RchiOBHm_Chr6g0290831

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0015916
Physical Location & Seq
Forward (+)
53801495 .. 53803051
1557 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 510 bp
ATGGGGACTCTCTCTCTCTTCCCTACTTCTCTCTATGGTCCTCTGCGAACCCATCTCTCATCTTCAAAAACCCATCTCTGCAACTCCGTTTTCTTGCCACACGTCTCTGTAACTTATCCTCAACAAAGACGTTTTCGCAGCAAGAATGTTGTTTTCGGTAGCAAATCAGTTGATCCAAAGGAGTCCCAGTTCTTTGATGAAGATGGAGCTGTGGATGACATGGATGGCTACATGAACTACCTTTCTCTTGAATATGACTCCGTTTGGGACACTAAACCTTCCTGGTGCCAACCATGGACAATTACACTGACCGGAGCGCTCGTGATTGCGTTTAGCTGGTTGATTTTGCACTCAGTATTAGCCACAGGCGTTGTAGTCTTCCTAATTGGTTTATGGTGGTACATCTTTCTGTATTCATACCCAAAGGCGTATGCAGATATGATTGCCGAGCGGAGGAAGAGGGTGTCCAACGGTGTTGAAGACACCTTTGGAATGGGGGAGACGCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

169

Amino Acids

19.3

Weight (kDa)

6.4

Isoelectric Point (pI)

