Rroxscaffold_5G00359980

Glucose-induced degradation protein 8 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0020577
Physical Location & Seq
Forward (+)
40284729 .. 40302776
18048 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00359980.1

Sequence Viewer

Length: 609 bp
ATGAAAAGGATTTATCATTGTGCGGTGGAGGGGAATGCTCTTAAGGCAATTGAACCGACTAAACAAATGGCGAATGACTTATCGGAGAAAAATAAAGACTTGCATTTTGATCTTCTCGGCCTTCACTTTGTTGAACTTGTTTGCTCTAGAAATAAAGGGAGCACGGATCAGCATGCAGTCGATTACGGTTTCGTGGAAGAAGTGACACCTAGATTTGTAGGTGTTCTTATAGCACTTTATGAGAGAGCGGTTGGGATTTATGCCTCACTTGTCAACATTAATGCTTACCATCAACCTAGGAGTAAGCATCTTCTAGATCTGAATAGGATTTTAAGGCCCGGGGGATACTTTATCTTGTCAACTAAACATGACAGCTTTGAAGTGAAGAAGGTGATCGATTGGTGTTGGGCAATGATTTTTGGTGGCAGTGATTGGTTTATGCACTTTGGTGTAGCTTGTTGCAGCTCTACAAACTTGGGAGTGGTAGCTCGCCGGAGCTTGGTGAATGGCGGTGTCCAACGGTGGGCCAATTGTGGAAGAGGCCAAGATTCCCATGCAATGAAGGGGGACATTGGTATCGAGCGTAAGTCTAACGTTTGTTATAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CLTH

Protein Analysis

202

Amino Acids

22.71

Weight (kDa)

8.82

Isoelectric Point (pI)

