RchiOBHm_Chr6g0293211

ZINC FINGER protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0016399
Physical Location & Seq
Reverse (-)
55937470 .. 55939765
2296 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1179 bp
ATGCAGTGCAGTCAGACTGGAAGGCTCATCAGAAGACTTGCGGCACTAGGGAATACAAATGTGATTGTGGAACCATCTTTTCCAGATAGCTTTATCACCCACAGAGCCTTCTGTGACGCATTGGCAGAAGAAAACAACAAAGTAAACCACGGACTCATAATGAACAACAACATGGGGACCCATAACCAAATGCCTGATCACCTCATCTCCTCCATGCCGATGAACACCAACACCTCAATGGGAATCGGAGCTGGAGCAATCTCCGAATACAACAACTACGACCCGAAAAACCCTATGAAATCCCTCCCGGAGGATCTTGTCCCAATGCCGTTCAAGTCCATCATGAACACCAATCTCCCAGCCGGAGGAGGAATGTTTTCCAGCAGCTCCGGCTCGCTTTTCGGCGGCCCTAGAAGTGTCAACTCCTCCACCTCCTCCAGCCTCCAGCTCAGCTCCAACAACAGCTCGTCCGCCGGGTTCAACTACCTTCAAGACAGCAAAAACGGGTGCGGTGGAAGCCCTAATATAACCGGTTCGGCTCAAATGTCAGCCACTGCTTTGCTCCAGAAGGCAGCTCAAATGGGCGCCACCGCCAGCAACACTACTATAAACTCCCCCATGATGCAGAAGAGCTTCGTCACCAGCATGGCGGGCCCGGAGAACCACCACCTCCTCTCCACCAACTCAATCAGCAACGTCACTCGACCGCCGTACGATCACCACCCTCACTTCCAGCAAGTCCAACAACAGCTACCAGATCACCACCAGATGGTTGGGATGCACGGCTTCACCAACCAGCTCTTCGGTGACGCAAACGCCACTTCAGCTGCGAGCTCGGCGGCGATGAGTGACCGCATGGGGATGTTCAGTCAGGTGGTGTTTAACATGGGGAGTGGAGGCAGTCACGAGCAGAACCAGGCGTTGCTGAGGAACTTGGAGCAGCAGAGTTTCGGAGGGAGCGGCGGCGAAGGAGGGGATATGACTACGCTTGATCTCTTGGGGCTCGGCGGAGGAGGAGGAGCGAGGCCTCAGCCGCAGAATTTGCATGAGCAACATCAGCAGAGGTTGGACTTGGAAGCGATGAGCCAGCCGAGAATGCCAATGATGAACCCCTTCCACCAGCAACAGCAGCGCTCGCATGGCGACTCGCCGGTGGAAAGCAACCCGTTTGGAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C2H2

Protein Analysis

392

Amino Acids

41.86

Weight (kDa)

6.16

Isoelectric Point (pI)

53.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2CH-4th_BIRD-IDD PF22992 29 - 55 4.5e-11 BIRD-IDD transcription factor, fourth C2HC zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016399)

