RchiOBHm_Chr6g0269811

calcineurin b-like protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Forward (+)
27307849 .. 27309467
1619 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 300 bp
ATGGGCTTATACACAAGGTGTGTGCTTCCTCCTATTCTTGGAGTGGATTTGGAAAAGGTGGCAGAAATGGCAATGACATCATCCGCTTTGAAAGAGGAAGAGCTCAAGCTTGCTGTGTTTCAAAATAGCAGTAAGCAGAGCCTCTTTTTTGACAGGATATTCATGGATGCATATGGAAAAGCAGATGACAGGATTGATGAAGAAGAGTGGAAGGAATACGTCACACAAAACCCTTCTCTACTGGAAAACATGATTCTTCCATACTTGATGTATGTCCTAACCCCCAAGTCTACTTTCTGA

Protein Analysis

99

Amino Acids

11.44

Weight (kDa)

4.54

Isoelectric Point (pI)

37.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020380)

Species Orthologous Gene IDs
malus_domestica MD01G1081100.v1.1
rosa_chinensis RchiOBHm_Chr6g0269811
rosa_roxburghii Rroxscaffold_4G00314510
rosa_rugosa Rorug06G0050600
rosa_samantha Rh6CG169500 Rh6DG161300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 290
AciI CCGC 1 cut(s) 84
AdeI CACNNNGTG 1 cut(s) 18
AfiI CCNNNNNNNGG 1 cut(s) 38
AgsI TTSAA 2 cut(s) 91, 122
AjuI GAANNNNNNNTTGG 1 cut(s) 278
AluBI AGCT 2 cut(s) 103, 109
AluI AGCT 2 cut(s) 103, 109
Alw21I GWGCWC 1 cut(s) 105
BanII GRGCYC 1 cut(s) 105
Bbv12I GWGCWC 1 cut(s) 105
BmsI GCATC 1 cut(s) 157
BpuEI CTTGAG 1 cut(s) 89
Bsc4I CCNNNNNNNGG 1 cut(s) 38
Bse1I ACTGG 1 cut(s) 246
Bse3DI GCAATG 1 cut(s) 78
BseGI GGATG 2 cut(s) 80, 172
BseLI CCNNNNNNNGG 1 cut(s) 38
BseMI GCAATG 1 cut(s) 78
BseNI ACTGG 1 cut(s) 246
BsiHKAI GWGCWC 1 cut(s) 105
BslI CCNNNNNNNGG 1 cut(s) 38
Bsp1286I GDGCHC 1 cut(s) 105
BspACI CCGC 1 cut(s) 84
BspQI GCTCTTC 1 cut(s) 93
BsrDI GCAATG 1 cut(s) 78
BsrI ACTGG 1 cut(s) 246
Bst6I CTCTTC 2 cut(s) 93, 198
BstC8I GCNNGC 1 cut(s) 111
BstF5I GGATG 2 cut(s) 80, 172
BstMWI GCNNNNNNNGC 1 cut(s) 68
BtsCI GGATG 2 cut(s) 80, 172
Cac8I GCNNGC 1 cut(s) 111
CviAII CATG 2 cut(s) 163, 250
CviJI RGCY 4 cut(s) 6, 103, 109, 141
CviKI_1 RGCY 4 cut(s) 6, 103, 109, 141
DraIII CACNNNGTG 1 cut(s) 18
Eam1104I CTCTTC 2 cut(s) 93, 198
EarI CTCTTC 2 cut(s) 93, 198
Ecl136II GAGCTC 1 cut(s) 103
Eco24I GRGCYC 1 cut(s) 105
Eco53kI GAGCTC 1 cut(s) 103
EcoICRI GAGCTC 1 cut(s) 103
EcoT22I ATGCAT 1 cut(s) 172
EcoT38I GRGCYC 1 cut(s) 105
FaeI CATG 2 cut(s) 166, 253
FaiI YATR 7 cut(s) 10, 164, 172, 174, 251, 262, 273
FatI CATG 2 cut(s) 162, 249
FauNDI CATATG 1 cut(s) 172
FblI GTMKAC 1 cut(s) 290
FokI GGATG 2 cut(s) 67, 179
FriOI GRGCYC 1 cut(s) 105
Hin1II CATG 2 cut(s) 166, 253
HindIII AAGCTT 1 cut(s) 107
HinfI GANTC 1 cut(s) 253
Hpy166II GTNNAC 1 cut(s) 291
Hpy188I TCNGA 1 cut(s) 299
Hpy8I GTNNAC 1 cut(s) 291
HpyAV CCTTC 2 cut(s) 205, 243
HpyCH4IV ACGT 1 cut(s) 219
HpyCH4V TGCA 1 cut(s) 170
HpyF10VI GCNNNNNNNGC 1 cut(s) 68
HpySE526I ACGT 1 cut(s) 219
Hsp92II CATG 2 cut(s) 166, 253
LguI GCTCTTC 1 cut(s) 93
LpnPI CCDG 3 cut(s) 139, 175, 227
LweI GCATC 1 cut(s) 157
MaeII ACGT 1 cut(s) 219
MaeIII GTNAC 1 cut(s) 220
MboII GAAGA 4 cut(s) 110, 212, 215, 248
MhlI GDGCHC 1 cut(s) 105
MnlI CCTC 3 cut(s) 39, 88, 152
Mph1103I ATGCAT 1 cut(s) 172
MwoI GCNNNNNNNGC 1 cut(s) 68
NdeI CATATG 1 cut(s) 172
NlaIII CATG 2 cut(s) 166, 253
NmuCI GTSAC 1 cut(s) 220
NsiI ATGCAT 1 cut(s) 172
PciSI GCTCTTC 1 cut(s) 93
PfeI GAWTC 1 cut(s) 253
Psp124BI GAGCTC 1 cut(s) 105
SacI GAGCTC 1 cut(s) 105
SapI GCTCTTC 1 cut(s) 93
SduI GDGCHC 1 cut(s) 105
SetI ASST 5 cut(s) 20, 60, 105, 111, 222
SfaNI GCATC 1 cut(s) 157
SmlI CTYRAG 1 cut(s) 104
SmoI CTYRAG 1 cut(s) 104
SsiI CCGC 1 cut(s) 84
SstI GAGCTC 1 cut(s) 105
TaiI ACGT 1 cut(s) 222
TfiI GAWTC 1 cut(s) 253
TseFI GTSAC 1 cut(s) 220
Tsp45I GTSAC 1 cut(s) 220
TspDTI ATGAA 2 cut(s) 151, 213
XmiI GTMKAC 1 cut(s) 290
Zsp2I ATGCAT 1 cut(s) 172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.