44.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020577)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0272701
rosa_roxburghii Rroxscaffold_1G00020820 Rroxscaffold_5G00359980
rosa_rugosa Rorug05G0199500
rosa_samantha Rh6DG179900
rosa_wichuraiana Rw7G031230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 603
AccBSI CCGCTC 1 cut(s) 248
AciI CCGC 3 cut(s) 23, 248, 510
AclI AACGTT 1 cut(s) 594
AclWI GGATC 1 cut(s) 174
AfiI CCNNNNNNNGG 2 cut(s) 499, 523
AflII CTTAAG 1 cut(s) 41
AgsI TTSAA 3 cut(s) 53, 134, 380
AleI CACNNNNGTG 1 cut(s) 447
AluBI AGCT 5 cut(s) 375, 455, 465, 488, 498
AluI AGCT 5 cut(s) 375, 455, 465, 488, 498
Alw21I GWGCWC 1 cut(s) 164
AlwI GGATC 1 cut(s) 174
Ama87I CYCGRG 1 cut(s) 338
AoxI GGCC 4 cut(s) 118, 335, 525, 541
ApeKI GCWGC 1 cut(s) 462
ArsI GACNNNNNNTTYG 2 cut(s) 89, 121
AseI ATTAAT 1 cut(s) 279
AspA2I CCTAGG 1 cut(s) 296
AspS9I GGNCC 2 cut(s) 336, 525
AsuC2I CCSGG 2 cut(s) 339, 340
AsuHPI GGTGA 2 cut(s) 403, 514
AvaI CYCGRG 1 cut(s) 338
AvrII CCTAGG 1 cut(s) 296
BaeI ACNNNNGTAYC 2 cut(s) 559, 592
Bbv12I GWGCWC 1 cut(s) 164
BbvI GCAGC 1 cut(s) 474
BccI CCATC 1 cut(s) 297
BciVI GTATCC 1 cut(s) 338
BcnI CCSGG 2 cut(s) 339, 340
BfaI CTAG 4 cut(s) 147, 210, 297, 314
BfrI CTTAAG 1 cut(s) 41
BfuI GTATCC 1 cut(s) 338
BglII AGATCT 1 cut(s) 316
BisI GCNGC 1 cut(s) 463
BlnI CCTAGG 1 cut(s) 296
BlsI GCNGC 1 cut(s) 464
Bme1390I CCNGG 2 cut(s) 339, 340
BmeT110I CYCGRG 1 cut(s) 338
BmgT120I GGNCC 2 cut(s) 336, 525
BmrFI CCNGG 2 cut(s) 339, 340
BmsI GCATC 1 cut(s) 316
BpuMI CCSGG 2 cut(s) 339, 340
Bsa29I ATCGAT 1 cut(s) 396
BsaJI CCNNGG 3 cut(s) 296, 338, 339
Bsc4I CCNNNNNNNGG 2 cut(s) 499, 523
Bse3DI GCAATG 2 cut(s) 417, 564
BseCI ATCGAT 1 cut(s) 396
BseDI CCNNGG 3 cut(s) 296, 338, 339
BseLI CCNNNNNNNGG 2 cut(s) 499, 523
BseMI GCAATG 2 cut(s) 417, 564
BseXI GCAGC 1 cut(s) 474
BshFI GGCC 4 cut(s) 120, 337, 527, 543
BshVI ATCGAT 1 cut(s) 396
BsiHKAI GWGCWC 1 cut(s) 164
BsiHKCI CYCGRG 1 cut(s) 338
BsiSI CCGG 2 cut(s) 339, 493
BslFI GGGAC 1 cut(s) 581
BslI CCNNNNNNNGG 2 cut(s) 499, 523
BsmFI GGGAC 1 cut(s) 581
BsmI GAATGC 1 cut(s) 40
BsnI GGCC 4 cut(s) 120, 337, 527, 543
BsoBI CYCGRG 1 cut(s) 338
Bsp1286I GDGCHC 1 cut(s) 164
Bsp143I GATC 4 cut(s) 109, 166, 316, 393
BspACI CCGC 3 cut(s) 23, 248, 510
BspANI GGCC 4 cut(s) 120, 337, 527, 543
BspDI ATCGAT 1 cut(s) 396
BspPI GGATC 1 cut(s) 174
BspTI CTTAAG 1 cut(s) 41
BsrBI CCGCTC 1 cut(s) 248
BsrDI GCAATG 2 cut(s) 417, 564
BssECI CCNNGG 3 cut(s) 296, 338, 339
BssMI GATC 4 cut(s) 109, 166, 316, 393
BssT1I CCWWGG 1 cut(s) 296
Bst4CI ACNGT 2 cut(s) 188, 522
Bst6I CTCTTC 1 cut(s) 532
BstAFI CTTAAG 1 cut(s) 41
BstC8I GCNNGC 2 cut(s) 174, 490
BstKTI GATC 4 cut(s) 112, 169, 319, 396
BstMBI GATC 4 cut(s) 109, 166, 316, 393
BstMWI GCNNNNNNNGC 1 cut(s) 44
BstNSI RCATGY 1 cut(s) 176
BstSCI CCNGG 2 cut(s) 337, 338
BstV1I GCAGC 1 cut(s) 474
BstX2I RGATCY 1 cut(s) 316
BstYI RGATCY 1 cut(s) 316
Bsu15I ATCGAT 1 cut(s) 396
BsuI GTATCC 1 cut(s) 338
BsuRI GGCC 4 cut(s) 120, 337, 527, 543
BsuTUI ATCGAT 1 cut(s) 396
BtsI GCAGTG 1 cut(s) 433
BtsIMutI CAGTG 1 cut(s) 433
Cac8I GCNNGC 2 cut(s) 174, 490
Cfr13I GGNCC 2 cut(s) 336, 525
Cfr9I CCCGGG 1 cut(s) 338
ClaI ATCGAT 1 cut(s) 396
CviAII CATG 3 cut(s) 173, 368, 554
CviJI RGCY 9 cut(s) 120, 337, 375, 455, 465, 488, 498, 527, 543
CviKI_1 RGCY 9 cut(s) 120, 337, 375, 455, 465, 488, 498, 527, 543
DpnI GATC 4 cut(s) 111, 168, 318, 395
DpnII GATC 4 cut(s) 109, 166, 316, 393
