 318
Bsp13I TCCGGA 1 cut(s) 550
Bsp1407I TGTACA 1 cut(s) 540
Bsp143I GATC 3 cut(s) 355, 571, 598
Bsp19I CCATGG 1 cut(s) 359
BspACI CCGC 7 cut(s) 162, 165, 288, 311, 401, 513, 561
BspANI GGCC 4 cut(s) 92, 351, 590, 641
BspCNI CTCAG 2 cut(s) 594, 766
BspEI TCCGGA 1 cut(s) 550
BspPI GGATC 3 cut(s) 350, 566, 606
BspTNI GGTCTC 1 cut(s) 811
BsrFI RCCGGY 2 cut(s) 261, 586
BsrGI TGTACA 1 cut(s) 540
BsrI ACTGG 3 cut(s) 42, 80, 463
BssAI RCCGGY 2 cut(s) 261, 586
BssECI CCNNGG 5 cut(s) 93, 270, 359, 414, 575
BssMI GATC 3 cut(s) 355, 571, 598
BssSI CACGAG 2 cut(s) 143, 304
BssT1I CCWWGG 1 cut(s) 359
Bst2BI CACGAG 2 cut(s) 143, 304
Bst2UI CCWGG 1 cut(s) 94
Bst4CI ACNGT 1 cut(s) 410
BstAUI TGTACA 1 cut(s) 540
BstBAI YACGTR 1 cut(s) 211
BstC8I GCNNGC 2 cut(s) 267, 292
BstDEI CTNAG 3 cut(s) 9, 602, 774
BstDSI CCRYGG 1 cut(s) 359
BstEII GGTNACC 2 cut(s) 197, 462
BstF5I GGATG 4 cut(s) 352, 499, 574, 717
BstKTI GATC 3 cut(s) 358, 574, 601
BstMAI GTCTC 3 cut(s) 91, 253, 811
BstMBI GATC 3 cut(s) 355, 571, 598
BstMCI CGRYCG 1 cut(s) 591
BstMWI GCNNNNNNNGC 1 cut(s) 335
BstNI CCWGG 1 cut(s) 94
BstNSI RCATGY 3 cut(s) 294, 547, 749
BstPI GGTNACC 2 cut(s) 197, 462
BstSCI CCNGG 6 cut(s) 92, 123, 270, 413, 466, 641
BstV2I GAAGAC 1 cut(s) 742
BstX2I RGATCY 1 cut(s) 598
BstYI RGATCY 1 cut(s) 598
BstZI CGGCCG 1 cut(s) 588
BsuRI GGCC 4 cut(s) 92, 351, 590, 641
BtgI CCRYGG 1 cut(s) 359
BtgZI GCGATG 1 cut(s) 226
BtsCI GGATG 4 cut(s) 352, 499, 574, 717
BtsIMutI CAGTG 2 cut(s) 49, 415
Cac8I GCNNGC 2 cut(s) 267, 292
Cfr10I RCCGGY 2 cut(s) 261, 586
Cfr13I GGNCC 2 cut(s) 51, 350
Csp6I GTAC 2 cut(s) 516, 541
CviAII CATG 9 cut(s) 103, 291, 335, 360, 374, 436, 544, 731, 746
CviQI GTAC 2 cut(s) 516, 541
DdeI CTNAG 3 cut(s) 9, 602, 774
DpnI GATC 3 cut(s) 357, 573, 600
DpnII GATC 3 cut(s) 355, 571, 598
EaeI YGGCCR 3 cut(s) 90, 588, 639
EagI CGGCCG 1 cut(s) 588
EclXI CGGCCG 1 cut(s) 588
Eco130I CCWWGG 1 cut(s) 359
Eco31I GGTCTC 1 cut(s) 811
Eco32I GATATC 1 cut(s) 441
Eco47I GGWCC 1 cut(s) 51
Eco52I CGGCCG 1 cut(s) 588
Eco88I CYCGRG 2 cut(s) 193, 444
Eco91I GGTNACC 2 cut(s) 197, 462
EcoO65I GGTNACC 2 cut(s) 197, 462
EcoRII CCWGG 1 cut(s) 92
EcoRV GATATC 1 cut(s) 441
EcoT14I CCWWGG 1 cut(s) 359
ErhI CCWWGG 1 cut(s) 359
Esp3I CGTCTC 1 cut(s) 253
FaeI CATG 9 cut(s) 106, 294, 338, 363, 377, 439, 547, 734, 749
FaqI GGGAC 1 cut(s) 682
FatI CATG 9 cut(s) 102, 290, 334, 359, 373, 435, 543, 730, 745
FauI CCCGC 4 cut(s) 158, 295, 394, 554
FblI GTMKAC 1 cut(s) 255
Fnu4HI GCNGC 1 cut(s) 163
FokI GGATG 4 cut(s) 359, 486, 581, 724
Fsp4HI GCNGC 1 cut(s) 163
FspBI CTAG 1 cut(s) 611
GluI GCNGC 1 cut(s) 163
GsaI CCCAGC 1 cut(s) 120
GsuI CTGGAG 1 cut(s) 25
HaeIII GGCC 4 cut(s) 92, 351, 590, 641
HapII CCGG 9 cut(s) 49, 125, 262, 272, 414, 468, 551, 587, 642
Hin1II CATG 9 cut(s) 106, 294, 338, 363, 377, 439, 547, 734, 749
HincII GTYRAC 2 cut(s) 256, 456
HindII GTYRAC 2 cut(s) 256, 456
HinfI GANTC 2 cut(s) 302, 770
