Rorug06G0050600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0020380
Physical Location & Seq
Forward (+)
6996204 .. 6997286
1083 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0050600.1

Sequence Viewer

Length: 726 bp
ATGTGGGGAATGACGTACATACGGCCCTTATTTGGACTACTTAATGGCGAGGAAACAAGTGTTTTCCCTCGTGGAAAATTTGTACGGTACTCTTTGGATAGCAGAGGACATTCACGCCTTACTTACCACTCCGTGAGCGACTTTATAGATAGCCTGGAGGATGACGAGGTGGAGTGGCACCCATGGGGAACTGACCCATCTTCATTACCCGAGTACGTGCGTGAAACCATTGAAATTAGCGAGAAGAGAATTCTCTTCTATGGGCCTTGCGGCTATGCATGGTATTTAGGCGAGCGGGTCACTGCACAGAGCATAAACCTCCAGAGGTATTCCATTCCGAAACCTCCTCCAGGCTCAATGTTTGACGAACCTAACAGCAAGGAGATCAGAGACGGCACTTTGGGTTATCCGGCCACAGATTACCTGCGGGAGGTGGGGGAAGAAAAGTACCGATTATGGACTGAAAAGTACATCAAGTACCATGACTACCCAGCAGATGAGAACACGGAGCAGCCCCTTCCAGTGCACCCTCATGACATTTCTCACCTCCCTCAGCCCTATTGGCAAGTGAGTTTGCCGAATTGGCAAAATCCAAAAGATTTCCGAGTGGAAATGGTCACCGTGCCCCGTGGTGTTCGTAGCAATACATATCCCCTTCCTTCAGCCATTAAAGCTGTAAGTAAATTAAACGCAGCAGATTTGCTCGTTATACATGTAACATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

241

Amino Acids

27.94

Weight (kDa)

5.5

Isoelectric Point (pI)

40.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020380)

