Rh6DG161300

calcineurin b-like protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
Physical Location & Seq
Forward (+)
24219049 .. 24220913
1865 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG161300.1

Sequence Viewer

Length: 228 bp
ATGGCAATGACATCATCCGCTTTGAAAGAGGAAGAGCTCAAGCTTGCTGTGTTTCAAAATAGCAGTAAGCAGAGCCTCTTTTTTGATAGGATATTCATGGATGCATATGGAAAAGCAGATGACAGGATTGATGAAGAAGAGTGGAAGGAATACGTCACACAAAACCCTTCTCTACTGGAAAAACATGATTCTTCCATACTTGATGGACATATCTCTAGCATTTCCTAG

Protein Analysis

75

Amino Acids

8.6

Weight (kDa)

4.58

Isoelectric Point (pI)

49.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020380)

Species Orthologous Gene IDs
malus_domestica MD01G1081100.v1.1
rosa_chinensis RchiOBHm_Chr6g0269811
rosa_roxburghii Rroxscaffold_4G00314510
rosa_rugosa Rorug06G0050600
rosa_samantha Rh6CG169500 Rh6DG161300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 18
AgsI TTSAA 2 cut(s) 25, 56
AluBI AGCT 2 cut(s) 37, 43
AluI AGCT 2 cut(s) 37, 43
Alw21I GWGCWC 1 cut(s) 39
BanII GRGCYC 1 cut(s) 39
Bbv12I GWGCWC 1 cut(s) 39
BccI CCATC 1 cut(s) 197
BfaI CTAG 2 cut(s) 216, 226
BmsI GCATC 1 cut(s) 91
BpuEI CTTGAG 1 cut(s) 23
Bse1I ACTGG 1 cut(s) 180
Bse3DI GCAATG 1 cut(s) 12
BseGI GGATG 2 cut(s) 14, 106
BseMI GCAATG 1 cut(s) 12
BseNI ACTGG 1 cut(s) 180
BsiHKAI GWGCWC 1 cut(s) 39
Bsp1286I GDGCHC 1 cut(s) 39
BspACI CCGC 1 cut(s) 18
BspQI GCTCTTC 1 cut(s) 27
BsrDI GCAATG 1 cut(s) 12
BsrI ACTGG 1 cut(s) 180
Bst6I CTCTTC 2 cut(s) 27, 132
BstC8I GCNNGC 1 cut(s) 45
BstF5I GGATG 2 cut(s) 14, 106
BtsCI GGATG 2 cut(s) 14, 106
Cac8I GCNNGC 1 cut(s) 45
CviAII CATG 2 cut(s) 97, 185
CviJI RGCY 3 cut(s) 37, 43, 75
CviKI_1 RGCY 3 cut(s) 37, 43, 75
Eam1104I CTCTTC 2 cut(s) 27, 132
EarI CTCTTC 2 cut(s) 27, 132
Ecl136II GAGCTC 1 cut(s) 37
Eco24I GRGCYC 1 cut(s) 39
Eco53kI GAGCTC 1 cut(s) 37
EcoICRI GAGCTC 1 cut(s) 37
EcoT22I ATGCAT 1 cut(s) 106
EcoT38I GRGCYC 1 cut(s) 39
FaeI CATG 2 cut(s) 100, 188
FaiI YATR 6 cut(s) 98, 106, 108, 186, 197, 210
FatI CATG 2 cut(s) 96, 184
FauNDI CATATG 1 cut(s) 106
FokI GGATG 1 cut(s) 113
FriOI GRGCYC 1 cut(s) 39
FspBI CTAG 2 cut(s) 216, 226
Hin1II CATG 2 cut(s) 100, 188
HindIII AAGCTT 1 cut(s) 41
HinfI GANTC 1 cut(s) 188
HpyAV CCTTC 2 cut(s) 139, 177
HpyCH4IV ACGT 1 cut(s) 153
HpyCH4V TGCA 1 cut(s) 104
HpySE526I ACGT 1 cut(s) 153
Hsp92II CATG 2 cut(s) 100, 188
LguI GCTCTTC 1 cut(s) 27
LpnPI CCDG 2 cut(s) 109, 161
LweI GCATC 1 cut(s) 91
MaeI CTAG 2 cut(s) 216, 226
MaeII ACGT 1 cut(s) 153
MaeIII GTNAC 1 cut(s) 154
MboII GAAGA 4 cut(s) 44, 146, 149, 183
MhlI GDGCHC 1 cut(s) 39
MnlI CCTC 2 cut(s) 22, 86
Mph1103I ATGCAT 1 cut(s) 106
NdeI CATATG 1 cut(s) 106
NlaIII CATG 2 cut(s) 100, 188
NmuCI GTSAC 1 cut(s) 154
NsiI ATGCAT 1 cut(s) 106
PciSI GCTCTTC 1 cut(s) 27
PfeI GAWTC 1 cut(s) 188
Psp124BI GAGCTC 1 cut(s) 39
SacI GAGCTC 1 cut(s) 39
SapI GCTCTTC 1 cut(s) 27
SduI GDGCHC 1 cut(s) 39
SetI ASST 3 cut(s) 39, 45, 156
SfaNI GCATC 1 cut(s) 91
SgeI CNNG 7 cut(s) 52, 56, 109, 136, 188, 197, 212
SmlI CTYRAG 1 cut(s) 38
SmoI CTYRAG 1 cut(s) 38
SsiI CCGC 1 cut(s) 18
SspMI CTAG 2 cut(s) 216, 226
SstI GAGCTC 1 cut(s) 39
TaiI ACGT 1 cut(s) 156
TfiI GAWTC 1 cut(s) 188
TseFI GTSAC 1 cut(s) 154
Tsp45I GTSAC 1 cut(s) 154
TspDTI ATGAA 2 cut(s) 85, 147
XspI CTAG 2 cut(s) 216, 226
Zsp2I ATGCAT 1 cut(s) 106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.