36.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF6737 PF20522 87 - 143 8.2e-27 Domain of unknown function (DUF6737)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015916)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02725 AT4G02725
fragaria_vesca FvH4_2g23371
malus_domestica MD11G1284000.v1.1
prunus_persica Prupe.8G239600_v2.0.a1
pyrus_communis pycom11g25150
rosa_chinensis RchiOBHm_Chr6g0290831
rosa_laevigata RLG00000012170
rosa_multiflora Rmu_sc0009276.1_g000008
rosa_roxburghii Rroxscaffold_7G00176680
rosa_rugosa Rorug06G0215000
rosa_samantha Rh6AG325600 Rh6BG333300 Rh6CG339000
rosa_wichuraiana Rw6G028310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 285
AccBSI CCGCTC 1 cut(s) 451
AccII CGCG 1 cut(s) 505
AciI CCGC 2 cut(s) 451, 505
AclWI GGATC 1 cut(s) 167
AfaI GTAC 1 cut(s) 401
AfeI AGCGCT 1 cut(s) 318
AfiI CCNNNNNNNGG 1 cut(s) 453
AflIII ACRYGT 1 cut(s) 100
AgsI TTSAA 3 cut(s) 66, 251, 479
AjiI CACGTC 1 cut(s) 103
AjnI CCWGG 1 cut(s) 281
AjuI GAANNNNNNNTTGG 2 cut(s) 471, 503
AloI GAACNNNNNNTCC 2 cut(s) 173, 205
AluBI AGCT 2 cut(s) 209, 336
AluI AGCT 2 cut(s) 209, 336
Alw26I GTCTC 2 cut(s) 109, 494
AlwI GGATC 1 cut(s) 167
Aor51HI AGCGCT 1 cut(s) 318
ApeKI GCWGC 1 cut(s) 138
AspLEI GCGC 1 cut(s) 319
AspS9I GGNCC 1 cut(s) 38
AvaII GGWCC 1 cut(s) 38
BanI GGYRCC 1 cut(s) 285
BauI CACGAG 1 cut(s) 320
BbsI GAAGAC 2 cut(s) 370, 486
BbvI GCAGC 1 cut(s) 150
BccI CCATC 4 cut(s) 60, 81, 197, 218
BciT130I CCWGG 1 cut(s) 283
BcoDI GTCTC 2 cut(s) 109, 494
BfoI RGCGCY 1 cut(s) 320
BisI GCNGC 1 cut(s) 139
BlsI GCNGC 1 cut(s) 140
Bme1390I CCNGG 1 cut(s) 283
Bme18I GGWCC 1 cut(s) 38
BmgBI CACGTC 1 cut(s) 103
BmgT120I GGNCC 1 cut(s) 38
BmiI GGNNCC 1 cut(s) 287
BmrFI CCNGG 1 cut(s) 283
BmrI ACTGGG 1 cut(s) 181
BmuI ACTGGG 1 cut(s) 181
BpiI GAAGAC 2 cut(s) 370, 486
BsaJI CCNNGG 1 cut(s) 293
BsaWI WCCGGW 1 cut(s) 311
BsaXI ACNNNNNCTCC 5 cut(s) 173, 203, 306, 336, 491
Bsc4I CCNNNNNNNGG 1 cut(s) 453
Bse1I ACTGG 1 cut(s) 187
BseBI CCWGG 1 cut(s) 283
BseDI CCNNGG 1 cut(s) 293
BseGI GGATG 2 cut(s) 220, 229
BseLI CCNNNNNNNGG 1 cut(s) 453
BseMII CTCAG 1 cut(s) 366
BseNI ACTGG 1 cut(s) 187
BseXI GCAGC 1 cut(s) 150
Bsh1236I CGCG 1 cut(s) 505
BshNI GGYRCC 1 cut(s) 285
BsiSI CCGG 1 cut(s) 312
BslFI GGGAC 3 cut(s) 19, 169, 281
BslI CCNNNNNNNGG 1 cut(s) 453
BsmAI GTCTC 2 cut(s) 109, 494
BsmBI CGTCTC 2 cut(s) 109, 494
BsmFI GGGAC 3 cut(s) 19, 169, 281
Bsp143I GATC 1 cut(s) 172
Bsp19I CCATGG 1 cut(s) 293
BspACI CCGC 2 cut(s) 451, 505
BspCNI CTCAG 1 cut(s) 365
BspFNI CGCG 1 cut(s) 505
BspLI GGNNCC 1 cut(s) 287
BspPI GGATC 1 cut(s) 167
BspT107I GGYRCC 1 cut(s) 285
BsrBI CCGCTC 1 cut(s) 451
BsrI ACTGG 1 cut(s) 187
BssECI CCNNGG 1 cut(s) 293
BssMI GATC 1 cut(s) 172
BssSI CACGAG 1 cut(s) 320
BssT1I CCWWGG 1 cut(s) 293
Bst2BI CACGAG 1 cut(s) 320
Bst2UI CCWGG 1 cut(s) 283
Bst4CI ACNGT 1 cut(s) 473
Bst6I CTCTTC 2 cut(s) 23, 452
BstDEI CTNAG 1 cut(s) 352
BstDSI CCRYGG 1 cut(s) 293
BstF5I GGATG 2 cut(s) 220, 229
BstFNI CGCG 1 cut(s) 505
BstH2I RGCGCY 1 cut(s) 320
BstHHI GCGC 1 cut(s) 319
BstKTI GATC 1 cut(s) 175
BstMAI GTCTC 2 cut(s) 109, 494
BstMBI GATC 1 cut(s) 172
