Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0020577

Physical Location & Seq

Genomic Coordinates Forward (+)

25338441 .. 25344691

Gene Structure 6251 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00020820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGCATGGCGTACACAATTTCTTTGTGACATTCATTGAAGTACTACAAGATAGGCCTCCTGGTCATGATTGGGAGCTTGAACCAGGTGTCACATGTGGTGACTACCTATTTGGAATGCTACGATCGATTACGGTTTCTGTGGAAGAATTGACACCTAGATCTGTAGGTGCTCTTATAGCACTTTATGAGAGAGCCGTTGGGATTTACGCCTCGCTTGTCAACATTAATGCTTACCATCAACCTGGGAGTAAGCATCTTCTAGAGATGAATAGGATTTTAAGGCCTGGGGATACTTTATCTTGTCAACTAAACATGACAGCTTTGAAGCTGAAGAAGGGATTAGTGGCTAACCCACAATCCTTGGGTAGTCGGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004347 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0005982 GO:0006073 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009909 GO:0009911 GO:0009941 GO:0009987 GO:0016853 GO:0016860 GO:0016861 GO:0031967 GO:0031975 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048518 GO:0048580 GO:0048582 GO:0048831 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0065007 GO:0071704 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

ko00010 ko00030 ko00500 ko00520 ko01100 ko01110 ko01120 ko01130 ko01200 map00010 map00030 map00500 map00520 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

PGI

Protein Analysis

125

Amino Acids

13.85

Weight (kDa)

6.96

Isoelectric Point (pI)

