Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0020577

Physical Location & Seq

Genomic Coordinates Reverse (-)

33086170 .. 33089531

Gene Structure 3362 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGCATGGCGTACACAATTTCTTTGTGACATTCATTGAAGAACTACAAGATAGGCCTCCTGGTCATGATTGGGAGCTTGAACCAGGTGTCACATGTGGTGACTACCTATTTGGAATGCTACAGGGAACACGATCGGCTCTTTATTCTAATGACCGAGAGTCGCTTACGGTTTCTGTGGAAGAAGTGACACCTAGATCTGTAGGTGCTCTTATAGCTCTTTATGAGAAAGCGGTTGGAATTTACGCCTCGCTTGTCAACATTAATGCTTACCATCAACTTGGGAGTAAGCATCTTCTAGAGATGAATAGGATTTTAAGGCCCGGGGGATACTTTATCTTGTCAACTAAACATGACAGCTTTGATGCTGAAGAAGAATGCAGCTACGATGATTTGACTCTTAGAATGGAAAAGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004347 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0005982 GO:0006073 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009909 GO:0009911 GO:0009941 GO:0009987 GO:0016853 GO:0016860 GO:0016861 GO:0031967 GO:0031975 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048518 GO:0048580 GO:0048582 GO:0048831 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0065007 GO:0071704 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

ko00010 ko00030 ko00500 ko00520 ko01100 ko01110 ko01120 ko01130 ko01200 map00010 map00030 map00500 map00520 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

PGI

Protein Analysis

138

Amino Acids

15.64

Weight (kDa)

5.02

Isoelectric Point (pI)

