RLG00000014611

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0017980
Physical Location & Seq
Forward (+)
55443201 .. 55444127
927 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014611

Sequence Viewer

Length: 927 bp
ATGGAACCCCCATCCCCACCGATCATCACTGATGATGTAGCCCACCAATTCTTCCCCTTCTTCAAAGTTTACAGAGATGGTCGTGTAGAGAGGTTCATGCCTTCTGAGAAACATCCTCCCTGCGATGACCCGAGCTCCAGTGTCCGGTCCAAAGATGTCGCAATCTCCTCCGAACCGGTTGTCTCGGCCAGGGTTTTCATGCCCCGAATACCCAACAAGCAGGAAAAGAAGCTCCCTCTCGTGGTCTACATTCACGGTGGCGGGTTCTCAATAGCCTCCGCTTTCCACCATGGTTACCATAAATACGTGTCCTCCCTTGTCGCCGAAGCTAACGTCATCGCCGTCTCCATAGACTACCGGCTTGCCCCGGAGCACCCAATACCCGCATGCTACGACGACTCGTGGGCGGTGCTCAAATGGGTTGCTTCCCACGCAAATAGGGATGGCCCTGATCCGTGGCTGAACAGCCATGCAGATTTGGGTAGGGTCTTTTTGGCGGGTGACAGTGCCGGGGCAAATATTTCCCATAACATGATATCTCGGGTCAGGTCAACTGGGTTACCCGGAGTGAAGATAGTTGGAGTTGCTCTGGTGCATCCTTACTTTGGTGGTACGGAAGATGATAAAATGTGGTTGTACATGTGTCCGGAGAATGGCGGGTTGGATGATCCGAGGCTGAAACCGGCCGTAGAGGATCTGAGAAGGCTAGAGTGTGAGAGGGTTTTGGTGTTTGTTGCCGGGAAAGACCATTTGAGGGAGAGAGGGACTTGTTATGTTGAGGCTTTGAAGGGAAGTGGGTGGAAAGGGACGGTGGAGATTGTAGAGCATGAGGAGGAGAGACATGTCTTCCATCTGATGAAGCCTGAATCTGAGAAAGCTGTGGATTTGATGAATAGGTTGGTCTCCTTCATCAATCAAGCAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_3

Protein Analysis

309

Amino Acids

34.42

Weight (kDa)

6.1

Isoelectric Point (pI)

