Rmu_sc0008229.1_g000008

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008229.1
OG0017980
Physical Location & Seq
Reverse (-)
19761 .. 20687
927 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008229.1_g000008.1.cds

Sequence Viewer

Length: 927 bp
atggaacccccacacccaccgatcatcactgatgatgtagcccatcaattcttccccttcttcaaagtttacaaagacggtcgtgtagagaggttcatgccttctgagaaacaccctccctgtgatgacccaaactccagtgtccggtccaaagatgtcgtcatctcctccgaaccggttgtctcggccagggttttcatgccccgaatacccagcaacccggaaaagaagctccctctcgtggtttacattcacggcggtgggttctcaatagcctccgctttccactcgggttaccacaaatacgtgtcctcccttgtcgccgaagccaacgtcatagccgtctccgtcgactaccggcttgccccggagcacccaatacccgcatgctacgatgactcgtgggcggtgctcaaatgggtggcttcccatgcaaatagggatggccctgatccatggctgaacagccatgcagatttgggtagggtctttttggcgggtgacagtgccggggcgaatatttcccacaacatgatatctcgggtcgggtcaactgggttacccggagtgaagatagtaggagtggctttggtgcatccttactttggcggtacggaagatgataaaatgtggctgtacatgtgtccggagaatggcgggttggatgatccgaggctgaaaccggccgtagaggatctgagaaagctagagtgtgagagggttttggtgtttgtggccgggaaagaccatttgagggagagagggacttgttatgttgaggctttgaagggaagtgggtggaaagggatggtggagattgtagagcatgaggaggagaggcatgtcttccatctgatgaagcctgaaactgagaaagctgtggatttgatgaataggttggtctccttcatcaatcaagcagagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_3

Protein Analysis

308

Amino Acids

34.27

Weight (kDa)

5.92

Isoelectric Point (pI)

