Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0020577

Physical Location & Seq

Genomic Coordinates Reverse (-)

19765737 .. 19767033

Gene Structure 1297 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0199500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGGGCACAAGGGTTGTGGTAGTGATCGGAGGTGGGGATGGGGCTGGGATTAGAATTAGAATTAGGGTTGTGGTGGAATTAGAAGTGGGATTGAGTTTGATGGGTGTGGATTTGGAAGGTGGAGGAGATGCAGTGGGTGGTGTACCTGCTTTTAATAATCTGAACCATTTGGAATTGACTCTTGGTGGTTCCACCTGTTGGCGATATCTAATAGAGTTTCTCAAGAAATCACAGAATCTAGAATATCTTGTCATCAAACATGATTGTGGATTCAAGCATGAGGACTTTACTCCTCCAGAGTTTGTGCCTGTTTGTATGTTGTCACATCTCAAGACTATCACCATAGCAAGCTTCAAGGGAAGTCAGGATAATATGAGAGTAGCTCAGTATTTGCTAAAGTACAGTGAAGTTTTGAATAAGATGATTTTTACCATTTCAGAAGGTCTTCCGAGAGCAGAAGAGAAGGCATTGTACAAAGAATTTTTAATGTTCGAACGGCGTTCAAAGACTTGTCAAGTTGAAATATATAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004347 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0005982 GO:0006073 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009909 GO:0009911 GO:0009941 GO:0009987 GO:0016853 GO:0016860 GO:0016861 GO:0031967 GO:0031975 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048518 GO:0048580 GO:0048582 GO:0048831 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0065007 GO:0071704 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

ko00010 ko00030 ko00500 ko00520 ko01100 ko01110 ko01120 ko01130 ko01200 map00010 map00030 map00500 map00520 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

PGI

Protein Analysis

177

Amino Acids

19.81

Weight (kDa)

6.43

Isoelectric Point (pI)