46.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COesterase PF00135 64 - 176 8.7e-10 Carboxylesterase family
BD-FAE PF20434 70 - 175 1.3e-13 BD-FAE
Abhydrolase_3 PF07859 81 - 284 8.8e-47 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017980)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g06540
rosa_chinensis RchiOBHm_Chr6g0258461
rosa_laevigata RLG00000014610 RLG00000014611
rosa_multiflora Rmu_sc0008229.1_g000008 Rmu_sc0008229.1_g000010
rosa_roxburghii Rroxscaffold_178G00437460 Rroxscaffold_7G00205710
rosa_rugosa Rorug05G0581800
rosa_samantha Rh6CG086700
rosa_wichuraiana Rw6G008510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 246
AccIII TCCGGA 1 cut(s) 646
AciI CCGC 6 cut(s) 261, 279, 384, 407, 497, 657
AclWI GGATC 3 cut(s) 446, 662, 702
AcoI YGGCCR 2 cut(s) 186, 684
AfaI GTAC 2 cut(s) 613, 638
AfiI CCNNNNNNNGG 5 cut(s) 144, 241, 605, 653, 754
AflIII ACRYGT 3 cut(s) 306, 639, 841
AgeI ACCGGT 1 cut(s) 175
AgsI TTSAA 2 cut(s) 64, 787
AjnI CCWGG 1 cut(s) 188
AjuI GAANNNNNNNTTGG 2 cut(s) 644, 676
AluBI AGCT 4 cut(s) 135, 232, 329, 878
AluI AGCT 4 cut(s) 135, 232, 329, 878
Alw21I GWGCWC 3 cut(s) 137, 375, 414
Alw26I GTCTC 4 cut(s) 187, 349, 832, 907
AlwI GGATC 3 cut(s) 446, 662, 702
Ama87I CYCGRG 2 cut(s) 130, 540
Aor13HI TCCGGA 1 cut(s) 646
AoxI GGCC 3 cut(s) 186, 445, 684
ArsI GACNNNNNNTTYG 4 cut(s) 165, 197, 318, 350
AsiGI ACCGGT 1 cut(s) 175
AspS9I GGNCC 2 cut(s) 147, 446
AsuC2I CCSGG 4 cut(s) 368, 511, 564, 739
AsuHPI GGTGA 1 cut(s) 512
AvaI CYCGRG 2 cut(s) 130, 540
AvaII GGWCC 1 cut(s) 147
BanII GRGCYC 1 cut(s) 137
BauI CACGAG 2 cut(s) 239, 400
BbsI GAAGAC 1 cut(s) 838
Bbv12I GWGCWC 3 cut(s) 137, 375, 414
BccI CCATC 4 cut(s) 19, 71, 437, 858
BceAI ACGGC 2 cut(s) 326, 671
BciT130I CCWGG 1 cut(s) 190
BcnI CCSGG 4 cut(s) 368, 511, 564, 739
BcoDI GTCTC 4 cut(s) 187, 349, 832, 907
BfaI CTAG 1 cut(s) 707
Bme1390I CCNGG 5 cut(s) 190, 368, 511, 564, 739
Bme18I GGWCC 1 cut(s) 147
BmeT110I CYCGRG 2 cut(s) 130, 540
BmgT120I GGNCC 2 cut(s) 147, 446
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 5 cut(s) 190, 368, 511, 564, 739
BmrI ACTGGG 1 cut(s) 564
BmsI GCATC 1 cut(s) 604
BmuI ACTGGG 1 cut(s) 564
BpiI GAAGAC 1 cut(s) 838
BpmI CTGGAG 1 cut(s) 121
BpuMI CCSGG 4 cut(s) 368, 511, 564, 739
BsaAI YACGTR 1 cut(s) 307
BsaI GGTCTC 1 cut(s) 907
BsaJI CCNNGG 6 cut(s) 189, 289, 366, 455, 510, 671
BsaWI WCCGGW 3 cut(s) 144, 175, 646