38.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017980)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g06540
rosa_chinensis RchiOBHm_Chr6g0258461
rosa_laevigata RLG00000014610 RLG00000014611
rosa_multiflora Rmu_sc0008229.1_g000008 Rmu_sc0008229.1_g000010
rosa_roxburghii Rroxscaffold_178G00437460 Rroxscaffold_7G00205710
rosa_rugosa Rorug05G0581800
rosa_samantha Rh6CG086700
rosa_wichuraiana Rw6G008510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 351
AccIII TCCGGA 1 cut(s) 646
AciI CCGC 7 cut(s) 258, 279, 384, 407, 497, 609, 657
AclWI GGATC 3 cut(s) 446, 662, 702
AcoI YGGCCR 3 cut(s) 186, 684, 735
AfaI GTAC 2 cut(s) 613, 638
AfiI CCNNNNNNNGG 5 cut(s) 144, 241, 605, 653, 754
AflIII ACRYGT 2 cut(s) 306, 639
AgeI ACCGGT 1 cut(s) 175
AgsI TTSAA 2 cut(s) 64, 787
AjnI CCWGG 1 cut(s) 188
AjuI GAANNNNNNNTTGG 2 cut(s) 644, 676
AleI CACNNNNGTG 1 cut(s) 258
AluBI AGCT 3 cut(s) 232, 706, 878
AluI AGCT 3 cut(s) 232, 706, 878
Alw21I GWGCWC 2 cut(s) 375, 414
Alw26I GTCTC 3 cut(s) 187, 349, 907
AlwI GGATC 3 cut(s) 446, 662, 702
Ama87I CYCGRG 2 cut(s) 289, 540
Aor13HI TCCGGA 1 cut(s) 646
AoxI GGCC 4 cut(s) 186, 445, 684, 735
ArsI GACNNNNNNTTYG 6 cut(s) 144, 165, 176, 197, 318, 350
AsiGI ACCGGT 1 cut(s) 175
AspS9I GGNCC 2 cut(s) 147, 446
AsuC2I CCSGG 5 cut(s) 221, 368, 511, 564, 739
AsuHPI GGTGA 1 cut(s) 512
AvaI CYCGRG 2 cut(s) 289, 540
AvaII GGWCC 1 cut(s) 147
BauI CACGAG 2 cut(s) 239, 400
BbsI GAAGAC 1 cut(s) 838
Bbv12I GWGCWC 2 cut(s) 375, 414
BccI CCATC 4 cut(s) 51, 437, 802, 858
BceAI ACGGC 3 cut(s) 271, 326, 671
BciT130I CCWGG 1 cut(s) 190
BcnI CCSGG 5 cut(s) 221, 368, 511, 564, 739
BcoDI GTCTC 3 cut(s) 187, 349, 907
BfaI CTAG 1 cut(s) 707
Bme1390I CCNGG 6 cut(s) 190, 221, 368, 511, 564, 739
Bme18I GGWCC 1 cut(s) 147
BmeT110I CYCGRG 2 cut(s) 289, 540
BmgT120I GGNCC 2 cut(s) 147, 446
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 6 cut(s) 190, 221, 368, 511, 564, 739
BmrI ACTGGG 1 cut(s) 564
BmsI GCATC 1 cut(s) 604
BmuI ACTGGG 1 cut(s) 564
BpiI GAAGAC 1 cut(s) 838
BpmI CTGGAG 1 cut(s) 121
BpuMI CCSGG 5 cut(s) 221, 368, 511, 564, 739
BsaAI YACGTR 1 cut(s) 307
BsaI GGTCTC 1 cut(s) 907
BsaJI CCNNGG 5 cut(s) 189, 366, 455, 510, 671
BsaWI WCCGGW 3 cut(s) 144, 175, 646
BsaXI ACNNNNNCTCC 4 cut(s) 119, 149, 296, 326
Bsc4I CCNNNNNNNGG 5 cut(s) 144, 241, 605, 653, 754
Bse118I RCCGGY 3 cut(s) 175, 357, 682
Bse1I ACTGG 2 cut(s) 138, 559
BseAI TCCGGA 1 cut(s) 646
BseBI CCWGG 1 cut(s) 190
BseDI CCNNGG 5 cut(s) 189, 366, 455, 510, 671
BseGI GGATG 4 cut(s) 448, 595, 670, 813
BseLI CCNNNNNNNGG 5 cut(s) 144, 241, 605, 653, 754
BseMII CTCAG 3 cut(s) 96, 689, 861
BseNI ACTGG 2 cut(s) 138, 559
BseRI GAGGAG 3 cut(s) 157, 845, 848
BseX3I CGGCCG 1 cut(s) 684
BseYI CCCAGC 1 cut(s) 212
Bsh1285I CGRYCG 2 cut(s) 82, 687
BshFI GGCC 4 cut(s) 188, 447, 686, 737
BshTI ACCGGT 1 cut(s) 175
BsiEI CGRYCG 2 cut(s) 82, 687
BsiHKAI GWGCWC 2 cut(s) 375, 414