Species Orthologous Gene IDs
malus_domestica MD01G1081100.v1.1
rosa_chinensis RchiOBHm_Chr6g0269811
rosa_roxburghii Rroxscaffold_4G00314510
rosa_rugosa Rorug06G0050600
rosa_samantha Rh6CG169500 Rh6DG161300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 432
AccB1I GGYRCC 1 cut(s) 177
AccBSI CCGCTC 1 cut(s) 295
AciI CCGC 3 cut(s) 270, 295, 427
AcoI YGGCCR 1 cut(s) 411
AcsI RAATTY 2 cut(s) 77, 249
AcuI CTGAAG 1 cut(s) 645
AdeI CACNNNGTG 1 cut(s) 133
AfaI GTAC 7 cut(s) 17, 84, 89, 215, 449, 470, 479
AfiI CCNNNNNNNGG 3 cut(s) 32, 350, 430
AflIII ACRYGT 2 cut(s) 712, 719
AgsI TTSAA 1 cut(s) 233
AjnI CCWGG 2 cut(s) 153, 349
AluBI AGCT 1 cut(s) 674
AluI AGCT 1 cut(s) 674
Alw21I GWGCWC 1 cut(s) 528
Alw26I GTCTC 1 cut(s) 384
Alw44I GTGCAC 1 cut(s) 524
Ama87I CYCGRG 1 cut(s) 209
AoxI GGCC 3 cut(s) 23, 263, 411
ApaLI GTGCAC 1 cut(s) 524
ApeKI GCWGC 2 cut(s) 511, 692
ApoI RAATTY 2 cut(s) 77, 249
AspS9I GGNCC 2 cut(s) 24, 263
AsuHPI GGTGA 2 cut(s) 536, 610
AvaI CYCGRG 1 cut(s) 209
BaeGI GKGCMC 2 cut(s) 528, 627
BanI GGYRCC 1 cut(s) 177
BauI CACGAG 1 cut(s) 69
Bbv12I GWGCWC 1 cut(s) 528
BbvCI CCTCAGC 1 cut(s) 552
BbvI GCAGC 2 cut(s) 523, 704
BccI CCATC 1 cut(s) 205
BceAI ACGGC 2 cut(s) 38, 409
BciT130I CCWGG 2 cut(s) 155, 351
BcoDI GTCTC 1 cut(s) 384
BfuAI ACCTGC 1 cut(s) 432
BglI GCCNNNNNGGC 2 cut(s) 562, 583
BisI GCNGC 3 cut(s) 271, 512, 693
BlsI GCNGC 3 cut(s) 272, 513, 694
Bme1390I CCNGG 2 cut(s) 155, 351
BmeT110I CYCGRG 1 cut(s) 209
BmgT120I GGNCC 2 cut(s) 24, 263
BmiI GGNNCC 1 cut(s) 179
BmrFI CCNGG 2 cut(s) 155, 351
BpmI CTGGAG 3 cut(s) 176, 305, 333
Bpu10I CCTNAGC 1 cut(s) 552
BsaAI YACGTR 1 cut(s) 217
BsaJI CCNNGG 2 cut(s) 182, 628
Bsc4I CCNNNNNNNGG 3 cut(s) 32, 350, 430
Bse1I ACTGG 1 cut(s) 521
BseBI CCWGG 2 cut(s) 155, 351
BseDI CCNNGG 2 cut(s) 182, 628
BseGI GGATG 1 cut(s) 166
BseLI CCNNNNNNNGG 3 cut(s) 32, 350, 430
BseMII CTCAG 1 cut(s) 566
BseNI ACTGG 1 cut(s) 521
BseRI GAGGAG 1 cut(s) 336
BseSI GKGCMC 2 cut(s) 528, 627
BseXI GCAGC 2 cut(s) 523, 704
BseYI CCCAGC 1 cut(s) 490
BsgI GTGCAG 1 cut(s) 288
BshFI GGCC 3 cut(s) 25, 265, 413
BshNI GGYRCC 1 cut(s) 177
BsiHKAI GWGCWC 1 cut(s) 528
BsiHKCI CYCGRG 1 cut(s) 209
BsiSI CCGG 1 cut(s) 410
BslI CCNNNNNNNGG 3 cut(s) 32, 350, 430
BsmAI GTCTC 1 cut(s) 384
BsmBI CGTCTC 1 cut(s) 384
BsnI GGCC 3 cut(s) 25, 265, 413
BsoBI CYCGRG 1 cut(s) 209
Bsp1286I GDGCHC 2 cut(s) 528, 627
Bsp143I GATC 1 cut(s) 384
Bsp19I CCATGG 1 cut(s) 182
BspACI CCGC 3 cut(s) 270, 295, 427
BspANI GGCC 3 cut(s) 25, 265, 413
