Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0020577

Physical Location & Seq

Genomic Coordinates Reverse (-)

31712449 .. 31718142

Gene Structure 5694 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG179900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGCATGGCGTACACAATTTCTTTGTGACATTCATTGAAGAACTACAAGATAGGCCTCCTGGTCATGATTGGGAGCTTGAACCAGGTGTCACATGTGGTGACTACCTATTTGGAATGCTACAGGGAACACGATCGGCTCTTTATTCTAATGACCGAGAGTCGCTTACGGTTTCTGTGGAAGAAGTGACACCTAGATCTGTAGGTGCTCTTATAGCTCTTTATGAGAAAGCGGTTGGAATTTACGCCTCGCTTGTCAACATTAATGCTTACCATCAACTTGGGAGTAAGCATCTTCTAGAGATGAATAGGATTTTAAGGCCCGGGGGATACTTTATCTTGTCAACTAAACATGACAGCTTTGATGCTGAAGAAGGAGAAGGCACCGGCAAAGGTTACGGCGGTAGCCACGGAGACCATAGCTGCTATAGACCGTTTTTTGAATTTGGTCAAGGACAGTTGTGCGGGCCCGGTTTACTTACAAAAACATACAAGCCCAAGCCAAGTTATGTTGATCTGCATTTCGATAGGACCATGCCTATGTTTGATTCCAACATGTTAGGGGAAGACTCGTATCAACCTCTTCCAGAGGTGGTTGGGGAATCCGATCCACGATTTTCCTCTGGCAAAATGTCAACTATTCCTTCAATTCTGCTTTTGGTTACCGGATCTGCTGCTATCGCTGGGTTGGTTACTATCCCATTACATTCTCCAACTGACCCTCCGCGAGTTACTCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004347 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0005982 GO:0006073 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009909 GO:0009911 GO:0009941 GO:0009987 GO:0016853 GO:0016860 GO:0016861 GO:0031967 GO:0031975 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048518 GO:0048580 GO:0048582 GO:0048831 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0065007 GO:0071704 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

ko00010 ko00030 ko00500 ko00520 ko01100 ko01110 ko01120 ko01130 ko01200 map00010 map00030 map00500 map00520 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

PGI

Protein Analysis

245

Amino Acids

26.86

Weight (kDa)

5.29

Isoelectric Point (pI)

