Rh6CG169500

calcineurin b-like protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
Physical Location & Seq
Forward (+)
23115118 .. 23116967
1850 bp
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UTR
Exon/CDS
Intron
Rh6CG169500.1

Sequence Viewer

Length: 321 bp
ATGGGCTTATACACAAGTTGCAATGTAGTTCTCTCCACAATTTCCAATACCCATTGCCATTTGATTTCAGTTCTTGGAGTGGATTTGGAAAAGGTGGCAGAAATGGCAATGACATCATCCGCTTTGAAAGAGGAAGAGCTCAAGCTTGCTGTGTTTCAAAATAGCAGTAAGCAGAGCCTCTTTTTTGATAGGATATTCATGGATGCATATGGAAAAGCAGATGACAGGATTGATGAAGAAGAGTGGAAGGAATACGTCACACAAAACCCTTCTCTACTGGAAAAACATGATTCTTCCATACTTGATAATTCACATTCATGA

Protein Analysis

106

Amino Acids

11.98

Weight (kDa)

4.69

Isoelectric Point (pI)

34.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020380)

Species Orthologous Gene IDs
malus_domestica MD01G1081100.v1.1
rosa_chinensis RchiOBHm_Chr6g0269811
rosa_roxburghii Rroxscaffold_4G00314510
rosa_rugosa Rorug06G0050600
rosa_samantha Rh6CG169500 Rh6DG161300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 120
AgsI TTSAA 2 cut(s) 127, 158
AluBI AGCT 2 cut(s) 139, 145
AluI AGCT 2 cut(s) 139, 145
Alw21I GWGCWC 1 cut(s) 141
BanII GRGCYC 1 cut(s) 141
Bbv12I GWGCWC 1 cut(s) 141
BmsI GCATC 1 cut(s) 193
BpuEI CTTGAG 1 cut(s) 125
Bse1I ACTGG 1 cut(s) 282
Bse3DI GCAATG 3 cut(s) 28, 52, 114
BseGI GGATG 2 cut(s) 116, 208
BseMI GCAATG 3 cut(s) 28, 52, 114
BseNI ACTGG 1 cut(s) 282
BsiHKAI GWGCWC 1 cut(s) 141
Bsp1286I GDGCHC 1 cut(s) 141
BspACI CCGC 1 cut(s) 120
BspHI TCATGA 1 cut(s) 317
BspQI GCTCTTC 1 cut(s) 129
BsrDI GCAATG 3 cut(s) 28, 52, 114
BsrI ACTGG 1 cut(s) 282
Bst6I CTCTTC 2 cut(s) 129, 234
BstC8I GCNNGC 1 cut(s) 147
BstF5I GGATG 2 cut(s) 116, 208
BstMWI GCNNNNNNNGC 1 cut(s) 104
BtsCI GGATG 2 cut(s) 116, 208
Cac8I GCNNGC 1 cut(s) 147
CciI TCATGA 1 cut(s) 317
CviAII CATG 3 cut(s) 199, 287, 318
CviJI RGCY 4 cut(s) 6, 139, 145, 177
CviKI_1 RGCY 4 cut(s) 6, 139, 145, 177
Eam1104I CTCTTC 2 cut(s) 129, 234
EarI CTCTTC 2 cut(s) 129, 234
Ecl136II GAGCTC 1 cut(s) 139
Eco24I GRGCYC 1 cut(s) 141
Eco53kI GAGCTC 1 cut(s) 139
EcoICRI GAGCTC 1 cut(s) 139
EcoT22I ATGCAT 1 cut(s) 208
EcoT38I GRGCYC 1 cut(s) 141
FaeI CATG 3 cut(s) 202, 290, 321
FaiI YATR 7 cut(s) 10, 200, 208, 210, 288, 299, 319
FatI CATG 3 cut(s) 198, 286, 317
FauNDI CATATG 1 cut(s) 208
FokI GGATG 2 cut(s) 103, 215
FriOI GRGCYC 1 cut(s) 141
Hin1II CATG 3 cut(s) 202, 290, 321
HindIII AAGCTT 1 cut(s) 143
HinfI GANTC 1 cut(s) 290
Hpy188III TCNNGA 1 cut(s) 318
HpyAV CCTTC 2 cut(s) 241, 279
HpyCH4IV ACGT 1 cut(s) 255
HpyCH4V TGCA 2 cut(s) 21, 206
HpyF10VI GCNNNNNNNGC 1 cut(s) 104
HpySE526I ACGT 1 cut(s) 255
Hsp92II CATG 3 cut(s) 202, 290, 321
LguI GCTCTTC 1 cut(s) 129
LpnPI CCDG 2 cut(s) 211, 263
LweI GCATC 1 cut(s) 193
MaeII ACGT 1 cut(s) 255
MaeIII GTNAC 1 cut(s) 256
MboII GAAGA 4 cut(s) 146, 248, 251, 285
MhlI GDGCHC 1 cut(s) 141
MluCI AATT 2 cut(s) 39, 307
MnlI CCTC 2 cut(s) 124, 188
Mph1103I ATGCAT 1 cut(s) 208
MslI CAYNNNNRTG 1 cut(s) 316
MwoI GCNNNNNNNGC 1 cut(s) 104
NdeI CATATG 1 cut(s) 208
NlaIII CATG 3 cut(s) 202, 290, 321
NmuCI GTSAC 1 cut(s) 256
NsiI ATGCAT 1 cut(s) 208
PagI TCATGA 1 cut(s) 317
PciSI GCTCTTC 1 cut(s) 129
PfeI GAWTC 1 cut(s) 290
Psp124BI GAGCTC 1 cut(s) 141
RseI CAYNNNNRTG 1 cut(s) 316
SacI GAGCTC 1 cut(s) 141
SapI GCTCTTC 1 cut(s) 129
SduI GDGCHC 1 cut(s) 141
SetI ASST 4 cut(s) 96, 141, 147, 258
SfaNI GCATC 1 cut(s) 193
SgeI CNNG 9 cut(s) 27, 86, 154, 158, 211, 238, 290, 299, 314
SmiMI CAYNNNNRTG 1 cut(s) 316
SmlI CTYRAG 1 cut(s) 140
SmoI CTYRAG 1 cut(s) 140
Sse9I AATT 2 cut(s) 39, 307
SsiI CCGC 1 cut(s) 120
SstI GAGCTC 1 cut(s) 141
TaiI ACGT 1 cut(s) 258
TasI AATT 2 cut(s) 39, 307
TfiI GAWTC 1 cut(s) 290
TseFI GTSAC 1 cut(s) 256
Tsp45I GTSAC 1 cut(s) 256
TspDTI ATGAA 3 cut(s) 187, 249, 306
Zsp2I ATGCAT 1 cut(s) 208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.