RchiOBHm_Chr6g0266741

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Forward (+)
23232902 .. 23233227
326 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 255 bp
ATGTTTGCGCTGGTGGAGATGTGGAGTAATGAGACCAAGGAGCAGAGCCAGAAGGATCAAACGATTCAAACCCTTTCGGCGAATGCCTCGGCCTCATCAAGCACTGATGTTGTGGTCAACCAAGCAAAAGGAGAAATGAGCTCGTCAACTTTGTTAGCTCTTGTTTTCAGCCGAGTCGTGCGTGTCAACTCTCTTTTAACACACTATTTGTCTGAAGCCTCAGTTTCCATGCTTGTGGATTGGTTTAGCTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

84

Amino Acids

9.21

Weight (kDa)

4.79

Isoelectric Point (pI)

41.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020411)

Species Orthologous Gene IDs
prunus_persica Prupe.8G112400_v2.0.a1
pyrus_communis pycom10g06860
rosa_chinensis RchiOBHm_Chr6g0260801 RchiOBHm_Chr6g0266741
rosa_rugosa Rorug02G0250700
rosa_samantha Rh6AG110200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 63
AcuI CTGAAG 1 cut(s) 234
AgsI TTSAA 1 cut(s) 68
AluBI AGCT 3 cut(s) 141, 158, 249
AluI AGCT 3 cut(s) 141, 158, 249
Alw21I GWGCWC 1 cut(s) 143
Alw26I GTCTC 1 cut(s) 26
AlwI GGATC 1 cut(s) 63
AoxI GGCC 1 cut(s) 90
AspLEI GCGC 1 cut(s) 10
BanII GRGCYC 1 cut(s) 143
Bbv12I GWGCWC 1 cut(s) 143
BcoDI GTCTC 1 cut(s) 26
BsaI GGTCTC 1 cut(s) 26
BsaJI CCNNGG 2 cut(s) 36, 87
BseDI CCNNGG 2 cut(s) 36, 87
BseMII CTCAG 1 cut(s) 234
BshFI GGCC 1 cut(s) 92
BsiHKAI GWGCWC 1 cut(s) 143
BsmAI GTCTC 1 cut(s) 26
BsmI GAATGC 1 cut(s) 88
BsnI GGCC 1 cut(s) 92
Bso31I GGTCTC 1 cut(s) 26
Bsp1286I GDGCHC 1 cut(s) 143
Bsp143I GATC 1 cut(s) 55
BspANI GGCC 1 cut(s) 92
BspCNI CTCAG 1 cut(s) 233
BspPI GGATC 1 cut(s) 63
BspTNI GGTCTC 1 cut(s) 26
BssECI CCNNGG 2 cut(s) 36, 87
BssMI GATC 1 cut(s) 55
BssT1I CCWWGG 1 cut(s) 36
BstDEI CTNAG 1 cut(s) 220
BstHHI GCGC 1 cut(s) 10
BstKTI GATC 1 cut(s) 58
BstMAI GTCTC 1 cut(s) 26
BstMBI GATC 1 cut(s) 55
BstXI CCANNNNNNTGG 1 cut(s) 235
BsuRI GGCC 1 cut(s) 92
BtsIMutI CAGTG 1 cut(s) 102
CfoI GCGC 1 cut(s) 10
CviAII CATG 1 cut(s) 229
CviJI RGCY 7 cut(s) 48, 92, 141, 158, 171, 218, 249
CviKI_1 RGCY 7 cut(s) 48, 92, 141, 158, 171, 218, 249
DdeI CTNAG 1 cut(s) 220
DpnI GATC 1 cut(s) 57
DpnII GATC 1 cut(s) 55
Ecl136II GAGCTC 1 cut(s) 141
Eco130I CCWWGG 1 cut(s) 36
Eco24I GRGCYC 1 cut(s) 143
Eco31I GGTCTC 1 cut(s) 26
Eco53kI GAGCTC 1 cut(s) 141
Eco57I CTGAAG 1 cut(s) 234
EcoICRI GAGCTC 1 cut(s) 141
EcoT14I CCWWGG 1 cut(s) 36
EcoT38I GRGCYC 1 cut(s) 143
ErhI CCWWGG 1 cut(s) 36
FaeI CATG 1 cut(s) 232
FaiI YATR 1 cut(s) 230
FatI CATG 1 cut(s) 228
FriOI GRGCYC 1 cut(s) 143
GlaI GCGC 1 cut(s) 9
HaeIII GGCC 1 cut(s) 92
HhaI GCGC 1 cut(s) 10
Hin1II CATG 1 cut(s) 232
Hin6I GCGC 1 cut(s) 8
HinP1I GCGC 1 cut(s) 8
HincII GTYRAC 3 cut(s) 118, 147, 187
HindII GTYRAC 3 cut(s) 118, 147, 187
HinfI GANTC 2 cut(s) 64, 174
Hpy166II GTNNAC 3 cut(s) 118, 147, 187
Hpy188I TCNGA 1 cut(s) 214
Hpy188III TCNNGA 1 cut(s) 252
Hpy8I GTNNAC 3 cut(s) 118, 147, 187
HpyAV CCTTC 1 cut(s) 46
HpyF3I CTNAG 1 cut(s) 220
Hsp92II CATG 1 cut(s) 232
HspAI GCGC 1 cut(s) 8
Kzo9I GATC 1 cut(s) 55
LmnI GCTCC 2 cut(s) 40, 254
LpnPI CCDG 1 cut(s) 62
MalI GATC 1 cut(s) 57
MboI GATC 1 cut(s) 55
MhlI GDGCHC 1 cut(s) 143
MlyI GAGTC 1 cut(s) 183
MnlI CCTC 3 cut(s) 97, 103, 229
MseI TTAA 1 cut(s) 197
MslI CAYNNNNRTG 1 cut(s) 233
Mva1269I GAATGC 1 cut(s) 88
NdeII GATC 1 cut(s) 55
NlaIII CATG 1 cut(s) 232
NmeAIII GCCGAG 2 cut(s) 68, 197
PctI GAATGC 1 cut(s) 88
PfeI GAWTC 1 cut(s) 64
PleI GAGTC 1 cut(s) 182
PpsI GAGTC 1 cut(s) 182
Psp124BI GAGCTC 1 cut(s) 143
RseI CAYNNNNRTG 1 cut(s) 233
SacI GAGCTC 1 cut(s) 143
SaqAI TTAA 1 cut(s) 197
Sau3AI GATC 1 cut(s) 55
SchI GAGTC 1 cut(s) 183
SduI GDGCHC 1 cut(s) 143
SetI ASST 3 cut(s) 143, 160, 251
SmiMI CAYNNNNRTG 1 cut(s) 233
SstI GAGCTC 1 cut(s) 143
StyI CCWWGG 1 cut(s) 36
TfiI GAWTC 1 cut(s) 64
Tru1I TTAA 1 cut(s) 197
Tru9I TTAA 1 cut(s) 197
TscAI CASTG 1 cut(s) 109
TspRI CASTG 1 cut(s) 109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.