50.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020577)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0272701
rosa_roxburghii	Rroxscaffold_1G00020820 Rroxscaffold_5G00359980
rosa_rugosa	Rorug05G0199500
rosa_samantha	Rh6DG179900
rosa_wichuraiana	Rw7G031230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	350
AfaI	GTAC	2 cut(s)	12, 42
AflIII	ACRYGT	1 cut(s)	92
AgsI	TTSAA	3 cut(s)	38, 80, 325
AjnI	CCWGG	4 cut(s)	58, 82, 241, 283
AluBI	AGCT	3 cut(s)	76, 320, 328
AluI	AGCT	3 cut(s)	76, 320, 328
Alw21I	GWGCWC	1 cut(s)	172
AoxI	GGCC	2 cut(s)	53, 281
ArsI	GACNNNNNNTTYG	2 cut(s)	92, 124
AseI	ATTAAT	1 cut(s)	225
AsuHPI	GGTGA	1 cut(s)	110
Bbv12I	GWGCWC	1 cut(s)	172
BccI	CCATC	1 cut(s)	243
BceAI	ACGGC	1 cut(s)	179
BciT130I	CCWGG	4 cut(s)	60, 84, 243, 285
BciVI	GTATCC	1 cut(s)	283
BfaI	CTAG	2 cut(s)	156, 260
BfmI	CTRYAG	1 cut(s)	162
BfuI	GTATCC	1 cut(s)	283
BglII	AGATCT	1 cut(s)	158
BmcAI	AGTACT	1 cut(s)	42
Bme1390I	CCNGG	4 cut(s)	60, 84, 243, 285
BmrFI	CCNGG	4 cut(s)	60, 84, 243, 285
BmsI	GCATC	1 cut(s)	262
Bsa29I	ATCGAT	1 cut(s)	125
BsaJI	CCNNGG	3 cut(s)	242, 284, 360
BseBI	CCWGG	4 cut(s)	60, 84, 243, 285
BseCI	ATCGAT	1 cut(s)	125
BseDI	CCNNGG	3 cut(s)	242, 284, 360
Bsh1285I	CGRYCG	1 cut(s)	125
BshFI	GGCC	2 cut(s)	55, 283
BshVI	ATCGAT	1 cut(s)	125
BsiEI	CGRYCG	1 cut(s)	125
BsiHKAI	GWGCWC	1 cut(s)	172
BsmI	GAATGC	1 cut(s)	120
BsnI	GGCC	2 cut(s)	55, 283
Bsp1286I	GDGCHC	1 cut(s)	172
Bsp143I	GATC	2 cut(s)	122, 158
BspANI	GGCC	2 cut(s)	55, 283
BspDI	ATCGAT	1 cut(s)	125
BspHI	TCATGA	1 cut(s)	64
BssECI	CCNNGG	3 cut(s)	242, 284, 360
BssMI	GATC	2 cut(s)	122, 158
BssT1I	CCWWGG	1 cut(s)	360
Bst2UI	CCWGG	4 cut(s)	60, 84, 243, 285
Bst4CI	ACNGT	1 cut(s)	133
BstKTI	GATC	2 cut(s)	125, 161
BstMBI	GATC	2 cut(s)	122, 158
BstMCI	CGRYCG	1 cut(s)	125
BstMWI	GCNNNNNNNGC	1 cut(s)	176
BstNI	CCWGG	4 cut(s)	60, 84, 243, 285
BstNSI	RCATGY	1 cut(s)	96
BstSCI	CCNGG	4 cut(s)	58, 82, 241, 283
BstSFI	CTRYAG	1 cut(s)	162
BstX2I	RGATCY	1 cut(s)	158
BstXI	CCANNNNNNTGG	1 cut(s)	242
BstYI	RGATCY	1 cut(s)	158
Bsu15I	ATCGAT	1 cut(s)	125
BsuI	GTATCC	1 cut(s)	283
BsuRI	GGCC	2 cut(s)	55, 283
BsuTUI	ATCGAT	1 cut(s)	125
CciI	TCATGA	1 cut(s)	64
ClaI	ATCGAT	1 cut(s)	125
CsiI	ACCWGGT	1 cut(s)	82
Csp6I	GTAC	2 cut(s)	11, 41
CspCI	CAANNNNNGTGG	2 cut(s)	342, 377
CviAII	CATG	4 cut(s)	5, 65, 93, 313
CviJI	RGCY	7 cut(s)	55, 76, 194, 283, 320, 328, 347
CviKI_1	RGCY	7 cut(s)	55, 76, 194, 283, 320, 328, 347
CviQI	GTAC	2 cut(s)	11, 41
DpnI	GATC	2 cut(s)	124, 160
DpnII	GATC	2 cut(s)	122, 158
Eco130I	CCWWGG	1 cut(s)	360
Eco147I	AGGCCT	2 cut(s)	55, 283
Eco57I	CTGAAG	1 cut(s)	350
EcoRII	CCWGG	4 cut(s)	58, 82, 241, 283
EcoT14I	CCWWGG	1 cut(s)	360