BsaXI ACNNNNNCTCC 4 cut(s) 119, 149, 296, 326
Bsc4I CCNNNNNNNGG 5 cut(s) 144, 241, 605, 653, 754
Bse118I RCCGGY 3 cut(s) 175, 357, 682
Bse1I ACTGG 2 cut(s) 138, 559
BseAI TCCGGA 1 cut(s) 646
BseBI CCWGG 1 cut(s) 190
BseDI CCNNGG 6 cut(s) 189, 289, 366, 455, 510, 671
BseGI GGATG 5 cut(s) 11, 112, 448, 595, 670
BseLI CCNNNNNNNGG 5 cut(s) 144, 241, 605, 653, 754
BseMII CTCAG 3 cut(s) 96, 689, 861
BseNI ACTGG 2 cut(s) 138, 559
BseRI GAGGAG 3 cut(s) 157, 845, 848
BseX3I CGGCCG 1 cut(s) 684
Bsh1285I CGRYCG 1 cut(s) 687
BshFI GGCC 3 cut(s) 188, 447, 686
BshTI ACCGGT 1 cut(s) 175
BsiEI CGRYCG 1 cut(s) 687
BsiHKAI GWGCWC 3 cut(s) 137, 375, 414
BsiHKCI CYCGRG 2 cut(s) 130, 540
BsiSI CCGG 9 cut(s) 145, 176, 358, 368, 510, 564, 647, 683, 738
BslFI GGGAC 2 cut(s) 778, 820
BslI CCNNNNNNNGG 5 cut(s) 144, 241, 605, 653, 754
BsmAI GTCTC 4 cut(s) 187, 349, 832, 907
BsmBI CGTCTC 1 cut(s) 349
BsmFI GGGAC 2 cut(s) 778, 820
BsnI GGCC 3 cut(s) 188, 447, 686
Bso31I GGTCTC 1 cut(s) 907
BsoBI CYCGRG 2 cut(s) 130, 540
Bsp1286I GDGCHC 3 cut(s) 137, 375, 414
Bsp13I TCCGGA 1 cut(s) 646
Bsp1407I TGTACA 1 cut(s) 636
Bsp143I GATC 4 cut(s) 21, 451, 667, 694
Bsp19I CCATGG 1 cut(s) 289
BspACI CCGC 6 cut(s) 261, 279, 384, 407, 497, 657
BspANI GGCC 3 cut(s) 188, 447, 686
BspCNI CTCAG 3 cut(s) 97, 690, 862
BspEI TCCGGA 1 cut(s) 646
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 3 cut(s) 446, 662, 702
BspTNI GGTCTC 1 cut(s) 907
BsrFI RCCGGY 3 cut(s) 175, 357, 682
BsrGI TGTACA 1 cut(s) 636
BsrI ACTGG 2 cut(s) 138, 559
BssAI RCCGGY 3 cut(s) 175, 357, 682
BssECI CCNNGG 6 cut(s) 189, 289, 366, 455, 510, 671
BssMI GATC 4 cut(s) 21, 451, 667, 694
BssSI CACGAG 2 cut(s) 239, 400
BssT1I CCWWGG 1 cut(s) 289
Bst2BI CACGAG 2 cut(s) 239, 400
Bst2UI CCWGG 1 cut(s) 190
Bst4CI ACNGT 3 cut(s) 257, 506, 811
BstAUI TGTACA 1 cut(s) 636
BstBAI YACGTR 1 cut(s) 307
BstC8I GCNNGC 2 cut(s) 363, 388
BstDEI CTNAG 3 cut(s) 105, 698, 870
BstDSI CCRYGG 2 cut(s) 289, 455
BstEII GGTNACC 2 cut(s) 293, 558
BstF5I GGATG 5 cut(s) 11, 112, 448, 595, 670
BstKTI GATC 4 cut(s) 24, 454, 670, 697
BstMAI GTCTC 4 cut(s) 187, 349, 832, 907
BstMBI GATC 4 cut(s) 21, 451, 667, 694
BstMCI CGRYCG 1 cut(s) 687
BstMWI GCNNNNNNNGC 1 cut(s) 431
BstNI CCWGG 1 cut(s) 190
BstNSI RCATGY 3 cut(s) 390, 643, 845
BstPI GGTNACC 2 cut(s) 293, 558
BstSCI CCNGG 5 cut(s) 188, 366, 509, 562, 737
BstV2I GAAGAC 1 cut(s) 838
BstX2I RGATCY 1 cut(s) 694
BstYI RGATCY 1 cut(s) 694