BspCNI CTCAG 1 cut(s) 565
BspHI TCATGA 1 cut(s) 532
BspLI GGNNCC 1 cut(s) 179
BspMI ACCTGC 1 cut(s) 432
BspT107I GGYRCC 1 cut(s) 177
BsrBI CCGCTC 1 cut(s) 295
BsrI ACTGG 1 cut(s) 521
BssECI CCNNGG 2 cut(s) 182, 628
BssMI GATC 1 cut(s) 384
BssSI CACGAG 1 cut(s) 69
BssT1I CCWWGG 1 cut(s) 182
Bst2BI CACGAG 1 cut(s) 69
Bst2UI CCWGG 2 cut(s) 155, 351
Bst4CI ACNGT 2 cut(s) 87, 622
Bst6I CTCTTC 2 cut(s) 239, 260
BstBAI YACGTR 1 cut(s) 217
BstC8I GCNNGC 1 cut(s) 293
BstDEI CTNAG 1 cut(s) 552
BstDSI CCRYGG 2 cut(s) 182, 628
BstEII GGTNACC 1 cut(s) 616
BstENI CCTNNNNNAGG 2 cut(s) 348, 428
BstF5I GGATG 1 cut(s) 166
BstKTI GATC 1 cut(s) 387
BstMAI GTCTC 1 cut(s) 384
BstMBI GATC 1 cut(s) 384
BstMWI GCNNNNNNNGC 3 cut(s) 562, 583, 671
BstNI CCWGG 2 cut(s) 155, 351
BstNSI RCATGY 2 cut(s) 716, 723
BstPI GGTNACC 1 cut(s) 616
BstSCI CCNGG 2 cut(s) 153, 349
BstSLI GKGCMC 2 cut(s) 528, 627
BstV1I GCAGC 2 cut(s) 523, 704
BsuRI GGCC 3 cut(s) 25, 265, 413
BtgI CCRYGG 2 cut(s) 182, 628
BtsCI GGATG 1 cut(s) 166
BtsI GCAGTG 1 cut(s) 300
BtsIMutI CAGTG 2 cut(s) 300, 528
BveI ACCTGC 1 cut(s) 432
Cac8I GCNNGC 1 cut(s) 293
CciI TCATGA 1 cut(s) 532
Cfr13I GGNCC 2 cut(s) 24, 263
Csp6I GTAC 7 cut(s) 16, 83, 88, 214, 448, 469, 478
CviAII CATG 6 cut(s) 183, 279, 482, 533, 713, 720
CviQI GTAC 7 cut(s) 16, 83, 88, 214, 448, 469, 478
DdeI CTNAG 1 cut(s) 552
DpnI GATC 1 cut(s) 386
DpnII GATC 1 cut(s) 384
DraIII CACNNNGTG 1 cut(s) 133
EaeI YGGCCR 1 cut(s) 411
Eam1104I CTCTTC 2 cut(s) 239, 260
EarI CTCTTC 2 cut(s) 239, 260
Eco130I CCWWGG 1 cut(s) 182
Eco57I CTGAAG 1 cut(s) 645
Eco88I CYCGRG 1 cut(s) 209
Eco91I GGTNACC 1 cut(s) 616
EcoNI CCTNNNNNAGG 2 cut(s) 348, 428
EcoO65I GGTNACC 1 cut(s) 616
EcoRI GAATTC 1 cut(s) 249
EcoRII CCWGG 2 cut(s) 153, 349
EcoT14I CCWWGG 1 cut(s) 182
EcoT22I ATGCAT 1 cut(s) 280
ErhI CCWWGG 1 cut(s) 182
Esp3I CGTCTC 1 cut(s) 384
FaeI CATG 6 cut(s) 186, 282, 485, 536, 716, 723
FatI CATG 6 cut(s) 182, 278, 481, 532, 712, 719
FauI CCCGC 2 cut(s) 288, 420
Fnu4HI GCNGC 3 cut(s) 271, 512, 693
FokI GGATG 1 cut(s) 173
Fsp4HI GCNGC 3 cut(s) 271, 512, 693
GluI GCNGC 3 cut(s) 271, 512, 693
GsaI CCCAGC 1 cut(s) 494
GsuI CTGGAG 3 cut(s) 176, 305, 333
HaeIII GGCC 3 cut(s) 25, 265, 413
HapII CCGG 1 cut(s) 410
Hin1II CATG 6 cut(s) 186, 282, 485, 536, 716, 723
HpaII CCGG 1 cut(s) 410
HphI GGTGA 2 cut(s) 536, 610
Hpy166II GTNNAC 1 cut(s) 526
Hpy188I TCNGA 3 cut(s) 339, 389, 605
Hpy188III TCNNGA 2 cut(s) 322, 533
Hpy8I GTNNAC 1 cut(s) 526
HpyAV CCTTC 3 cut(s) 527, 665, 669