58.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PGI	PF00342	47 - 96	3.8e-07	Phosphoglucose isomerase
Methyltransf_29	PF03141	90 - 118	5.1e-06	Putative S-adenosyl-L-methionine-dependent methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020577)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0272701
rosa_roxburghii	Rroxscaffold_1G00020820 Rroxscaffold_5G00359980
rosa_rugosa	Rorug05G0199500
rosa_samantha	Rh6DG179900
rosa_wichuraiana	Rw7G031230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	230
AcsI	RAATTY	1 cut(s)	237
AcuI	CTGAAG	1 cut(s)	387
AfaI	GTAC	1 cut(s)	12
AflIII	ACRYGT	1 cut(s)	92
AgsI	TTSAA	2 cut(s)	38, 80
AhdI	GACNNNNNGTC	1 cut(s)	157
AjnI	CCWGG	2 cut(s)	58, 82
AluBI	AGCT	4 cut(s)	76, 215, 357, 381
AluI	AGCT	4 cut(s)	76, 215, 357, 381
Alw21I	GWGCWC	1 cut(s)	208
Ama87I	CYCGRG	1 cut(s)	320
AoxI	GGCC	2 cut(s)	53, 317
ApeKI	GCWGC	1 cut(s)	378
ApoI	RAATTY	1 cut(s)	237
ArsI	GACNNNNNNTTYG	2 cut(s)	92, 124
AseI	ATTAAT	1 cut(s)	261
AspS9I	GGNCC	1 cut(s)	318
AsuC2I	CCSGG	2 cut(s)	321, 322
AsuHPI	GGTGA	1 cut(s)	110
AvaI	CYCGRG	1 cut(s)	320
Bbv12I	GWGCWC	1 cut(s)	208
BbvI	GCAGC	1 cut(s)	390
BccI	CCATC	1 cut(s)	279
BciT130I	CCWGG	2 cut(s)	60, 84
BciVI	GTATCC	1 cut(s)	320
BcnI	CCSGG	2 cut(s)	321, 322
BfaI	CTAG	2 cut(s)	192, 296
BfmI	CTRYAG	2 cut(s)	119, 198
BfuI	GTATCC	1 cut(s)	320
BglII	AGATCT	1 cut(s)	194
BisI	GCNGC	1 cut(s)	379
BlsI	GCNGC	1 cut(s)	380
Bme1390I	CCNGG	4 cut(s)	60, 84, 321, 322
BmeRI	GACNNNNNGTC	1 cut(s)	157
BmeT110I	CYCGRG	1 cut(s)	320
BmgT120I	GGNCC	1 cut(s)	318
BmrFI	CCNGG	4 cut(s)	60, 84, 321, 322
BmsI	GCATC	2 cut(s)	298, 352
BpuMI	CCSGG	2 cut(s)	321, 322
BsaJI	CCNNGG	2 cut(s)	320, 321
BseBI	CCWGG	2 cut(s)	60, 84
BseDI	CCNNGG	2 cut(s)	320, 321
BseXI	GCAGC	1 cut(s)	390
Bsh1285I	CGRYCG	1 cut(s)	134
BshFI	GGCC	2 cut(s)	55, 319
BsiEI	CGRYCG	1 cut(s)	134
BsiHKAI	GWGCWC	1 cut(s)	208
BsiHKCI	CYCGRG	1 cut(s)	320
BsiSI	CCGG	1 cut(s)	321
BsmI	GAATGC	2 cut(s)	120, 380
BsnI	GGCC	2 cut(s)	55, 319
BsoBI	CYCGRG	1 cut(s)	320
Bsp1286I	GDGCHC	1 cut(s)	208
Bsp143I	GATC	2 cut(s)	131, 194
BspACI	CCGC	1 cut(s)	230
BspANI	GGCC	2 cut(s)	55, 319
BspHI	TCATGA	1 cut(s)	64
BssECI	CCNNGG	2 cut(s)	320, 321
BssMI	GATC	2 cut(s)	131, 194
Bst2UI	CCWGG	2 cut(s)	60, 84
Bst4CI	ACNGT	1 cut(s)	169
BstDEI	CTNAG	1 cut(s)	398
BstKTI	GATC	2 cut(s)	134, 197
BstMBI	GATC	2 cut(s)	131, 194
BstMCI	CGRYCG	1 cut(s)	134
BstMWI	GCNNNNNNNGC	1 cut(s)	212
BstNI	CCWGG	2 cut(s)	60, 84
BstNSI	RCATGY	1 cut(s)	96
BstSCI	CCNGG	4 cut(s)	58, 82, 319, 320
BstSFI	CTRYAG	2 cut(s)	119, 198
BstV1I	GCAGC	1 cut(s)	390
BstX2I	RGATCY	1 cut(s)	194
BstXI	CCANNNNNNTGG	1 cut(s)	278
BstYI	RGATCY	1 cut(s)	194
BsuI	GTATCC	1 cut(s)	320
BsuRI	GGCC	2 cut(s)	55, 319
CciI	TCATGA	1 cut(s)	64
Cfr13I	GGNCC	1 cut(s)	318
Cfr9I	CCCGGG	1 cut(s)	320
CsiI	ACCWGGT	1 cut(s)	82
Csp6I	GTAC	1 cut(s)	11
CviAII	CATG	4 cut(s)	5, 65, 93, 350
CviJI	RGCY	7 cut(s)	55, 76, 137, 215, 319, 357, 381
CviKI_1	RGCY	7 cut(s)	55, 76, 137, 215, 319, 357, 381
CviQI	GTAC	1 cut(s)	11
DdeI	CTNAG	1 cut(s)	398
DpnI	GATC	2 cut(s)	133, 196
DpnII	GATC	2 cut(s)	131, 194
DriI	GACNNNNNGTC	1 cut(s)	157
Eam1105I	GACNNNNNGTC	1 cut(s)	157
Eco147I	AGGCCT	1 cut(s)	55
Eco57I	CTGAAG	1 cut(s)	387
Eco88I	CYCGRG	1 cut(s)	320