43.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PGI	PF00342	47 - 95	1.3e-06	Phosphoglucose isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020577)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0272701
rosa_roxburghii	Rroxscaffold_1G00020820 Rroxscaffold_5G00359980
rosa_rugosa	Rorug05G0199500
rosa_samantha	Rh6DG179900
rosa_wichuraiana	Rw7G031230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	380
AccII	CGCG	1 cut(s)	724
AciI	CCGC	4 cut(s)	230, 399, 462, 722
AclWI	GGATC	2 cut(s)	599, 673
AcsI	RAATTY	2 cut(s)	237, 440
AcuI	CTGAAG	1 cut(s)	387
AfaI	GTAC	1 cut(s)	12
AflIII	ACRYGT	2 cut(s)	92, 552
AgsI	TTSAA	4 cut(s)	38, 80, 440, 645
AhdI	GACNNNNNGTC	1 cut(s)	157
AjnI	CCWGG	2 cut(s)	58, 82
AluBI	AGCT	4 cut(s)	76, 215, 357, 420
AluI	AGCT	4 cut(s)	76, 215, 357, 420
Alw21I	GWGCWC	1 cut(s)	208
Alw26I	GTCTC	1 cut(s)	405
AlwI	GGATC	2 cut(s)	599, 673
Ama87I	CYCGRG	1 cut(s)	320
AoxI	GGCC	3 cut(s)	53, 317, 464
ApaI	GGGCCC	1 cut(s)	468
ApeKI	GCWGC	2 cut(s)	420, 671
ApoI	RAATTY	2 cut(s)	237, 440
ArsI	GACNNNNNNTTYG	2 cut(s)	92, 124
AseI	ATTAAT	1 cut(s)	261
AspS9I	GGNCC	4 cut(s)	318, 464, 465, 528
AsuC2I	CCSGG	3 cut(s)	321, 322, 468
AsuHPI	GGTGA	1 cut(s)	110
AvaI	CYCGRG	1 cut(s)	320
AvaII	GGWCC	1 cut(s)	528
BaeGI	GKGCMC	1 cut(s)	468
BanI	GGYRCC	1 cut(s)	380
BanII	GRGCYC	1 cut(s)	468
BbsI	GAAGAC	1 cut(s)	570
Bbv12I	GWGCWC	1 cut(s)	208
BbvI	GCAGC	2 cut(s)	407, 658
BccI	CCATC	1 cut(s)	279
BceAI	ACGGC	1 cut(s)	412
BciT130I	CCWGG	2 cut(s)	60, 84
BciVI	GTATCC	1 cut(s)	320
BcnI	CCSGG	3 cut(s)	321, 322, 468
BcoDI	GTCTC	1 cut(s)	405
BfaI	CTAG	2 cut(s)	192, 296
BfmI	CTRYAG	3 cut(s)	119, 198, 424
BfuI	GTATCC	1 cut(s)	320
BglII	AGATCT	1 cut(s)	194
BisI	GCNGC	2 cut(s)	421, 672
BlsI	GCNGC	2 cut(s)	422, 673
Bme1390I	CCNGG	5 cut(s)	60, 84, 321, 322, 468
Bme18I	GGWCC	1 cut(s)	528
BmeRI	GACNNNNNGTC	1 cut(s)	157
BmeT110I	CYCGRG	1 cut(s)	320
BmgT120I	GGNCC	4 cut(s)	318, 464, 465, 528
BmiI	GGNNCC	2 cut(s)	382, 466
BmrFI	CCNGG	5 cut(s)	60, 84, 321, 322, 468
BmsI	GCATC	2 cut(s)	298, 352
BpiI	GAAGAC	1 cut(s)	570
BpuMI	CCSGG	3 cut(s)	321, 322, 468
BsaI	GGTCTC	1 cut(s)	405
BsaJI	CCNNGG	3 cut(s)	320, 321, 406
BsaWI	WCCGGW	1 cut(s)	662
BsaXI	ACNNNNNCTCC	2 cut(s)	703, 733