HpyCH4III ACNGT 2 cut(s) 87, 622
HpyCH4IV ACGT 2 cut(s) 14, 216
HpyCH4V TGCA 3 cut(s) 278, 305, 526
HpyF10VI GCNNNNNNNGC 3 cut(s) 562, 583, 671
HpyF3I CTNAG 1 cut(s) 552
HpySE526I ACGT 2 cut(s) 14, 216
Hsp92II CATG 6 cut(s) 186, 282, 485, 536, 716, 723
Kzo9I GATC 1 cut(s) 384
LmnI GCTCC 1 cut(s) 508
LpnPI CCDG 9 cut(s) 140, 167, 335, 336, 363, 423, 437, 504, 534
Lsp1109I GCAGC 2 cut(s) 523, 704
MaeII ACGT 2 cut(s) 14, 216
MaeIII GTNAC 3 cut(s) 298, 616, 715
MalI GATC 1 cut(s) 386
MbiI CCGCTC 1 cut(s) 295
MboI GATC 1 cut(s) 384
MboII GAAGA 4 cut(s) 192, 247, 256, 452
MhlI GDGCHC 2 cut(s) 528, 627
MluCI AATT 5 cut(s) 77, 234, 249, 580, 683
Mph1103I ATGCAT 1 cut(s) 280
MseI TTAA 3 cut(s) 42, 669, 686
MslI CAYNNNNRTG 1 cut(s) 531
MspI CCGG 1 cut(s) 410
MspR9I CCNGG 2 cut(s) 155, 351
MvaI CCWGG 2 cut(s) 155, 351
MwoI GCNNNNNNNGC 3 cut(s) 562, 583, 671
NcoI CCATGG 1 cut(s) 182
NdeII GATC 1 cut(s) 384
NlaIII CATG 6 cut(s) 186, 282, 485, 536, 716, 723
NlaIV GGNNCC 1 cut(s) 179
NmuCI GTSAC 2 cut(s) 298, 616
NsiI ATGCAT 1 cut(s) 280
NspI RCATGY 2 cut(s) 716, 723
PagI TCATGA 1 cut(s) 532
PciI ACATGT 2 cut(s) 712, 719
PkrI GCNGC 3 cut(s) 272, 513, 694
Ppu21I YACGTR 1 cut(s) 217
PscI ACATGT 2 cut(s) 712, 719
Psp6I CCWGG 2 cut(s) 153, 349
PspEI GGTNACC 1 cut(s) 616
PspFI CCCAGC 1 cut(s) 490
PspGI CCWGG 2 cut(s) 153, 349
PspN4I GGNNCC 1 cut(s) 179
PspPI GGNCC 2 cut(s) 24, 263
RsaI GTAC 7 cut(s) 17, 84, 89, 215, 449, 470, 479
RsaNI GTAC 7 cut(s) 16, 83, 88, 214, 448, 469, 478
RseI CAYNNNNRTG 1 cut(s) 531
SaqAI TTAA 3 cut(s) 42, 669, 686
SatI GCNGC 3 cut(s) 271, 512, 693
Sau3AI GATC 1 cut(s) 384
Sau96I GGNCC 2 cut(s) 24, 263
ScrFI CCNGG 2 cut(s) 155, 351
SduI GDGCHC 2 cut(s) 528, 627
SmiMI CAYNNNNRTG 1 cut(s) 531
Sse9I AATT 5 cut(s) 77, 234, 249, 580, 683
SsiI CCGC 3 cut(s) 270, 295, 427
StyD4I CCNGG 2 cut(s) 153, 349
StyI CCWWGG 1 cut(s) 182
TaaI ACNGT 2 cut(s) 87, 622
TaiI ACGT 2 cut(s) 17, 219
TasI AATT 5 cut(s) 77, 234, 249, 580, 683
TatI WGTACW 1 cut(s) 468
TauI GCSGC 1 cut(s) 273
Tru1I TTAA 3 cut(s) 42, 669, 686
Tru9I TTAA 3 cut(s) 42, 669, 686
TscAI CASTG 2 cut(s) 307, 528
TseFI GTSAC 2 cut(s) 298, 616
TseI GCWGC 2 cut(s) 511, 692
Tsp45I GTSAC 2 cut(s) 298, 616
TspDTI ATGAA 1 cut(s) 192
TspGWI ACGGA 2 cut(s) 121, 521
TspRI CASTG 2 cut(s) 307, 528
VneI GTGCAC 1 cut(s) 524
XagI CCTNNNNNAGG 2 cut(s) 348, 428
XapI RAATTY 2 cut(s) 77, 249
XceI RCATGY 2 cut(s) 716, 723
Zsp2I ATGCAT 1 cut(s) 280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.