Species Orthologous Gene IDs
fragaria_vesca FvH4_c6g00070 FvH4_c6g00070
malus_domestica MD03G1283900.v1.1 MD11G1302300.v1.1
prunus_persica Prupe.8G255800_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0293211
rosa_laevigata RLG00000011968
rosa_multiflora Rmu_ssc0000162.1_g000019
rosa_roxburghii Rroxscaffold_7G00174350
rosa_rugosa Rorug06G0233400
rosa_samantha Rh6AG346100 Rh6BG353700 Rh6CG360100 Rh6DG346500
rosa_wichuraiana Rw6G030150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 584
AccB7I CCANNNNNTGG 1 cut(s) 769
AccBSI CCGCTC 1 cut(s) 960
AclWI GGATC 1 cut(s) 321
AcsI RAATTY 1 cut(s) 1039
AcuI CTGAAG 1 cut(s) 807
AcyI GRCGYC 1 cut(s) 585
AfaI GTAC 1 cut(s) 713
AfeI AGCGCT 1 cut(s) 1133
AfiI CCNNNNNNNGG 3 cut(s) 310, 365, 769
AgeI ACCGGT 1 cut(s) 530
AgsI TTSAA 3 cut(s) 334, 481, 491
AjnI CCWGG 1 cut(s) 915
AjuI GAANNNNNNNTTGG 2 cut(s) 785, 817
Alw21I GWGCWC 1 cut(s) 836
AlwI GGATC 1 cut(s) 321
AlwNI CAGNNNCTG 1 cut(s) 554
Aor51HI AGCGCT 1 cut(s) 1133
AoxI GGCC 3 cut(s) 406, 652, 1025
ApaI GGGCCC 1 cut(s) 656
ApeKI GCWGC 5 cut(s) 384, 572, 827, 940, 1129
ApoI RAATTY 1 cut(s) 1039
AsiGI ACCGGT 1 cut(s) 530
Asp700I GAANNNNTTC 3 cut(s) 376, 632, 1112
AspLEI GCGC 2 cut(s) 587, 1134
AspS9I GGNCC 4 cut(s) 177, 407, 652, 653
AsuC2I CCSGG 3 cut(s) 308, 475, 656
AsuHPI GGTGA 7 cut(s) 88, 191, 631, 710, 752, 781, 818
AvaII GGWCC 1 cut(s) 177
BaeGI GKGCMC 1 cut(s) 656
BanI GGYRCC 1 cut(s) 584
BanII GRGCYC 3 cut(s) 656, 836, 1005
BauI CACGAG 1 cut(s) 905
BbsI GAAGAC 1 cut(s) 40
Bbv12I GWGCWC 1 cut(s) 836
BbvCI CCTCAGC 2 cut(s) 926, 1029
BbvI GCAGC 5 cut(s) 396, 584, 814, 952, 1141
BccI CCATC 3 cut(s) 82, 347, 763
BceAI ACGGC 3 cut(s) 313, 694, 799
BciT130I CCWGG 1 cut(s) 917
BclI TGATCA 1 cut(s) 196
BcnI CCSGG 3 cut(s) 308, 475, 656
BfaI CTAG 2 cut(s) 47, 411
BfoI RGCGCY 2 cut(s) 588, 1135
BlpI GCTNAGC 1 cut(s) 449
Bme1390I CCNGG 4 cut(s) 308, 475, 656, 917
Bme18I GGWCC 1 cut(s) 177
BmgT120I GGNCC 4 cut(s) 177, 407, 652, 653
BmiI GGNNCC 5 cut(s) 72, 178, 179, 586, 654
BmrFI CCNGG 4 cut(s) 308, 475, 656, 917
BmsI GCATC 2 cut(s) 612, 768
BpiI GAAGAC 1 cut(s) 40
BpmI CTGGAG 4 cut(s) 273, 421, 428, 548
Bpu10I CCTNAGC 2 cut(s) 926, 1029
Bpu1102I GCTNAGC 1 cut(s) 449
BpuMI CCSGG 3 cut(s) 308, 475, 656
BsaHI GRCGYC 1 cut(s) 585
BsaJI CCNNGG 1 cut(s) 148