BstZI CGGCCG 1 cut(s) 684
BsuRI GGCC 3 cut(s) 188, 447, 686
BtgI CCRYGG 2 cut(s) 289, 455
BtgZI GCGATG 2 cut(s) 138, 322
BtsCI GGATG 5 cut(s) 11, 112, 448, 595, 670
BtsIMutI CAGTG 3 cut(s) 27, 145, 511
Cac8I GCNNGC 2 cut(s) 363, 388
Cfr10I RCCGGY 3 cut(s) 175, 357, 682
Cfr13I GGNCC 2 cut(s) 147, 446
Csp6I GTAC 2 cut(s) 612, 637
CspAI ACCGGT 1 cut(s) 175
CviAII CATG 9 cut(s) 97, 199, 290, 387, 470, 532, 640, 827, 842
CviQI GTAC 2 cut(s) 612, 637
DdeI CTNAG 3 cut(s) 105, 698, 870
DpnI GATC 4 cut(s) 23, 453, 669, 696
DpnII GATC 4 cut(s) 21, 451, 667, 694
EaeI YGGCCR 2 cut(s) 186, 684
EagI CGGCCG 1 cut(s) 684
Ecl136II GAGCTC 1 cut(s) 135
EclXI CGGCCG 1 cut(s) 684
Eco130I CCWWGG 1 cut(s) 289
Eco24I GRGCYC 1 cut(s) 137
Eco31I GGTCTC 1 cut(s) 907
Eco32I GATATC 1 cut(s) 537
Eco47I GGWCC 1 cut(s) 147
Eco52I CGGCCG 1 cut(s) 684
Eco53kI GAGCTC 1 cut(s) 135
Eco88I CYCGRG 2 cut(s) 130, 540
Eco91I GGTNACC 2 cut(s) 293, 558
EcoICRI GAGCTC 1 cut(s) 135
EcoO65I GGTNACC 2 cut(s) 293, 558
EcoRII CCWGG 1 cut(s) 188
EcoRV GATATC 1 cut(s) 537
EcoT14I CCWWGG 1 cut(s) 289
EcoT38I GRGCYC 1 cut(s) 137
ErhI CCWWGG 1 cut(s) 289
Esp3I CGTCTC 1 cut(s) 349
FaeI CATG 9 cut(s) 100, 202, 293, 390, 473, 535, 643, 830, 845
FaqI GGGAC 2 cut(s) 778, 820
FatI CATG 9 cut(s) 96, 198, 289, 386, 469, 531, 639, 826, 841
FauI CCCGC 4 cut(s) 254, 391, 490, 650
FblI GTMKAC 1 cut(s) 246
FokI GGATG 4 cut(s) 99, 455, 582, 677
FriOI GRGCYC 1 cut(s) 137
FspBI CTAG 1 cut(s) 707
GsuI CTGGAG 1 cut(s) 121
HaeIII GGCC 3 cut(s) 188, 447, 686
HapII CCGG 9 cut(s) 145, 176, 358, 368, 510, 564, 647, 683, 738
Hin1II CATG 9 cut(s) 100, 202, 293, 390, 473, 535, 643, 830, 845
HincII GTYRAC 1 cut(s) 552
HindII GTYRAC 1 cut(s) 552
HinfI GANTC 2 cut(s) 398, 866
HpaII CCGG 9 cut(s) 145, 176, 358, 368, 510, 564, 647, 683, 738
HphI GGTGA 1 cut(s) 512
Hpy166II GTNNAC 3 cut(s) 70, 247, 552
Hpy188I TCNGA 6 cut(s) 106, 172, 672, 699, 855, 871
Hpy188III TCNNGA 1 cut(s) 647
Hpy8I GTNNAC 3 cut(s) 70, 247, 552
Hpy99I CGWCG 1 cut(s) 398
HpyAV CCTTC 5 cut(s) 67, 111, 696, 781, 916
HpyCH4III ACNGT 3 cut(s) 257, 506, 811
HpyCH4IV ACGT 2 cut(s) 306, 333
HpyCH4V TGCA 2 cut(s) 473, 595
HpyF10VI GCNNNNNNNGC 1 cut(s) 431
HpyF3I CTNAG 3 cut(s) 105, 698, 870
HpySE526I ACGT 2 cut(s) 306, 333
Hsp92II CATG 9 cut(s) 100, 202, 293, 390, 473, 535, 643, 830, 845
Kpn2I TCCGGA 1 cut(s) 646
Kzo9I GATC 4 cut(s) 21, 451, 667, 694
LmnI GCTCC 3 cut(s) 140, 237, 370