BsiHKCI CYCGRG 2 cut(s) 289, 540
BslFI GGGAC 1 cut(s) 778
BslI CCNNNNNNNGG 5 cut(s) 144, 241, 605, 653, 754
BsmAI GTCTC 3 cut(s) 187, 349, 907
BsmBI CGTCTC 1 cut(s) 349
BsmFI GGGAC 1 cut(s) 778
BsnI GGCC 4 cut(s) 188, 447, 686, 737
Bso31I GGTCTC 1 cut(s) 907
BsoBI CYCGRG 2 cut(s) 289, 540
Bsp1286I GDGCHC 2 cut(s) 375, 414
Bsp13I TCCGGA 1 cut(s) 646
Bsp1407I TGTACA 1 cut(s) 636
Bsp143I GATC 4 cut(s) 21, 451, 667, 694
Bsp19I CCATGG 1 cut(s) 455
BspACI CCGC 7 cut(s) 258, 279, 384, 407, 497, 609, 657
BspANI GGCC 4 cut(s) 188, 447, 686, 737
BspCNI CTCAG 3 cut(s) 97, 690, 862
BspEI TCCGGA 1 cut(s) 646
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 3 cut(s) 446, 662, 702
BspTNI GGTCTC 1 cut(s) 907
BsrFI RCCGGY 3 cut(s) 175, 357, 682
BsrGI TGTACA 1 cut(s) 636
BsrI ACTGG 2 cut(s) 138, 559
BssAI RCCGGY 3 cut(s) 175, 357, 682
BssECI CCNNGG 5 cut(s) 189, 366, 455, 510, 671
BssMI GATC 4 cut(s) 21, 451, 667, 694
BssSI CACGAG 2 cut(s) 239, 400
BssT1I CCWWGG 1 cut(s) 455
Bst2BI CACGAG 2 cut(s) 239, 400
Bst2UI CCWGG 1 cut(s) 190
Bst4CI ACNGT 2 cut(s) 80, 506
BstAUI TGTACA 1 cut(s) 636
BstBAI YACGTR 1 cut(s) 307
BstC8I GCNNGC 2 cut(s) 363, 388
BstDEI CTNAG 3 cut(s) 105, 698, 870
BstDSI CCRYGG 1 cut(s) 455
BstEII GGTNACC 2 cut(s) 293, 558
BstF5I GGATG 4 cut(s) 448, 595, 670, 813
BstKTI GATC 4 cut(s) 24, 454, 670, 697
BstMAI GTCTC 3 cut(s) 187, 349, 907
BstMBI GATC 4 cut(s) 21, 451, 667, 694
BstMCI CGRYCG 2 cut(s) 82, 687
BstMWI GCNNNNNNNGC 1 cut(s) 431
BstNI CCWGG 1 cut(s) 190
BstNSI RCATGY 3 cut(s) 390, 643, 845
BstPI GGTNACC 2 cut(s) 293, 558
BstSCI CCNGG 6 cut(s) 188, 219, 366, 509, 562, 737
BstV2I GAAGAC 1 cut(s) 838
BstX2I RGATCY 1 cut(s) 694
BstYI RGATCY 1 cut(s) 694
BstZI CGGCCG 1 cut(s) 684
BsuRI GGCC 4 cut(s) 188, 447, 686, 737
BtgI CCRYGG 1 cut(s) 455
BtsCI GGATG 4 cut(s) 448, 595, 670, 813
BtsIMutI CAGTG 3 cut(s) 27, 145, 511
Cac8I GCNNGC 2 cut(s) 363, 388
Cfr10I RCCGGY 3 cut(s) 175, 357, 682
Cfr13I GGNCC 2 cut(s) 147, 446
Csp6I GTAC 2 cut(s) 612, 637
CspAI ACCGGT 1 cut(s) 175
CviQI GTAC 2 cut(s) 612, 637
DdeI CTNAG 3 cut(s) 105, 698, 870
DpnI GATC 4 cut(s) 23, 453, 669, 696
DpnII GATC 4 cut(s) 21, 451, 667, 694
EaeI YGGCCR 3 cut(s) 186, 684, 735
EagI CGGCCG 1 cut(s) 684
EclXI CGGCCG 1 cut(s) 684
Eco130I CCWWGG 1 cut(s) 455
Eco31I GGTCTC 1 cut(s) 907
Eco32I GATATC 1 cut(s) 537
Eco47I GGWCC 1 cut(s) 147
Eco52I CGGCCG 1 cut(s) 684
Eco88I CYCGRG 2 cut(s) 289, 540
Eco91I GGTNACC 2 cut(s) 293, 558
EcoO65I GGTNACC 2 cut(s) 293, 558
EcoRII CCWGG 1 cut(s) 188
EcoRV GATATC 1 cut(s) 537
EcoT14I CCWWGG 1 cut(s) 455
ErhI CCWWGG 1 cut(s) 455
Esp3I CGTCTC 1 cut(s) 349
FaqI GGGAC 1 cut(s) 778
FauI CCCGC 3 cut(s) 391, 490, 650
FblI GTMKAC 1 cut(s) 351
FokI GGATG 4 cut(s) 455, 582, 677, 820
FspBI CTAG 1 cut(s) 707
GsaI CCCAGC 1 cut(s) 216
GsuI CTGGAG 1 cut(s) 121
HaeIII GGCC 4 cut(s) 188, 447, 686, 737
HincII GTYRAC 2 cut(s) 352, 552
HindII GTYRAC 2 cut(s) 352, 552