35.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBD	PF08387	99 - 143	9.4e-12	FBD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020577)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0272701
rosa_roxburghii	Rroxscaffold_1G00020820 Rroxscaffold_5G00359980
rosa_rugosa	Rorug05G0199500
rosa_samantha	Rh6DG179900
rosa_wichuraiana	Rw7G031230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	154
AccB7I	CCANNNNNTGG	1 cut(s)	198
AcsI	RAATTY	1 cut(s)	479
AfaI	GTAC	3 cut(s)	144, 401, 473
AfiI	CCNNNNNNNGG	1 cut(s)	198
AgsI	TTSAA	5 cut(s)	274, 355, 415, 504, 521
AjuI	GAANNNNNNNTTGG	2 cut(s)	165, 197
AluBI	AGCT	2 cut(s)	351, 383
AluI	AGCT	2 cut(s)	351, 383
ApoI	RAATTY	1 cut(s)	479
Asp700I	GAANNNNTTC	1 cut(s)	444
AsuHPI	GGTGA	1 cut(s)	331
AsuII	TTCGAA	1 cut(s)	492
BaeGI	GKGCMC	1 cut(s)	8
BarI	GAAGNNNNNNTAC	2 cut(s)	455, 487
BbsI	GAAGAC	1 cut(s)	437
BccI	CCATC	2 cut(s)	32, 94
BceAI	ACGGC	1 cut(s)	512
BfaI	CTAG	2 cut(s)	239, 532
BfuAI	ACCTGC	1 cut(s)	154
BmiI	GGNNCC	1 cut(s)	190
BmsI	GCATC	1 cut(s)	118
BpiI	GAAGAC	1 cut(s)	437
BplI	GAGNNNNNCTC	2 cut(s)	367, 399
BpmI	CTGGAG	1 cut(s)	279
Bpu14I	TTCGAA	1 cut(s)	492
BpuEI	CTTGAG	2 cut(s)	206, 314
BsaXI	ACNNNNNCTCC	2 cut(s)	117, 147
Bsc4I	CCNNNNNNNGG	1 cut(s)	198
BseGI	GGATG	1 cut(s)	43
BseLI	CCNNNNNNNGG	1 cut(s)	198
BseMII	CTCAG	1 cut(s)	398
BseRI	GAGGAG	2 cut(s)	138, 282
BseSI	GKGCMC	1 cut(s)	8
BseYI	CCCAGC	1 cut(s)	44
BslI	CCNNNNNNNGG	1 cut(s)	198
Bsp119I	TTCGAA	1 cut(s)	492
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp1407I	TGTACA	1 cut(s)	471
Bsp143I	GATC	1 cut(s)	24
BspCNI	CTCAG	1 cut(s)	397
BspLI	GGNNCC	1 cut(s)	190
BspMI	ACCTGC	1 cut(s)	154
BspT104I	TTCGAA	1 cut(s)	492
BsrGI	TGTACA	1 cut(s)	471
BssMI	GATC	1 cut(s)	24
Bst4CI	ACNGT	1 cut(s)	404
Bst6I	CTCTTC	1 cut(s)	453
BstAUI	TGTACA	1 cut(s)	471
BstBI	TTCGAA	1 cut(s)	492
BstC8I	GCNNGC	1 cut(s)	349
BstDEI	CTNAG	1 cut(s)	384
BstF5I	GGATG	1 cut(s)	43
BstKTI	GATC	1 cut(s)	27
BstMBI	GATC	1 cut(s)	24
BstSLI	GKGCMC	1 cut(s)	8
BstV2I	GAAGAC	1 cut(s)	437
BtsCI	GGATG	1 cut(s)	43
BtsI	GCAGTG	1 cut(s)	138
BtsIMutI	CAGTG	2 cut(s)	138, 409
BveI	ACCTGC	1 cut(s)	154
Cac8I	GCNNGC	1 cut(s)	349
Csp6I	GTAC	3 cut(s)	143, 400, 472
CspCI	CAANNNNNGTGG	1 cut(s)	32
CviAII	CATG	2 cut(s)	260, 278
CviJI	RGCY	3 cut(s)	44, 351, 383
CviKI_1	RGCY	3 cut(s)	44, 351, 383
CviQI	GTAC	3 cut(s)	143, 400, 472
DdeI	CTNAG	1 cut(s)	384
DpnI	GATC	1 cut(s)	26
DpnII	GATC	1 cut(s)	24
Eam1104I	CTCTTC	1 cut(s)	453
EarI	CTCTTC	1 cut(s)	453
Eco32I	GATATC	1 cut(s)	206
EcoRV	GATATC	1 cut(s)	206
FaeI	CATG	2 cut(s)	263, 281
FaiI	YATR	7 cut(s)	261, 279, 317, 344, 374, 526, 528
FatI	CATG	2 cut(s)	259, 277
FokI	GGATG	1 cut(s)	50
FspBI	CTAG	2 cut(s)	239, 532
GsaI	CCCAGC	1 cut(s)	48
GsuI	CTGGAG	1 cut(s)	279
Hin1II	CATG	2 cut(s)	263, 281
HindIII	AAGCTT	1 cut(s)	349
HinfI	GANTC	3 cut(s)	178, 235, 270
HphI	GGTGA	1 cut(s)	331
Hpy166II	GTNNAC	1 cut(s)	143
Hpy188I	TCNGA	4 cut(s)	29, 162, 439, 450
Hpy188III	TCNNGA	5 cut(s)	223, 239, 296, 331, 365
Hpy8I	GTNNAC	1 cut(s)	143
HpyAV	CCTTC	3 cut(s)	110, 434, 457
HpyCH4III	ACNGT	1 cut(s)	404
HpyCH4V	TGCA	1 cut(s)	131
HpyF3I	CTNAG	1 cut(s)	384
Hsp92II	CATG	2 cut(s)	263, 281
Kzo9I	GATC	1 cut(s)	24
LpnPI	CCDG	6 cut(s)	30, 159, 208, 309, 321, 350
LweI	GCATC	1 cut(s)	118
MaeI	CTAG	2 cut(s)	239, 532
MaeIII	GTNAC	1 cut(s)	321
MalI	GATC	1 cut(s)	26
MboI	GATC	1 cut(s)	24
MboII	GAAGA	2 cut(s)	437, 470
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	5 cut(s)	54, 60, 77, 173, 479
MlyI	GAGTC	1 cut(s)	172
MnlI	CCTC	4 cut(s)	23, 116, 274, 303
MroXI	GAANNNNTTC	1 cut(s)	444
MseI	TTAA	2 cut(s)	153, 485
MslI	CAYNNNNRTG	1 cut(s)	264
NdeII	GATC	1 cut(s)	24
NlaIII	CATG	2 cut(s)	263, 281
NlaIV	GGNNCC	1 cut(s)	190
NmuCI	GTSAC	1 cut(s)	321
NspV	TTCGAA	1 cut(s)	492
PdmI	GAANNNNTTC	1 cut(s)	444
PfeI	GAWTC	2 cut(s)	235, 270
PflMI	CCANNNNNTGG	1 cut(s)	198
PleI	GAGTC	1 cut(s)	172
PpsI	GAGTC	1 cut(s)	172
PspFI	CCCAGC	1 cut(s)	44
PspN4I	GGNNCC	1 cut(s)	190
RsaI	GTAC	3 cut(s)	144, 401, 473
RsaNI	GTAC	3 cut(s)	143, 400, 472
RseI	CAYNNNNRTG	1 cut(s)	264
SaqAI	TTAA	2 cut(s)	153, 485
Sau3AI	GATC	1 cut(s)	24
SchI	GAGTC	1 cut(s)	172
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	7 cut(s)	34, 121, 148, 197, 353, 385, 445
SfaNI	GCATC	1 cut(s)	118
SfuI	TTCGAA	1 cut(s)	492
SmiMI	CAYNNNNRTG	1 cut(s)	264
SmlI	CTYRAG	2 cut(s)	221, 329
SmoI	CTYRAG	2 cut(s)	221, 329
Sse9I	AATT	5 cut(s)	54, 60, 77, 173, 479
SspMI	CTAG	2 cut(s)	239, 532
TaaI	ACNGT	1 cut(s)	404
TaqI	TCGA	1 cut(s)	492
TasI	AATT	5 cut(s)	54, 60, 77, 173, 479
TatI	WGTACW	2 cut(s)	399, 471
TfiI	GAWTC	2 cut(s)	235, 270
Tru1I	TTAA	2 cut(s)	153, 485
Tru9I	TTAA	2 cut(s)	153, 485
TscAI	CASTG	2 cut(s)	138, 409
TseFI	GTSAC	1 cut(s)	321
Tsp45I	GTSAC	1 cut(s)	321
TspRI	CASTG	2 cut(s)	138, 409
Van91I	CCANNNNNTGG	1 cut(s)	198
XapI	RAATTY	1 cut(s)	479
XbaI	TCTAGA	1 cut(s)	238
XmnI	GAANNNNTTC	1 cut(s)	444
XspI	CTAG	2 cut(s)	239, 532

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.