LweI GCATC 1 cut(s) 604
MaeI CTAG 1 cut(s) 707
MaeII ACGT 2 cut(s) 306, 333
MaeIII GTNAC 3 cut(s) 293, 500, 558
MalI GATC 4 cut(s) 23, 453, 669, 696
MboI GATC 4 cut(s) 21, 451, 667, 694
MboII GAAGA 5 cut(s) 43, 52, 583, 629, 838
MflI RGATCY 1 cut(s) 694
MhlI GDGCHC 3 cut(s) 137, 375, 414
MluCI AATT 1 cut(s) 47
MlyI GAGTC 1 cut(s) 392
MmeI TCCRAC 2 cut(s) 559, 642
MroI TCCGGA 1 cut(s) 646
MspI CCGG 9 cut(s) 145, 176, 358, 368, 510, 564, 647, 683, 738
MspR9I CCNGG 5 cut(s) 190, 368, 511, 564, 739
MvaI CCWGG 1 cut(s) 190
MwoI GCNNNNNNNGC 1 cut(s) 431
NciI CCSGG 4 cut(s) 368, 511, 564, 739
NcoI CCATGG 1 cut(s) 289
NdeII GATC 4 cut(s) 21, 451, 667, 694
NlaIII CATG 9 cut(s) 100, 202, 293, 390, 473, 535, 643, 830, 845
NlaIV GGNNCC 1 cut(s) 6
NmeAIII GCCGAG 1 cut(s) 164
NmuCI GTSAC 1 cut(s) 500
NspI RCATGY 3 cut(s) 390, 643, 845
PaeI GCATGC 1 cut(s) 390
PciI ACATGT 2 cut(s) 639, 841
PcsI WCGNNNNNNNCGW 1 cut(s) 339
PfeI GAWTC 1 cut(s) 866
PinAI ACCGGT 1 cut(s) 175
PleI GAGTC 1 cut(s) 392
PpsI GAGTC 1 cut(s) 392
Ppu21I YACGTR 1 cut(s) 307
PscI ACATGT 2 cut(s) 639, 841
Psp124BI GAGCTC 1 cut(s) 137
Psp6I CCWGG 1 cut(s) 188
PspEI GGTNACC 2 cut(s) 293, 558
PspGI CCWGG 1 cut(s) 188
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 2 cut(s) 147, 446
PsuI RGATCY 1 cut(s) 694
RsaI GTAC 2 cut(s) 613, 638
RsaNI GTAC 2 cut(s) 612, 637
SacI GAGCTC 1 cut(s) 137
Sau3AI GATC 4 cut(s) 21, 451, 667, 694
Sau96I GGNCC 2 cut(s) 147, 446
SchI GAGTC 1 cut(s) 392
ScrFI CCNGG 5 cut(s) 190, 368, 511, 564, 739
SduI GDGCHC 3 cut(s) 137, 375, 414
SetI ASST 9 cut(s) 95, 137, 234, 309, 331, 336, 551, 880, 899
SfaNI GCATC 1 cut(s) 604
SinI GGWCC 1 cut(s) 147
SphI GCATGC 1 cut(s) 390
Sse9I AATT 1 cut(s) 47
SsiI CCGC 6 cut(s) 261, 279, 384, 407, 497, 657
SspI AATATT 1 cut(s) 520
SspMI CTAG 1 cut(s) 707
SstI GAGCTC 1 cut(s) 137
StyD4I CCNGG 5 cut(s) 188, 366, 509, 562, 737
StyI CCWWGG 1 cut(s) 289
TaaI ACNGT 3 cut(s) 257, 506, 811
TaiI ACGT 2 cut(s) 309, 336
TasI AATT 1 cut(s) 47
TatI WGTACW 1 cut(s) 636
TfiI GAWTC 1 cut(s) 866
TscAI CASTG 3 cut(s) 34, 145, 511
TseFI GTSAC 1 cut(s) 500
Tsp45I GTSAC 1 cut(s) 500
TspDTI ATGAA 5 cut(s) 85, 187, 872, 898, 905
TspGWI ACGGA 2 cut(s) 444, 629
TspRI CASTG 3 cut(s) 34, 145, 511
VpaK11BI GGWCC 1 cut(s) 147
XceI RCATGY 3 cut(s) 390, 643, 845
XmiI GTMKAC 1 cut(s) 246
XspI CTAG 1 cut(s) 707
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.