Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0020359

Physical Location & Seq

Genomic Coordinates Forward (+)

23098177 .. 23099330

Gene Structure 1154 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGCATTCCCCATTGTATAAGAGCTACAACTATCACTACATGGAAGGAGAAAGCATGAGAGTGATGTTTGAGCCATGGATTGTACAATACAAAGTTGACATGGTATTTTCTGGTCATGTCCATGCCTATGAACAATCTGAACGCAATTGCATTCCTGTGAAAGATCAATCTGCACCTGTGTACATTACCATTGGGGATGGAGGAAATCTTGAAGGCTTGGCAACCTCCCACAGCCAGCGTACTCGATCGGCCTATCGAGAGGCCAGTTTTGGTCATGCCATTTTTGACATCAAGAACCGAAGCCATGCTTATTTTAGTTGGCATCGTAATCAAGATGGATATGCTATAGAAGCTGATTCTATGGTGTTCTTGAATAGATACTTTCATCCTCTTGATGATTCCATAAGTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0005488 GO:0005506 GO:0005575 GO:0005576 GO:0005615 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006793 GO:0006796 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008199 GO:0008270 GO:0009267 GO:0009505 GO:0009506 GO:0009605 GO:0009987 GO:0009991 GO:0016036 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0030054 GO:0030145 GO:0030312 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042578 GO:0042594 GO:0043167 GO:0043169 GO:0044237 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0051716 GO:0055044 GO:0071496 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos Metallophos_C Pur_ac_phosph_N

Protein Analysis

137

Amino Acids

15.91

Weight (kDa)

6.1

Isoelectric Point (pI)

52.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Metallophos_C	PF14008	58 - 113	1.5e-16	Iron/zinc purple acid phosphatase-like protein C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0020359)

