Rroxscaffold_4G00314510

calcineurin b-like protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Forward (+)
38504431 .. 38507844
3414 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_4G00314510.1

Sequence Viewer

Length: 252 bp
ATGGCAATGACATCATCTGCTTTGAAAGAGGAAGAGCTCAAGCTTGCTGCGTTTCAAAATAACAGTAAGCAGAGCCTCCTGTTCGACAGGATATTCATGGATGCATATGGAAAAGCAGATGACAGGATTGATGAAGAAGAGTGGAAGGAATACGCCACAAAAATCCCTTCTCTAGTGAAAAACATGACTCTTCCATACTTGATAATTCACATTCATGAATTGGATGCACTTCTCTCAGGGACATATCTCTAG

Protein Analysis

83

Amino Acids

9.57

Weight (kDa)

4.85

Isoelectric Point (pI)

41.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020380)

Species Orthologous Gene IDs
malus_domestica MD01G1081100.v1.1
rosa_chinensis RchiOBHm_Chr6g0269811
rosa_roxburghii Rroxscaffold_4G00314510
rosa_rugosa Rorug06G0050600
rosa_samantha Rh6CG169500 Rh6DG161300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 2 cut(s) 25, 56
AluBI AGCT 2 cut(s) 37, 43
AluI AGCT 2 cut(s) 37, 43
Alw21I GWGCWC 1 cut(s) 39
ApeKI GCWGC 1 cut(s) 47
BanII GRGCYC 1 cut(s) 39
Bbv12I GWGCWC 1 cut(s) 39
BbvI GCAGC 1 cut(s) 34
BfaI CTAG 2 cut(s) 173, 250
BisI GCNGC 1 cut(s) 48
BlsI GCNGC 1 cut(s) 49
BmsI GCATC 2 cut(s) 91, 214
BpuEI CTTGAG 1 cut(s) 23
Bse3DI GCAATG 1 cut(s) 12
BseGI GGATG 2 cut(s) 106, 229
BseMI GCAATG 1 cut(s) 12
BseMII CTCAG 1 cut(s) 249
BseXI GCAGC 1 cut(s) 34
BsiHKAI GWGCWC 1 cut(s) 39
Bsp1286I GDGCHC 1 cut(s) 39
BspCNI CTCAG 1 cut(s) 248
BspHI TCATGA 1 cut(s) 214
BspQI GCTCTTC 1 cut(s) 27
BsrDI GCAATG 1 cut(s) 12
Bst4CI ACNGT 1 cut(s) 65
Bst6I CTCTTC 3 cut(s) 27, 132, 195
BstC8I GCNNGC 1 cut(s) 45
BstDEI CTNAG 1 cut(s) 235
BstF5I GGATG 2 cut(s) 106, 229
BstV1I GCAGC 1 cut(s) 34
BtsCI GGATG 2 cut(s) 106, 229
Cac8I GCNNGC 1 cut(s) 45
CciI TCATGA 1 cut(s) 214
CviAII CATG 3 cut(s) 97, 184, 215
CviJI RGCY 3 cut(s) 37, 43, 75
CviKI_1 RGCY 3 cut(s) 37, 43, 75
DdeI CTNAG 1 cut(s) 235
Eam1104I CTCTTC 3 cut(s) 27, 132, 195
EarI CTCTTC 3 cut(s) 27, 132, 195
Ecl136II GAGCTC 1 cut(s) 37
Eco24I GRGCYC 1 cut(s) 39
Eco53kI GAGCTC 1 cut(s) 37
EcoICRI GAGCTC 1 cut(s) 37
EcoT22I ATGCAT 1 cut(s) 106
EcoT38I GRGCYC 1 cut(s) 39
FaeI CATG 3 cut(s) 100, 187, 218
FaiI YATR 7 cut(s) 98, 106, 108, 185, 196, 216, 244
FatI CATG 3 cut(s) 96, 183, 214
FauNDI CATATG 1 cut(s) 106
Fnu4HI GCNGC 1 cut(s) 48
FokI GGATG 2 cut(s) 113, 236
FriOI GRGCYC 1 cut(s) 39
Fsp4HI GCNGC 1 cut(s) 48
FspBI CTAG 2 cut(s) 173, 250
GluI GCNGC 1 cut(s) 48
Hin1II CATG 3 cut(s) 100, 187, 218
HindIII AAGCTT 1 cut(s) 41
HinfI GANTC 1 cut(s) 187
Hpy188III TCNNGA 1 cut(s) 215
HpyAV CCTTC 2 cut(s) 139, 177
HpyCH4III ACNGT 1 cut(s) 65
HpyCH4V TGCA 2 cut(s) 104, 227
HpyF3I CTNAG 1 cut(s) 235
Hsp92II CATG 3 cut(s) 100, 187, 218
LguI GCTCTTC 1 cut(s) 27
LpnPI CCDG 4 cut(s) 73, 92, 109, 222
Lsp1109I GCAGC 1 cut(s) 34
LweI GCATC 2 cut(s) 91, 214
MaeI CTAG 2 cut(s) 173, 250
MboII GAAGA 4 cut(s) 44, 146, 149, 182
MhlI GDGCHC 1 cut(s) 39
MluCI AATT 2 cut(s) 204, 218
MlyI GAGTC 1 cut(s) 181
MnlI CCTC 2 cut(s) 22, 86
Mph1103I ATGCAT 1 cut(s) 106
MslI CAYNNNNRTG 1 cut(s) 213
NdeI CATATG 1 cut(s) 106
NlaIII CATG 3 cut(s) 100, 187, 218
NsiI ATGCAT 1 cut(s) 106
PagI TCATGA 1 cut(s) 214
PciSI GCTCTTC 1 cut(s) 27
PkrI GCNGC 1 cut(s) 49
PleI GAGTC 1 cut(s) 181
PpsI GAGTC 1 cut(s) 181
Psp124BI GAGCTC 1 cut(s) 39
RseI CAYNNNNRTG 1 cut(s) 213
SacI GAGCTC 1 cut(s) 39
SapI GCTCTTC 1 cut(s) 27
SatI GCNGC 1 cut(s) 48
SchI GAGTC 1 cut(s) 181
SduI GDGCHC 1 cut(s) 39
SetI ASST 2 cut(s) 39, 45
SfaNI GCATC 2 cut(s) 91, 214
SmiMI CAYNNNNRTG 1 cut(s) 213
SmlI CTYRAG 1 cut(s) 38
SmoI CTYRAG 1 cut(s) 38
Sse9I AATT 2 cut(s) 204, 218
SspMI CTAG 2 cut(s) 173, 250
SstI GAGCTC 1 cut(s) 39
TaaI ACNGT 1 cut(s) 65
TaqI TCGA 1 cut(s) 84
TasI AATT 2 cut(s) 204, 218
TseI GCWGC 1 cut(s) 47
TspDTI ATGAA 4 cut(s) 85, 147, 203, 231
XspI CTAG 2 cut(s) 173, 250
Zsp2I ATGCAT 1 cut(s) 106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.