Bse118I	RCCGGY	1 cut(s)	383
BseBI	CCWGG	2 cut(s)	60, 84
BseDI	CCNNGG	3 cut(s)	320, 321, 406
BseSI	GKGCMC	1 cut(s)	468
BseXI	GCAGC	2 cut(s)	407, 658
BseYI	CCCAGC	1 cut(s)	680
Bsh1236I	CGCG	1 cut(s)	724
Bsh1285I	CGRYCG	1 cut(s)	134
BshFI	GGCC	3 cut(s)	55, 319, 466
BshNI	GGYRCC	1 cut(s)	380
BsiEI	CGRYCG	1 cut(s)	134
BsiHKAI	GWGCWC	1 cut(s)	208
BsiHKCI	CYCGRG	1 cut(s)	320
BsiSI	CCGG	4 cut(s)	321, 384, 468, 663
BsmAI	GTCTC	1 cut(s)	405
BsmI	GAATGC	1 cut(s)	120
BsnI	GGCC	3 cut(s)	55, 319, 466
Bso31I	GGTCTC	1 cut(s)	405
BsoBI	CYCGRG	1 cut(s)	320
Bsp120I	GGGCCC	1 cut(s)	464
Bsp1286I	GDGCHC	2 cut(s)	208, 468
Bsp143I	GATC	5 cut(s)	131, 194, 511, 604, 665
BspACI	CCGC	4 cut(s)	230, 399, 462, 722
BspANI	GGCC	3 cut(s)	55, 319, 466
BspFNI	CGCG	1 cut(s)	724
BspHI	TCATGA	1 cut(s)	64
BspLI	GGNNCC	2 cut(s)	382, 466
BspPI	GGATC	2 cut(s)	599, 673
BspT107I	GGYRCC	1 cut(s)	380
BspTNI	GGTCTC	1 cut(s)	405
BsrFI	RCCGGY	1 cut(s)	383
BssAI	RCCGGY	1 cut(s)	383
BssECI	CCNNGG	3 cut(s)	320, 321, 406
BssMI	GATC	5 cut(s)	131, 194, 511, 604, 665
Bst2UI	CCWGG	2 cut(s)	60, 84
Bst4CI	ACNGT	3 cut(s)	169, 432, 456
Bst6I	CTCTTC	1 cut(s)	585
BstC8I	GCNNGC	1 cut(s)	464
BstDSI	CCRYGG	1 cut(s)	406
BstEII	GGTNACC	1 cut(s)	658
BstFNI	CGCG	1 cut(s)	724
BstKTI	GATC	5 cut(s)	134, 197, 514, 607, 668
BstMAI	GTCTC	1 cut(s)	405
BstMBI	GATC	5 cut(s)	131, 194, 511, 604, 665
BstMCI	CGRYCG	1 cut(s)	134
BstMWI	GCNNNNNNNGC	2 cut(s)	212, 677
BstNI	CCWGG	2 cut(s)	60, 84
BstNSI	RCATGY	2 cut(s)	96, 556
BstPI	GGTNACC	1 cut(s)	658
BstSCI	CCNGG	5 cut(s)	58, 82, 319, 320, 466
BstSFI	CTRYAG	3 cut(s)	119, 198, 424
BstSLI	GKGCMC	1 cut(s)	468
BstUI	CGCG	1 cut(s)	724
BstV1I	GCAGC	2 cut(s)	407, 658
BstV2I	GAAGAC	1 cut(s)	570
BstX2I	RGATCY	2 cut(s)	194, 665
BstXI	CCANNNNNNTGG	1 cut(s)	278
BstYI	RGATCY	2 cut(s)	194, 665
BsuI	GTATCC	1 cut(s)	320
BsuRI	GGCC	3 cut(s)	55, 319, 466
BtgI	CCRYGG	1 cut(s)	406
Cac8I	GCNNGC	1 cut(s)	464
CciI	TCATGA	1 cut(s)	64
Cfr10I	RCCGGY	1 cut(s)	383
Cfr13I	GGNCC	4 cut(s)	318, 464, 465, 528
Cfr9I	CCCGGG	1 cut(s)	320
CsiI	ACCWGGT	1 cut(s)	82
Csp6I	GTAC	1 cut(s)	11
CviAII	CATG	7 cut(s)	5, 65, 93, 350, 532, 553, 735
CviQI	GTAC	1 cut(s)	11
DpnI	GATC	5 cut(s)	133, 196, 513, 606, 667
DpnII	GATC	5 cut(s)	131, 194, 511, 604, 665
