Rw7G031230

sphingolipid transporter spinster homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0020577
Physical Location & Seq
Reverse (-)
44580993 .. 44584030
3038 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G031230.1

Sequence Viewer

Length: 366 bp
ATGAAAAGGATTTATCATTGTGCAGTGGAGGGGAATGCTCTTAAGGCAATTGAACTGACTAAACAGCTGGCGAATGACTTACTGGAGAAAAATAAAGACTTGCATTTTGATCTTCTCAGCCTTCACTTTGTTGAACTTGTTTGCTCTAGAAATAAAGGGAGCACGGATCAGCATGCTGTAAATCCGTTTAAGCTCATTGGACTTGGATTGTCAATTTGGACTTTTGCTGTAACTGGTTGTGGTTTTTCATTCAACTTCTTGTCTATCTTAATCTGCCGCATGCTAGTTGGTGTTGGTGAGGCTTCGTTTATTAGTCTTGCAGCTCCGTTCATTGATGATAATGCCCCAGCTCTCAGGTTCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MFS_1 OATP

Protein Analysis

121

Amino Acids

13.36

Weight (kDa)

6.88

Isoelectric Point (pI)

27.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CTLH PF10607 1 - 51 2.6e-07 CTLH/CRA C-terminal to LisH motif domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020577)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0272701
rosa_roxburghii Rroxscaffold_1G00020820 Rroxscaffold_5G00359980
rosa_rugosa Rorug05G0199500
rosa_samantha Rh6DG179900
rosa_wichuraiana Rw7G031230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 277
AclWI GGATC 1 cut(s) 174
AflII CTTAAG 1 cut(s) 41
AgsI TTSAA 3 cut(s) 53, 134, 253
AluBI AGCT 4 cut(s) 67, 193, 323, 350
AluI AGCT 4 cut(s) 67, 193, 323, 350
Alw21I GWGCWC 1 cut(s) 164
AlwI GGATC 1 cut(s) 174
ApeKI GCWGC 1 cut(s) 320
ArsI GACNNNNNNTTYG 2 cut(s) 89, 121
AsuHPI GGTGA 1 cut(s) 308
Bbv12I GWGCWC 1 cut(s) 164
BbvI GCAGC 1 cut(s) 332
BfaI CTAG 2 cut(s) 147, 284
BfrI CTTAAG 1 cut(s) 41
BisI GCNGC 2 cut(s) 277, 321
BlsI GCNGC 2 cut(s) 278, 322
BpmI CTGGAG 1 cut(s) 104
Bse1I ACTGG 2 cut(s) 87, 238
BseMII CTCAG 1 cut(s) 130
BseNI ACTGG 2 cut(s) 87, 238
BseXI GCAGC 1 cut(s) 332
BseYI CCCAGC 1 cut(s) 346
BsgI GTGCAG 1 cut(s) 42
BsiHKAI GWGCWC 1 cut(s) 164
BsmI GAATGC 1 cut(s) 40
Bsp1286I GDGCHC 1 cut(s) 164
Bsp143I GATC 2 cut(s) 109, 166
BspACI CCGC 1 cut(s) 277
BspCNI CTCAG 2 cut(s) 129, 366
BspPI GGATC 1 cut(s) 174
BspTI CTTAAG 1 cut(s) 41
BsrI ACTGG 2 cut(s) 87, 238
BssMI GATC 2 cut(s) 109, 166
BstAFI CTTAAG 1 cut(s) 41
BstC8I GCNNGC 3 cut(s) 69, 174, 281
BstDEI CTNAG 2 cut(s) 116, 353
BstKTI GATC 2 cut(s) 112, 169
BstMBI GATC 2 cut(s) 109, 166
BstMWI GCNNNNNNNGC 1 cut(s) 44