Species	Orthologous Gene IDs
malus_domestica	MD06G1221700.v1.1 MD15G1020400.v1.1
rosa_chinensis	RchiOBHm_Chr6g0266601
rosa_laevigata	RLG00000014101
rosa_multiflora	Rmu_sc0002769.1_g000001
rosa_roxburghii	Rroxscaffold_7G00201730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	3 cut(s)	84, 182, 241
AgsI	TTSAA	2 cut(s)	212, 373
AluBI	AGCT	2 cut(s)	24, 353
AluI	AGCT	2 cut(s)	24, 353
AoxI	GGCC	2 cut(s)	249, 261
BccI	CCATC	2 cut(s)	191, 329
BfmI	CTRYAG	1 cut(s)	345
BmsI	GCATC	1 cut(s)	331
BsaJI	CCNNGG	1 cut(s)	74
Bse1I	ACTGG	1 cut(s)	264
BseDI	CCNNGG	1 cut(s)	74
BseGI	GGATG	2 cut(s)	202, 385
BseNI	ACTGG	1 cut(s)	264
BsgI	GTGCAG	1 cut(s)	156
Bsh1285I	CGRYCG	1 cut(s)	248
BshFI	GGCC	2 cut(s)	251, 263
BsiEI	CGRYCG	1 cut(s)	248
BsmI	GAATGC	2 cut(s)	4, 150
BsnI	GGCC	2 cut(s)	251, 263
Bsp1407I	TGTACA	2 cut(s)	82, 180
Bsp143I	GATC	2 cut(s)	163, 245
Bsp19I	CCATGG	1 cut(s)	74
BspANI	GGCC	2 cut(s)	251, 263
BsrGI	TGTACA	2 cut(s)	82, 180
BsrI	ACTGG	1 cut(s)	264
BssECI	CCNNGG	1 cut(s)	74
BssMI	GATC	2 cut(s)	163, 245
BssT1I	CCWWGG	1 cut(s)	74
BstAUI	TGTACA	2 cut(s)	82, 180
BstC8I	GCNNGC	1 cut(s)	236
BstDSI	CCRYGG	1 cut(s)	74
BstF5I	GGATG	2 cut(s)	202, 385
BstKTI	GATC	2 cut(s)	166, 248
BstMBI	GATC	2 cut(s)	163, 245
BstMCI	CGRYCG	1 cut(s)	248
BstMWI	GCNNNNNNNGC	1 cut(s)	350
BstSFI	CTRYAG	1 cut(s)	345
BsuRI	GGCC	2 cut(s)	251, 263
BtgI	CCRYGG	1 cut(s)	74
BtsCI	GGATG	2 cut(s)	202, 385
Cac8I	GCNNGC	1 cut(s)	236
Csp6I	GTAC	3 cut(s)	83, 181, 240
CviAII	CATG	8 cut(s)	40, 55, 75, 100, 116, 122, 275, 305
CviJI	RGCY	8 cut(s)	24, 73, 216, 234, 251, 263, 303, 353
CviKI_1	RGCY	8 cut(s)	24, 73, 216, 234, 251, 263, 303, 353
CviQI	GTAC	3 cut(s)	83, 181, 240
DpnI	GATC	2 cut(s)	165, 247
DpnII	GATC	2 cut(s)	163, 245
Eco130I	CCWWGG	1 cut(s)	74
EcoT14I	CCWWGG	1 cut(s)	74
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	74
FaeI	CATG	8 cut(s)	43, 58, 78, 103, 119, 125, 278, 308
FalI	AAGNNNNNCTT	2 cut(s)	292, 324
FatI	CATG	8 cut(s)	39, 54, 74, 99, 115, 121, 274, 304
FokI	GGATG	2 cut(s)	209, 372
HaeIII	GGCC	2 cut(s)	251, 263
Hin1II	CATG	8 cut(s)	43, 58, 78, 103, 119, 125, 278, 308
HincII	GTYRAC	1 cut(s)	97
HindII	GTYRAC	1 cut(s)	97
HinfI	GANTC	2 cut(s)	356, 398
Hpy166II	GTNNAC	2 cut(s)	97, 181
Hpy188I	TCNGA	1 cut(s)	139
Hpy188III	TCNNGA	6 cut(s)	209, 257, 292, 332, 370, 392
Hpy8I	GTNNAC	2 cut(s)	97, 181
HpyAV	CCTTC	2 cut(s)	38, 206
HpyCH4V	TGCA	3 cut(s)	4, 150, 173
HpyF10VI	GCNNNNNNNGC	1 cut(s)	350
Hsp92II	CATG	8 cut(s)	43, 58, 78, 103, 119, 125, 278, 308
Kzo9I	GATC	2 cut(s)	163, 245
LpnPI	CCDG	5 cut(s)	96, 168, 189, 248, 277
LweI	GCATC	1 cut(s)	331
MalI	GATC	2 cut(s)	165, 247
MboI	GATC	2 cut(s)	163, 245
MfeI	CAATTG	1 cut(s)	145
MluCI	AATT	1 cut(s)	145
MnlI	CCTC	4 cut(s)	194, 235, 253, 399
Mph1103I	ATGCAT	1 cut(s)	6
MslI	CAYNNNNRTG	4 cut(s)	59, 120, 126, 155
MunI	CAATTG	1 cut(s)	145
Mva1269I	GAATGC	2 cut(s)	4, 150
MwoI	GCNNNNNNNGC	1 cut(s)	350
NcoI	CCATGG	1 cut(s)	74
NdeII	GATC	2 cut(s)	163, 245
NlaIII	CATG	8 cut(s)	43, 58, 78, 103, 119, 125, 278, 308
NsiI	ATGCAT	1 cut(s)	6
PctI	GAATGC	2 cut(s)	4, 150
PfeI	GAWTC	2 cut(s)	356, 398
Ple19I	CGATCG	1 cut(s)	248
PvuI	CGATCG	1 cut(s)	248
RsaI	GTAC	3 cut(s)	84, 182, 241
RsaNI	GTAC	3 cut(s)	83, 181, 240
RseI	CAYNNNNRTG	4 cut(s)	59, 120, 126, 155
Sau3AI	GATC	2 cut(s)	163, 245
SetI	ASST	4 cut(s)	26, 178, 227, 355
SfaNI	GCATC	1 cut(s)	331
SfcI	CTRYAG	1 cut(s)	345
SmiMI	CAYNNNNRTG	4 cut(s)	59, 120, 126, 155
Sse9I	AATT	1 cut(s)	145
StyI	CCWWGG	1 cut(s)	74
TaqI	TCGA	2 cut(s)	244, 256
TasI	AATT	1 cut(s)	145
TatI	WGTACW	2 cut(s)	82, 180
TfiI	GAWTC	2 cut(s)	356, 398
TspDTI	ATGAA	2 cut(s)	144, 374
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.