BstNI CCWGG 1 cut(s) 283
BstSCI CCNGG 1 cut(s) 281
BstUI CGCG 1 cut(s) 505
BstV1I GCAGC 1 cut(s) 150
BstV2I GAAGAC 2 cut(s) 370, 486
BtgI CCRYGG 1 cut(s) 293
BtrI CACGTC 1 cut(s) 103
BtsCI GGATG 2 cut(s) 220, 229
BtsIMutI CAGTG 1 cut(s) 305
CfoI GCGC 1 cut(s) 319
Cfr13I GGNCC 1 cut(s) 38
Csp6I GTAC 1 cut(s) 400
CspCI CAANNNNNGTGG 2 cut(s) 352, 387
CviAII CATG 3 cut(s) 220, 232, 294
CviJI RGCY 4 cut(s) 209, 228, 336, 362
CviKI_1 RGCY 4 cut(s) 209, 228, 336, 362
CviQI GTAC 1 cut(s) 400
DdeI CTNAG 1 cut(s) 352
DpnI GATC 1 cut(s) 174
DpnII GATC 1 cut(s) 172
Eam1104I CTCTTC 2 cut(s) 23, 452
EarI CTCTTC 2 cut(s) 23, 452
Eco130I CCWWGG 1 cut(s) 293
Eco47I GGWCC 1 cut(s) 38
Eco47III AGCGCT 1 cut(s) 318
EcoRII CCWGG 1 cut(s) 281
EcoT14I CCWWGG 1 cut(s) 293
ErhI CCWWGG 1 cut(s) 293
Esp3I CGTCTC 2 cut(s) 109, 494
FaeI CATG 3 cut(s) 223, 235, 297
FaiI YATR 9 cut(s) 36, 221, 233, 255, 295, 394, 418, 432, 440
FaqI GGGAC 3 cut(s) 19, 169, 281
FatI CATG 3 cut(s) 219, 231, 293
Fnu4HI GCNGC 1 cut(s) 139
FokI GGATG 2 cut(s) 227, 236
Fsp4HI GCNGC 1 cut(s) 139
GlaI GCGC 1 cut(s) 318
GluI GCNGC 1 cut(s) 139
HaeII RGCGCY 1 cut(s) 320
HapII CCGG 1 cut(s) 312
HhaI GCGC 1 cut(s) 319
Hin1II CATG 3 cut(s) 223, 235, 297
Hin6I GCGC 1 cut(s) 317
HinP1I GCGC 1 cut(s) 317
HinfI GANTC 3 cut(s) 7, 182, 257
HpaII CCGG 1 cut(s) 312
Hpy188III TCNNGA 2 cut(s) 248, 322
HpyAV CCTTC 1 cut(s) 288
HpyCH4III ACNGT 1 cut(s) 473
HpyCH4IV ACGT 2 cut(s) 102, 130
HpyCH4V TGCA 3 cut(s) 81, 349, 434
HpyF3I CTNAG 1 cut(s) 352
HpySE526I ACGT 2 cut(s) 102, 130
Hsp92II CATG 3 cut(s) 223, 235, 297
HspAI GCGC 1 cut(s) 317
Kzo9I GATC 1 cut(s) 172
LmnI GCTCC 2 cut(s) 206, 314
LpnPI CCDG 6 cut(s) 200, 268, 295, 322, 325, 351
Lsp1109I GCAGC 1 cut(s) 150
MaeII ACGT 2 cut(s) 102, 130
MaeIII GTNAC 1 cut(s) 109
MalI GATC 1 cut(s) 174
MbiI CCGCTC 1 cut(s) 451
MboI GATC 1 cut(s) 172
MboII GAAGA 6 cut(s) 10, 54, 212, 370, 469, 491
MluCI AATT 2 cut(s) 300, 384
MlyI GAGTC 2 cut(s) 191, 251
MmeI TCCRAC 1 cut(s) 492
MnlI CCTC 4 cut(s) 51, 129, 447, 453
MspI CCGG 1 cut(s) 312
MspR9I CCNGG 1 cut(s) 283
MvaI CCWGG 1 cut(s) 283
MvnI CGCG 1 cut(s) 505
NcoI CCATGG 1 cut(s) 293
NdeII GATC 1 cut(s) 172
NlaIII CATG 3 cut(s) 223, 235, 297
NlaIV GGNNCC 1 cut(s) 287
NmeAIII GCCGAG 1 cut(s) 472
PkrI GCNGC 1 cut(s) 140
PleI GAGTC 2 cut(s) 190, 251
PpsI GAGTC 2 cut(s) 190, 251
Psp6I CCWGG 1 cut(s) 281
PspGI CCWGG 1 cut(s) 281
PspN4I GGNNCC 1 cut(s) 287
PspPI GGNCC 1 cut(s) 38
RsaI GTAC 1 cut(s) 401
RsaNI GTAC 1 cut(s) 400
SatI GCNGC 1 cut(s) 139
Sau3AI GATC 1 cut(s) 172
Sau96I GGNCC 1 cut(s) 38
SchI GAGTC 2 cut(s) 191, 251
ScrFI CCNGG 1 cut(s) 283
SetI ASST 7 cut(s) 105, 133, 211, 243, 280, 338, 488
SinI GGWCC 1 cut(s) 38
Sse9I AATT 2 cut(s) 300, 384
SsiI CCGC 2 cut(s) 451, 505
StyD4I CCNGG 1 cut(s) 281
StyI CCWWGG 1 cut(s) 293
TaaI ACNGT 1 cut(s) 473
TaiI ACGT 2 cut(s) 105, 133
TasI AATT 2 cut(s) 300, 384
TscAI CASTG 1 cut(s) 312
TseI GCWGC 1 cut(s) 138
TspDTI ATGAA 3 cut(s) 213, 248, 405
TspGWI ACGGA 2 cut(s) 76, 250
TspRI CASTG 1 cut(s) 312
VpaK11BI GGWCC 1 cut(s) 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.