EcoRII	CCWGG	2 cut(s)	58, 82
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	4 cut(s)	8, 68, 96, 353
FaiI	YATR	6 cut(s)	6, 66, 94, 212, 222, 351
FatI	CATG	4 cut(s)	4, 64, 92, 349
Fnu4HI	GCNGC	1 cut(s)	379
Fsp4HI	GCNGC	1 cut(s)	379
FspBI	CTAG	2 cut(s)	192, 296
GluI	GCNGC	1 cut(s)	379
HaeIII	GGCC	2 cut(s)	55, 319
HapII	CCGG	1 cut(s)	321
Hin1II	CATG	4 cut(s)	8, 68, 96, 353
HincII	GTYRAC	2 cut(s)	256, 342
HindII	GTYRAC	2 cut(s)	256, 342
HinfI	GANTC	2 cut(s)	158, 394
HpaII	CCGG	1 cut(s)	321
HphI	GGTGA	1 cut(s)	110
Hpy166II	GTNNAC	3 cut(s)	13, 256, 342
Hpy188III	TCNNGA	2 cut(s)	65, 296
Hpy8I	GTNNAC	3 cut(s)	13, 256, 342
HpyCH4III	ACNGT	1 cut(s)	169
HpyCH4V	TGCA	2 cut(s)	4, 378
HpyF10VI	GCNNNNNNNGC	1 cut(s)	212
HpyF3I	CTNAG	1 cut(s)	398
Hsp92II	CATG	4 cut(s)	8, 68, 96, 353
Kzo9I	GATC	2 cut(s)	131, 194
LmnI	GCTCC	1 cut(s)	73
LpnPI	CCDG	6 cut(s)	45, 69, 72, 96, 107, 334
Lsp1109I	GCAGC	1 cut(s)	390
LweI	GCATC	2 cut(s)	298, 352
MabI	ACCWGGT	1 cut(s)	82
MaeI	CTAG	2 cut(s)	192, 296
MaeIII	GTNAC	4 cut(s)	25, 88, 98, 184
MalI	GATC	2 cut(s)	133, 196
MboI	GATC	2 cut(s)	131, 194
MboII	GAAGA	5 cut(s)	50, 191, 284, 380, 383
MflI	RGATCY	1 cut(s)	194
MhlI	GDGCHC	1 cut(s)	208
MluCI	AATT	2 cut(s)	16, 237
MlyI	GAGTC	2 cut(s)	167, 388
MmeI	TCCRAC	1 cut(s)	214
MnlI	CCTC	2 cut(s)	66, 256
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	2 cut(s)	261, 314
MspI	CCGG	1 cut(s)	321
MspR9I	CCNGG	4 cut(s)	60, 84, 321, 322
Mva1269I	GAATGC	2 cut(s)	120, 380
MvaI	CCWGG	2 cut(s)	60, 84
MwoI	GCNNNNNNNGC	1 cut(s)	212
NciI	CCSGG	2 cut(s)	321, 322
NdeII	GATC	2 cut(s)	131, 194
NlaIII	CATG	4 cut(s)	8, 68, 96, 353
NmuCI	GTSAC	4 cut(s)	25, 88, 98, 184
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	96
PagI	TCATGA	1 cut(s)	64
PceI	AGGCCT	1 cut(s)	55
PciI	ACATGT	1 cut(s)	92
PctI	GAATGC	2 cut(s)	120, 380
PkrI	GCNGC	1 cut(s)	380
Ple19I	CGATCG	1 cut(s)	134
PleI	GAGTC	2 cut(s)	166, 388
PpsI	GAGTC	2 cut(s)	166, 388
PscI	ACATGT	1 cut(s)	92
PshBI	ATTAAT	1 cut(s)	261
Psp6I	CCWGG	2 cut(s)	58, 82
PspGI	CCWGG	2 cut(s)	58, 82
PspPI	GGNCC	1 cut(s)	318
PsuI	RGATCY	1 cut(s)	194
PvuI	CGATCG	1 cut(s)	134
RsaI	GTAC	1 cut(s)	12
RsaNI	GTAC	1 cut(s)	11
SaqAI	TTAA	2 cut(s)	261, 314
SatI	GCNGC	1 cut(s)	379
Sau3AI	GATC	2 cut(s)	131, 194
Sau96I	GGNCC	1 cut(s)	318
SchI	GAGTC	2 cut(s)	167, 388
ScrFI	CCNGG	4 cut(s)	60, 84, 321, 322
SduI	GDGCHC	1 cut(s)	208
SetI	ASST	8 cut(s)	78, 88, 108, 193, 205, 217, 359, 383
SexAI	ACCWGGT	1 cut(s)	82
SfaNI	GCATC	2 cut(s)	298, 352
SfcI	CTRYAG	2 cut(s)	119, 198
SmaI	CCCGGG	1 cut(s)	322
Sse9I	AATT	2 cut(s)	16, 237
SseBI	AGGCCT	1 cut(s)	55
SsiI	CCGC	1 cut(s)	230
SspMI	CTAG	2 cut(s)	192, 296
StuI	AGGCCT	1 cut(s)	55
StyD4I	CCNGG	4 cut(s)	58, 82, 319, 320
TaaI	ACNGT	1 cut(s)	169
TaqII	GACCGA	1 cut(s)	168
TasI	AATT	2 cut(s)	16, 237
Tru1I	TTAA	2 cut(s)	261, 314
Tru9I	TTAA	2 cut(s)	261, 314
TseFI	GTSAC	4 cut(s)	25, 88, 98, 184
TseI	GCWGC	1 cut(s)	378
Tsp45I	GTSAC	4 cut(s)	25, 88, 98, 184
TspDTI	ATGAA	2 cut(s)	22, 317
TspMI	CCCGGG	1 cut(s)	320
VspI	ATTAAT	1 cut(s)	261
XapI	RAATTY	1 cut(s)	237
XbaI	TCTAGA	1 cut(s)	295
XceI	RCATGY	1 cut(s)	96
XmaI	CCCGGG	1 cut(s)	320
XspI	CTAG	2 cut(s)	192, 296
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.