DriI	GACNNNNNGTC	1 cut(s)	157
Eam1104I	CTCTTC	1 cut(s)	585
Eam1105I	GACNNNNNGTC	1 cut(s)	157
EarI	CTCTTC	1 cut(s)	585
Eco147I	AGGCCT	1 cut(s)	55
Eco24I	GRGCYC	1 cut(s)	468
Eco31I	GGTCTC	1 cut(s)	405
Eco47I	GGWCC	1 cut(s)	528
Eco57I	CTGAAG	1 cut(s)	387
Eco88I	CYCGRG	1 cut(s)	320
Eco91I	GGTNACC	1 cut(s)	658
EcoO65I	GGTNACC	1 cut(s)	658
EcoRII	CCWGG	2 cut(s)	58, 82
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	468
FaeI	CATG	7 cut(s)	8, 68, 96, 353, 535, 556, 738
FatI	CATG	7 cut(s)	4, 64, 92, 349, 531, 552, 734
FauI	CCCGC	1 cut(s)	455
Fnu4HI	GCNGC	2 cut(s)	421, 672
FriOI	GRGCYC	1 cut(s)	468
Fsp4HI	GCNGC	2 cut(s)	421, 672
FspBI	CTAG	2 cut(s)	192, 296
GluI	GCNGC	2 cut(s)	421, 672
GsaI	CCCAGC	1 cut(s)	684
HaeIII	GGCC	3 cut(s)	55, 319, 466
HapII	CCGG	4 cut(s)	321, 384, 468, 663
Hin1II	CATG	7 cut(s)	8, 68, 96, 353, 535, 556, 738
HincII	GTYRAC	3 cut(s)	256, 342, 633
HindII	GTYRAC	3 cut(s)	256, 342, 633
HinfI	GANTC	4 cut(s)	158, 545, 566, 599
HpaII	CCGG	4 cut(s)	321, 384, 468, 663
HphI	GGTGA	1 cut(s)	110
Hpy166II	GTNNAC	5 cut(s)	13, 256, 342, 473, 633
Hpy188I	TCNGA	1 cut(s)	604
Hpy188III	TCNNGA	3 cut(s)	65, 296, 584
Hpy8I	GTNNAC	5 cut(s)	13, 256, 342, 473, 633
HpyAV	CCTTC	3 cut(s)	365, 371, 651
HpyCH4III	ACNGT	3 cut(s)	169, 432, 456
HpyCH4V	TGCA	2 cut(s)	4, 517
HpyF10VI	GCNNNNNNNGC	2 cut(s)	212, 677
Hsp92II	CATG	7 cut(s)	8, 68, 96, 353, 535, 556, 738
Kzo9I	GATC	5 cut(s)	131, 194, 511, 604, 665
LmnI	GCTCC	1 cut(s)	73
Lsp1109I	GCAGC	2 cut(s)	407, 658
LweI	GCATC	2 cut(s)	298, 352
MabI	ACCWGGT	1 cut(s)	82
MaeI	CTAG	2 cut(s)	192, 296
MaeIII	GTNAC	8 cut(s)	25, 88, 98, 184, 392, 658, 688, 727
MalI	GATC	5 cut(s)	133, 196, 513, 606, 667
MboI	GATC	5 cut(s)	131, 194, 511, 604, 665
MboII	GAAGA	6 cut(s)	50, 191, 284, 380, 572, 575
MflI	RGATCY	2 cut(s)	194, 665
MhlI	GDGCHC	2 cut(s)	208, 468
MluCI	AATT	4 cut(s)	16, 237, 440, 645
MlyI	GAGTC	2 cut(s)	167, 560
MmeI	TCCRAC	3 cut(s)	214, 573, 734
MnlI	CCTC	6 cut(s)	66, 256, 580, 588, 628, 729
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	2 cut(s)	261, 314
MslI	CAYNNNNRTG	1 cut(s)	536
MspI	CCGG	4 cut(s)	321, 384, 468, 663
MspR9I	CCNGG	5 cut(s)	60, 84, 321, 322, 468
Mva1269I	GAATGC	1 cut(s)	120
MvaI	CCWGG	2 cut(s)	60, 84
MvnI	CGCG	1 cut(s)	724