HinfI GANTC 1 cut(s) 398
HphI GGTGA 1 cut(s) 512
Hpy166II GTNNAC 4 cut(s) 70, 247, 352, 552
Hpy188I TCNGA 5 cut(s) 106, 172, 672, 699, 855
Hpy188III TCNNGA 1 cut(s) 647
Hpy8I GTNNAC 4 cut(s) 70, 247, 352, 552
Hpy99I CGWCG 1 cut(s) 353
HpyAV CCTTC 4 cut(s) 67, 111, 781, 916
HpyCH4III ACNGT 2 cut(s) 80, 506
HpyCH4IV ACGT 2 cut(s) 306, 333
HpyCH4V TGCA 3 cut(s) 434, 473, 595
HpyF10VI GCNNNNNNNGC 1 cut(s) 431
HpyF3I CTNAG 3 cut(s) 105, 698, 870
HpySE526I ACGT 2 cut(s) 306, 333
Kpn2I TCCGGA 1 cut(s) 646
Kzo9I GATC 4 cut(s) 21, 451, 667, 694
LmnI GCTCC 2 cut(s) 237, 370
LweI GCATC 1 cut(s) 604
MaeI CTAG 1 cut(s) 707
MaeII ACGT 2 cut(s) 306, 333
MaeIII GTNAC 3 cut(s) 293, 500, 558
MalI GATC 4 cut(s) 23, 453, 669, 696
MboI GATC 4 cut(s) 21, 451, 667, 694
MboII GAAGA 5 cut(s) 43, 52, 583, 629, 838
MflI RGATCY 1 cut(s) 694
MhlI GDGCHC 2 cut(s) 375, 414
MluCI AATT 1 cut(s) 47
MlyI GAGTC 1 cut(s) 392
MmeI TCCRAC 1 cut(s) 642
MroI TCCGGA 1 cut(s) 646
MslI CAYNNNNRTG 1 cut(s) 258
MspR9I CCNGG 6 cut(s) 190, 221, 368, 511, 564, 739
MvaI CCWGG 1 cut(s) 190
MwoI GCNNNNNNNGC 1 cut(s) 431
NciI CCSGG 5 cut(s) 221, 368, 511, 564, 739
NcoI CCATGG 1 cut(s) 455
NdeII GATC 4 cut(s) 21, 451, 667, 694
NlaIV GGNNCC 1 cut(s) 6
NmeAIII GCCGAG 1 cut(s) 164
NmuCI GTSAC 1 cut(s) 500
NspI RCATGY 3 cut(s) 390, 643, 845
OliI CACNNNNGTG 1 cut(s) 258
PaeI GCATGC 1 cut(s) 390
PciI ACATGT 1 cut(s) 639
PcsI WCGNNNNNNNCGW 1 cut(s) 339
PinAI ACCGGT 1 cut(s) 175
PleI GAGTC 1 cut(s) 392
PpsI GAGTC 1 cut(s) 392
Ppu21I YACGTR 1 cut(s) 307
PscI ACATGT 1 cut(s) 639
Psp6I CCWGG 1 cut(s) 188
PspEI GGTNACC 2 cut(s) 293, 558
PspFI CCCAGC 1 cut(s) 212
PspGI CCWGG 1 cut(s) 188
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 2 cut(s) 147, 446
PsuI RGATCY 1 cut(s) 694
RsaI GTAC 2 cut(s) 613, 638
RsaNI GTAC 2 cut(s) 612, 637
RseI CAYNNNNRTG 1 cut(s) 258
SalI GTCGAC 1 cut(s) 350
Sau3AI GATC 4 cut(s) 21, 451, 667, 694
Sau96I GGNCC 2 cut(s) 147, 446
SchI GAGTC 1 cut(s) 392
ScrFI CCNGG 6 cut(s) 190, 221, 368, 511, 564, 739
SduI GDGCHC 2 cut(s) 375, 414
SetI ASST 7 cut(s) 95, 234, 309, 336, 708, 880, 899
SfaNI GCATC 1 cut(s) 604
SinI GGWCC 1 cut(s) 147
SmiMI CAYNNNNRTG 1 cut(s) 258
SphI GCATGC 1 cut(s) 390
Sse9I AATT 1 cut(s) 47
SsiI CCGC 7 cut(s) 258, 279, 384, 407, 497, 609, 657
SspI AATATT 1 cut(s) 520
SspMI CTAG 1 cut(s) 707
StyD4I CCNGG 6 cut(s) 188, 219, 366, 509, 562, 737
StyI CCWWGG 1 cut(s) 455
TaaI ACNGT 2 cut(s) 80, 506
TaiI ACGT 2 cut(s) 309, 336
TaqI TCGA 1 cut(s) 351
TasI AATT 1 cut(s) 47
TatI WGTACW 1 cut(s) 636
TscAI CASTG 3 cut(s) 34, 145, 511
TseFI GTSAC 1 cut(s) 500
Tsp45I GTSAC 1 cut(s) 500
TspDTI ATGAA 5 cut(s) 85, 187, 872, 898, 905
TspGWI ACGGA 2 cut(s) 337, 629
TspRI CASTG 3 cut(s) 34, 145, 511
VpaK11BI GGWCC 1 cut(s) 147
XceI RCATGY 3 cut(s) 390, 643, 845
XmiI GTMKAC 1 cut(s) 351
XspI CTAG 1 cut(s) 707
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.