Eam1104I CTCTTC 1 cut(s) 532
EarI CTCTTC 1 cut(s) 532
Eco130I CCWWGG 1 cut(s) 296
Eco88I CYCGRG 1 cut(s) 338
EcoT14I CCWWGG 1 cut(s) 296
ErhI CCWWGG 1 cut(s) 296
FaeI CATG 3 cut(s) 176, 371, 557
FaiI YATR 8 cut(s) 174, 230, 240, 261, 369, 440, 555, 603
FaqI GGGAC 1 cut(s) 581
FatI CATG 3 cut(s) 172, 367, 553
Fnu4HI GCNGC 1 cut(s) 463
Fsp4HI GCNGC 1 cut(s) 463
FspBI CTAG 4 cut(s) 147, 210, 297, 314
GluI GCNGC 1 cut(s) 463
HaeIII GGCC 4 cut(s) 120, 337, 527, 543
HapII CCGG 2 cut(s) 339, 493
Hin1II CATG 3 cut(s) 176, 371, 557
HincII GTYRAC 2 cut(s) 274, 360
HindII GTYRAC 2 cut(s) 274, 360
HinfI GANTC 1 cut(s) 548
HpaII CCGG 2 cut(s) 339, 493
HphI GGTGA 2 cut(s) 403, 514
Hpy166II GTNNAC 2 cut(s) 274, 360
Hpy188I TCNGA 2 cut(s) 85, 321
Hpy188III TCNNGA 2 cut(s) 147, 314
Hpy8I GTNNAC 2 cut(s) 274, 360
HpyAV CCTTC 3 cut(s) 131, 382, 556
HpyCH4III ACNGT 2 cut(s) 188, 522
HpyCH4IV ACGT 1 cut(s) 594
HpyCH4V TGCA 5 cut(s) 103, 176, 442, 462, 557
HpyF10VI GCNNNNNNNGC 1 cut(s) 44
HpySE526I ACGT 1 cut(s) 594
Hsp92II CATG 3 cut(s) 176, 371, 557
Kzo9I GATC 4 cut(s) 109, 166, 316, 393
LmnI GCTCC 2 cut(s) 159, 495
LpnPI CCDG 2 cut(s) 352, 506
Lsp1109I GCAGC 1 cut(s) 474
LweI GCATC 1 cut(s) 316
MaeI CTAG 4 cut(s) 147, 210, 297, 314
MaeII ACGT 1 cut(s) 594
MaeIII GTNAC 1 cut(s) 202
MalI GATC 4 cut(s) 111, 168, 318, 395
MbiI CCGCTC 1 cut(s) 248
MboI GATC 4 cut(s) 109, 166, 316, 393
MboII GAAGA 5 cut(s) 104, 209, 302, 397, 549
MfeI CAATTG 2 cut(s) 48, 529
MflI RGATCY 1 cut(s) 316
MhlI GDGCHC 1 cut(s) 164
MluCI AATT 2 cut(s) 48, 529
MmeI TCCRAC 1 cut(s) 541
MnlI CCTC 3 cut(s) 22, 274, 533
MseI TTAA 3 cut(s) 42, 279, 332
MslI CAYNNNNRTG 1 cut(s) 447
MspCI CTTAAG 1 cut(s) 41
MspI CCGG 2 cut(s) 339, 493
MspR9I CCNGG 2 cut(s) 339, 340
MunI CAATTG 2 cut(s) 48, 529
Mva1269I GAATGC 1 cut(s) 40
MwoI GCNNNNNNNGC 1 cut(s) 44
NciI CCSGG 2 cut(s) 339, 340
NdeII GATC 4 cut(s) 109, 166, 316, 393
NlaIII CATG 3 cut(s) 176, 371, 557
NmeAIII GCCGAG 1 cut(s) 96
NmuCI GTSAC 1 cut(s) 202
NspI RCATGY 1 cut(s) 176
OliI CACNNNNGTG 1 cut(s) 447
PaeI GCATGC 1 cut(s) 176
PctI GAATGC 1 cut(s) 40
PfeI GAWTC 1 cut(s) 548
PkrI GCNGC 1 cut(s) 464
PshBI ATTAAT 1 cut(s) 279
PsiI TTATAA 1 cut(s) 603
Psp1406I AACGTT 1 cut(s) 594
PspPI GGNCC 2 cut(s) 336, 525
PsuI RGATCY 1 cut(s) 316
RseI CAYNNNNRTG 1 cut(s) 447
SaqAI TTAA 3 cut(s) 42, 279, 332
SatI GCNGC 1 cut(s) 463
Sau3AI GATC 4 cut(s) 109, 166, 316, 393
Sau96I GGNCC 2 cut(s) 336, 525
ScrFI CCNGG 2 cut(s) 339, 340
SduI GDGCHC 1 cut(s) 164
SfaNI GCATC 1 cut(s) 316
SmaI CCCGGG 1 cut(s) 340
SmiMI CAYNNNNRTG 1 cut(s) 447
SmlI CTYRAG 1 cut(s) 41
SmoI CTYRAG 1 cut(s) 41
SphI GCATGC 1 cut(s) 176
Sse9I AATT 2 cut(s) 48, 529
SsiI CCGC 3 cut(s) 23, 248, 510
SspMI CTAG 4 cut(s) 147, 210, 297, 314
StyD4I CCNGG 2 cut(s) 337, 338
StyI CCWWGG 1 cut(s) 296
TaaI ACNGT 2 cut(s) 188, 522
TaiI ACGT 1 cut(s) 597
TaqI TCGA 3 cut(s) 180, 396, 579
TasI AATT 2 cut(s) 48, 529
TfiI GAWTC 1 cut(s) 548
Tru1I TTAA 3 cut(s) 42, 279, 332
Tru9I TTAA 3 cut(s) 42, 279, 332
TscAI CASTG 1 cut(s) 433
TseFI GTSAC 1 cut(s) 202
TseI GCWGC 1 cut(s) 462
Tsp45I GTSAC 1 cut(s) 202
TspDTI ATGAA 2 cut(s) 17, 575
TspGWI ACGGA 1 cut(s) 179
TspMI CCCGGG 1 cut(s) 338
TspRI CASTG 1 cut(s) 433
Vha464I CTTAAG 1 cut(s) 41
VspI ATTAAT 1 cut(s) 279
XbaI TCTAGA 2 cut(s) 146, 313
XceI RCATGY 1 cut(s) 176
XmaI CCCGGG 1 cut(s) 338
XmaJI CCTAGG 1 cut(s) 296
XspI CTAG 4 cut(s) 147, 210, 297, 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.