HpaII CCGG 9 cut(s) 49, 125, 262, 272, 414, 468, 551, 587, 642
HphI GGTGA 1 cut(s) 416
Hpy166II GTNNAC 3 cut(s) 151, 256, 456
Hpy188I TCNGA 6 cut(s) 10, 76, 576, 603, 759, 775
Hpy188III TCNNGA 1 cut(s) 551
Hpy8I GTNNAC 3 cut(s) 151, 256, 456
Hpy99I CGWCG 2 cut(s) 257, 302
HpyAV CCTTC 3 cut(s) 15, 685, 820
HpyCH4III ACNGT 1 cut(s) 410
HpyCH4IV ACGT 2 cut(s) 210, 237
HpyCH4V TGCA 3 cut(s) 338, 377, 499
HpyF10VI GCNNNNNNNGC 1 cut(s) 335
HpyF3I CTNAG 3 cut(s) 9, 602, 774
HpySE526I ACGT 2 cut(s) 210, 237
Hsp92II CATG 9 cut(s) 106, 294, 338, 363, 377, 439, 547, 734, 749
Kpn2I TCCGGA 1 cut(s) 550
Kzo9I GATC 3 cut(s) 355, 571, 598
LmnI GCTCC 2 cut(s) 141, 274
LweI GCATC 1 cut(s) 508
MaeI CTAG 1 cut(s) 611
MaeII ACGT 2 cut(s) 210, 237
MaeIII GTNAC 3 cut(s) 197, 404, 462
MalI GATC 3 cut(s) 357, 573, 600
MboI GATC 3 cut(s) 355, 571, 598
MboII GAAGA 2 cut(s) 533, 742
MflI RGATCY 1 cut(s) 598
MhlI GDGCHC 2 cut(s) 279, 318
MlyI GAGTC 1 cut(s) 296
MmeI TCCRAC 1 cut(s) 546
MroI TCCGGA 1 cut(s) 550
MspI CCGG 9 cut(s) 49, 125, 262, 272, 414, 468, 551, 587, 642
MspR9I CCNGG 6 cut(s) 94, 125, 272, 415, 468, 643
MvaI CCWGG 1 cut(s) 94
MwoI GCNNNNNNNGC 1 cut(s) 335
NciI CCSGG 5 cut(s) 125, 272, 415, 468, 643
NcoI CCATGG 1 cut(s) 359
NdeII GATC 3 cut(s) 355, 571, 598
NlaIII CATG 9 cut(s) 106, 294, 338, 363, 377, 439, 547, 734, 749
NmeAIII GCCGAG 1 cut(s) 68
NmuCI GTSAC 1 cut(s) 404
NspI RCATGY 3 cut(s) 294, 547, 749
PaeI GCATGC 1 cut(s) 294
PciI ACATGT 1 cut(s) 543
PcsI WCGNNNNNNNCGW 2 cut(s) 243, 249
PfeI GAWTC 1 cut(s) 770
PkrI GCNGC 1 cut(s) 164
PleI GAGTC 1 cut(s) 296
PpsI GAGTC 1 cut(s) 296
Ppu21I YACGTR 1 cut(s) 211
PscI ACATGT 1 cut(s) 543
Psp6I CCWGG 1 cut(s) 92
PspEI GGTNACC 2 cut(s) 197, 462
PspFI CCCAGC 1 cut(s) 116
PspGI CCWGG 1 cut(s) 92
PspPI GGNCC 2 cut(s) 51, 350
PsuI RGATCY 1 cut(s) 598
RsaI GTAC 2 cut(s) 517, 542
RsaNI GTAC 2 cut(s) 516, 541
SalI GTCGAC 1 cut(s) 254
SatI GCNGC 1 cut(s) 163
Sau3AI GATC 3 cut(s) 355, 571, 598
Sau96I GGNCC 2 cut(s) 51, 350
SchI GAGTC 1 cut(s) 296
ScrFI CCNGG 6 cut(s) 94, 125, 272, 415, 468, 643
SduI GDGCHC 2 cut(s) 279, 318
SetI ASST 6 cut(s) 138, 213, 240, 612, 784, 803
SfaNI GCATC 1 cut(s) 508
SinI GGWCC 1 cut(s) 51
SphI GCATGC 1 cut(s) 294
SsiI CCGC 7 cut(s) 162, 165, 288, 311, 401, 513, 561
SspI AATATT 1 cut(s) 424
SspMI CTAG 1 cut(s) 611
StyD4I CCNGG 6 cut(s) 92, 123, 270, 413, 466, 641
StyI CCWWGG 1 cut(s) 359
TaaI ACNGT 1 cut(s) 410
TaiI ACGT 2 cut(s) 213, 240
TaqI TCGA 1 cut(s) 255
TatI WGTACW 1 cut(s) 540
TauI GCSGC 1 cut(s) 165
TfiI GAWTC 1 cut(s) 770
TscAI CASTG 2 cut(s) 49, 415
TseFI GTSAC 1 cut(s) 404
Tsp45I GTSAC 1 cut(s) 404
TspDTI ATGAA 3 cut(s) 91, 776, 802
TspGWI ACGGA 2 cut(s) 241, 533
TspRI CASTG 2 cut(s) 49, 415
VpaK11BI GGWCC 1 cut(s) 51
XceI RCATGY 3 cut(s) 294, 547, 749
XmiI GTMKAC 1 cut(s) 255
XspI CTAG 1 cut(s) 611
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.