BstNSI RCATGY 2 cut(s) 176, 283
BstV1I GCAGC 1 cut(s) 332
BtsI GCAGTG 1 cut(s) 30
BtsIMutI CAGTG 1 cut(s) 30
Cac8I GCNNGC 3 cut(s) 69, 174, 281
CviAII CATG 2 cut(s) 173, 280
CviJI RGCY 6 cut(s) 67, 120, 193, 302, 323, 350
CviKI_1 RGCY 6 cut(s) 67, 120, 193, 302, 323, 350
DdeI CTNAG 2 cut(s) 116, 353
DpnI GATC 2 cut(s) 111, 168
DpnII GATC 2 cut(s) 109, 166
FaeI CATG 2 cut(s) 176, 283
FaiI YATR 2 cut(s) 174, 281
FatI CATG 2 cut(s) 172, 279
Fnu4HI GCNGC 2 cut(s) 277, 321
Fsp4HI GCNGC 2 cut(s) 277, 321
FspBI CTAG 2 cut(s) 147, 284
GluI GCNGC 2 cut(s) 277, 321
GsaI CCCAGC 1 cut(s) 350
GsuI CTGGAG 1 cut(s) 104
Hin1II CATG 2 cut(s) 176, 283
HphI GGTGA 1 cut(s) 308
Hpy188III TCNNGA 1 cut(s) 147
HpyAV CCTTC 1 cut(s) 131
HpyCH4V TGCA 3 cut(s) 23, 103, 320
HpyF10VI GCNNNNNNNGC 1 cut(s) 44
HpyF3I CTNAG 2 cut(s) 116, 353
Hsp92II CATG 2 cut(s) 176, 283
Kzo9I GATC 2 cut(s) 109, 166
LmnI GCTCC 2 cut(s) 159, 328
LpnPI CCDG 5 cut(s) 53, 68, 219, 340, 360
Lsp1109I GCAGC 1 cut(s) 332
MaeI CTAG 2 cut(s) 147, 284
MaeIII GTNAC 1 cut(s) 229
MalI GATC 2 cut(s) 111, 168
MboI GATC 2 cut(s) 109, 166
MboII GAAGA 1 cut(s) 104
MfeI CAATTG 1 cut(s) 48
MhlI GDGCHC 1 cut(s) 164
MluCI AATT 2 cut(s) 48, 213
MnlI CCTC 2 cut(s) 22, 292
MseI TTAA 3 cut(s) 42, 189, 269
MspA1I CMGCKG 1 cut(s) 67
MspCI CTTAAG 1 cut(s) 41
MunI CAATTG 1 cut(s) 48
Mva1269I GAATGC 1 cut(s) 40
MwoI GCNNNNNNNGC 1 cut(s) 44
NdeII GATC 2 cut(s) 109, 166
NlaIII CATG 2 cut(s) 176, 283
NspI RCATGY 2 cut(s) 176, 283
PaeI GCATGC 2 cut(s) 176, 283
PctI GAATGC 1 cut(s) 40
PkrI GCNGC 2 cut(s) 278, 322
PspFI CCCAGC 1 cut(s) 346
PvuII CAGCTG 1 cut(s) 67
SaqAI TTAA 3 cut(s) 42, 189, 269
SatI GCNGC 2 cut(s) 277, 321
Sau3AI GATC 2 cut(s) 109, 166
SduI GDGCHC 1 cut(s) 164
SetI ASST 5 cut(s) 69, 195, 325, 352, 359
SmlI CTYRAG 1 cut(s) 41
SmoI CTYRAG 1 cut(s) 41
SphI GCATGC 2 cut(s) 176, 283
Sse9I AATT 2 cut(s) 48, 213
SsiI CCGC 1 cut(s) 277
SspMI CTAG 2 cut(s) 147, 284
TasI AATT 2 cut(s) 48, 213
TauI GCSGC 1 cut(s) 279
Tru1I TTAA 3 cut(s) 42, 189, 269
Tru9I TTAA 3 cut(s) 42, 189, 269
TscAI CASTG 1 cut(s) 30
TseI GCWGC 1 cut(s) 320
TspDTI ATGAA 4 cut(s) 17, 237, 319, 349
TspGWI ACGGA 3 cut(s) 174, 179, 315
TspRI CASTG 1 cut(s) 30
Vha464I CTTAAG 1 cut(s) 41
XbaI TCTAGA 1 cut(s) 146
XceI RCATGY 2 cut(s) 176, 283
XspI CTAG 2 cut(s) 147, 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.