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	360
FaeI	CATG	4 cut(s)	8, 68, 96, 316
FaiI	YATR	6 cut(s)	6, 66, 94, 176, 186, 314
FatI	CATG	4 cut(s)	4, 64, 92, 312
FspBI	CTAG	2 cut(s)	156, 260
HaeIII	GGCC	2 cut(s)	55, 283
Hin1II	CATG	4 cut(s)	8, 68, 96, 316
HincII	GTYRAC	2 cut(s)	220, 305
HindII	GTYRAC	2 cut(s)	220, 305
HphI	GGTGA	1 cut(s)	110
Hpy166II	GTNNAC	3 cut(s)	13, 220, 305
Hpy188I	TCNGA	1 cut(s)	372
Hpy188III	TCNNGA	2 cut(s)	65, 260
Hpy8I	GTNNAC	3 cut(s)	13, 220, 305
HpyAV	CCTTC	1 cut(s)	328
HpyCH4III	ACNGT	1 cut(s)	133
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	1 cut(s)	176
Hsp92II	CATG	4 cut(s)	8, 68, 96, 316
Kzo9I	GATC	2 cut(s)	122, 158
LmnI	GCTCC	1 cut(s)	73
LpnPI	CCDG	8 cut(s)	45, 69, 72, 96, 228, 255, 270, 297
LweI	GCATC	1 cut(s)	262
MabI	ACCWGGT	1 cut(s)	82
MaeI	CTAG	2 cut(s)	156, 260
MaeIII	GTNAC	3 cut(s)	25, 88, 98
MalI	GATC	2 cut(s)	124, 160
MboI	GATC	2 cut(s)	122, 158
MboII	GAAGA	3 cut(s)	155, 248, 343
MflI	RGATCY	1 cut(s)	158
MhlI	GDGCHC	1 cut(s)	172
MluCI	AATT	2 cut(s)	16, 146
MmeI	TCCRAC	1 cut(s)	350
MnlI	CCTC	2 cut(s)	66, 220
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	2 cut(s)	225, 278
MspR9I	CCNGG	4 cut(s)	60, 84, 243, 285
Mva1269I	GAATGC	1 cut(s)	120
MvaI	CCWGG	4 cut(s)	60, 84, 243, 285
MwoI	GCNNNNNNNGC	1 cut(s)	176
NdeII	GATC	2 cut(s)	122, 158
NlaIII	CATG	4 cut(s)	8, 68, 96, 316
NmuCI	GTSAC	3 cut(s)	25, 88, 98
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	96
PagI	TCATGA	1 cut(s)	64
PceI	AGGCCT	2 cut(s)	55, 283
PciI	ACATGT	1 cut(s)	92
PctI	GAATGC	1 cut(s)	120
Ple19I	CGATCG	1 cut(s)	125
PscI	ACATGT	1 cut(s)	92
PshBI	ATTAAT	1 cut(s)	225
Psp6I	CCWGG	4 cut(s)	58, 82, 241, 283
PspGI	CCWGG	4 cut(s)	58, 82, 241, 283
PsuI	RGATCY	1 cut(s)	158
PvuI	CGATCG	1 cut(s)	125
RsaI	GTAC	2 cut(s)	12, 42
RsaNI	GTAC	2 cut(s)	11, 41
SaqAI	TTAA	2 cut(s)	225, 278
Sau3AI	GATC	2 cut(s)	122, 158
ScaI	AGTACT	1 cut(s)	42
ScrFI	CCNGG	4 cut(s)	60, 84, 243, 285
SduI	GDGCHC	1 cut(s)	172
SetI	ASST	8 cut(s)	78, 88, 108, 157, 169, 244, 322, 330
SexAI	ACCWGGT	1 cut(s)	82
SfaNI	GCATC	1 cut(s)	262
SfcI	CTRYAG	1 cut(s)	162
Sse9I	AATT	2 cut(s)	16, 146
SseBI	AGGCCT	2 cut(s)	55, 283
SspMI	CTAG	2 cut(s)	156, 260
StuI	AGGCCT	2 cut(s)	55, 283
StyD4I	CCNGG	4 cut(s)	58, 82, 241, 283
StyI	CCWWGG	1 cut(s)	360
TaaI	ACNGT	1 cut(s)	133
TaqI	TCGA	1 cut(s)	125
TasI	AATT	2 cut(s)	16, 146
TatI	WGTACW	1 cut(s)	40
Tru1I	TTAA	2 cut(s)	225, 278
Tru9I	TTAA	2 cut(s)	225, 278
TseFI	GTSAC	3 cut(s)	25, 88, 98
Tsp45I	GTSAC	3 cut(s)	25, 88, 98
TspDTI	ATGAA	2 cut(s)	22, 281
VspI	ATTAAT	1 cut(s)	225
XbaI	TCTAGA	1 cut(s)	259
XceI	RCATGY	1 cut(s)	96
XspI	CTAG	2 cut(s)	156, 260
ZrmI	AGTACT	1 cut(s)	42
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.