MwoI	GCNNNNNNNGC	2 cut(s)	212, 677
NciI	CCSGG	3 cut(s)	321, 322, 468
NdeII	GATC	5 cut(s)	131, 194, 511, 604, 665
NlaIII	CATG	7 cut(s)	8, 68, 96, 353, 535, 556, 738
NlaIV	GGNNCC	2 cut(s)	382, 466
NmuCI	GTSAC	4 cut(s)	25, 88, 98, 184
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	2 cut(s)	96, 556
PagI	TCATGA	1 cut(s)	64
PceI	AGGCCT	1 cut(s)	55
PciI	ACATGT	2 cut(s)	92, 552
PctI	GAATGC	1 cut(s)	120
PfeI	GAWTC	2 cut(s)	545, 599
PkrI	GCNGC	2 cut(s)	422, 673
Ple19I	CGATCG	1 cut(s)	134
PleI	GAGTC	2 cut(s)	166, 560
PpsI	GAGTC	2 cut(s)	166, 560
PscI	ACATGT	2 cut(s)	92, 552
PshBI	ATTAAT	1 cut(s)	261
Psp6I	CCWGG	2 cut(s)	58, 82
PspEI	GGTNACC	1 cut(s)	658
PspFI	CCCAGC	1 cut(s)	680
PspGI	CCWGG	2 cut(s)	58, 82
PspN4I	GGNNCC	2 cut(s)	382, 466
PspOMI	GGGCCC	1 cut(s)	464
PspPI	GGNCC	4 cut(s)	318, 464, 465, 528
PsuI	RGATCY	2 cut(s)	194, 665
PvuI	CGATCG	1 cut(s)	134
RsaI	GTAC	1 cut(s)	12
RsaNI	GTAC	1 cut(s)	11
RseI	CAYNNNNRTG	1 cut(s)	536
SaqAI	TTAA	2 cut(s)	261, 314
SatI	GCNGC	2 cut(s)	421, 672
Sau3AI	GATC	5 cut(s)	131, 194, 511, 604, 665
Sau96I	GGNCC	4 cut(s)	318, 464, 465, 528
SchI	GAGTC	2 cut(s)	167, 560
ScrFI	CCNGG	5 cut(s)	60, 84, 321, 322, 468
SduI	GDGCHC	2 cut(s)	208, 468
SexAI	ACCWGGT	1 cut(s)	82
SfaNI	GCATC	2 cut(s)	298, 352
SfcI	CTRYAG	3 cut(s)	119, 198, 424
SinI	GGWCC	1 cut(s)	528
SmaI	CCCGGG	1 cut(s)	322
SmiMI	CAYNNNNRTG	1 cut(s)	536
Sse9I	AATT	4 cut(s)	16, 237, 440, 645
SseBI	AGGCCT	1 cut(s)	55
SsiI	CCGC	4 cut(s)	230, 399, 462, 722
SspMI	CTAG	2 cut(s)	192, 296
StuI	AGGCCT	1 cut(s)	55
StyD4I	CCNGG	5 cut(s)	58, 82, 319, 320, 466
TaaI	ACNGT	3 cut(s)	169, 432, 456
TaqI	TCGA	1 cut(s)	522
TaqII	GACCGA	1 cut(s)	168
TasI	AATT	4 cut(s)	16, 237, 440, 645
TfiI	GAWTC	2 cut(s)	545, 599
Tru1I	TTAA	2 cut(s)	261, 314
Tru9I	TTAA	2 cut(s)	261, 314
TseFI	GTSAC	4 cut(s)	25, 88, 98, 184
TseI	GCWGC	2 cut(s)	420, 671
Tsp45I	GTSAC	4 cut(s)	25, 88, 98, 184
TspDTI	ATGAA	2 cut(s)	22, 317
TspGWI	ACGGA	1 cut(s)	423
TspMI	CCCGGG	1 cut(s)	320
VpaK11BI	GGWCC	1 cut(s)	528
VspI	ATTAAT	1 cut(s)	261
XapI	RAATTY	2 cut(s)	237, 440
XbaI	TCTAGA	1 cut(s)	295
XceI	RCATGY	2 cut(s)	96, 556
XmaI	CCCGGG	1 cut(s)	320
XspI	CTAG	2 cut(s)	192, 296
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.