BsaWI WCCGGW 1 cut(s) 530
BsaXI ACNNNNNCTCC 4 cut(s) 191, 221, 659, 689
Bsc4I CCNNNNNNNGG 3 cut(s) 310, 365, 769
Bse118I RCCGGY 2 cut(s) 530, 1150
Bse1I ACTGG 1 cut(s) 22
BseBI CCWGG 1 cut(s) 917
BseDI CCNNGG 1 cut(s) 148
BseGI GGATG 2 cut(s) 783, 867
BseLI CCNNNNNNNGG 3 cut(s) 310, 365, 769
BseMII CTCAG 3 cut(s) 463, 917, 1043
BseNI ACTGG 1 cut(s) 22
BseRI GAGGAG 8 cut(s) 199, 381, 415, 424, 662, 1026, 1029, 1032
BseSI GKGCMC 1 cut(s) 656
BseXI GCAGC 5 cut(s) 396, 584, 814, 952, 1141
BseYI CCCAGC 1 cut(s) 358
BsgI GTGCAG 1 cut(s) 28
Bsh1285I CGRYCG 1 cut(s) 707
BshFI GGCC 3 cut(s) 408, 654, 1027
BshNI GGYRCC 1 cut(s) 584
BshTI ACCGGT 1 cut(s) 530
BsiEI CGRYCG 1 cut(s) 707
BsiHKAI GWGCWC 1 cut(s) 836
BsiSI CCGG 7 cut(s) 308, 363, 390, 474, 531, 656, 1151
BsiWI CGTACG 1 cut(s) 711
BslFI GGGAC 2 cut(s) 190, 305
BslI CCNNNNNNNGG 3 cut(s) 310, 365, 769
BsmFI GGGAC 2 cut(s) 190, 305
BsmI GAATGC 1 cut(s) 1101
BsnI GGCC 3 cut(s) 408, 654, 1027
Bsp120I GGGCCC 1 cut(s) 652
Bsp1286I GDGCHC 3 cut(s) 656, 836, 1005
Bsp143I GATC 5 cut(s) 196, 313, 715, 757, 991
Bsp1720I GCTNAGC 1 cut(s) 449
BspANI GGCC 3 cut(s) 408, 654, 1027
BspCNI CTCAG 3 cut(s) 462, 918, 1042
BspHI TCATGA 1 cut(s) 342
BspLI GGNNCC 5 cut(s) 72, 178, 179, 586, 654
BspPI GGATC 1 cut(s) 321
BspQI GCTCTTC 2 cut(s) 623, 806
BspT107I GGYRCC 1 cut(s) 584
BsrBI CCGCTC 1 cut(s) 960
BsrFI RCCGGY 2 cut(s) 530, 1150
BsrI ACTGG 1 cut(s) 22
BssAI RCCGGY 2 cut(s) 530, 1150
BssECI CCNNGG 1 cut(s) 148
BssMI GATC 5 cut(s) 196, 313, 715, 757, 991
BssNI GRCGYC 1 cut(s) 585
BssSI CACGAG 1 cut(s) 905
Bst2BI CACGAG 1 cut(s) 905
Bst2UI CCWGG 1 cut(s) 917
Bst6I CTCTTC 2 cut(s) 623, 806
BstACI GRCGYC 1 cut(s) 585
BstAPI GCANNNNNTGC 1 cut(s) 1042
BstC8I GCNNGC 6 cut(s) 395, 595, 652, 832, 1088, 1136
BstDEI CTNAG 3 cut(s) 449, 926, 1029
BstDSI CCRYGG 1 cut(s) 148
BstENI CCTNNNNNAGG 1 cut(s) 308
BstF5I GGATG 2 cut(s) 783, 867
BstH2I RGCGCY 2 cut(s) 588, 1135
BstHHI GCGC 2 cut(s) 587, 1134
BstKTI GATC 5 cut(s) 199, 316, 718, 760, 994
BstMBI GATC 5 cut(s) 196, 313, 715, 757, 991
BstMCI CGRYCG 1 cut(s) 707
BstNI CCWGG 1 cut(s) 917
BstSCI CCNGG 4 cut(s) 306, 473, 654, 915
BstSLI GKGCMC 1 cut(s) 656
BstV1I GCAGC 5 cut(s) 396, 584, 814, 952, 1141
BstV2I GAAGAC 1 cut(s) 40
BstX2I RGATCY 1 cut(s) 313
BstXI CCANNNNNNTGG 1 cut(s) 773
BstYI RGATCY 1 cut(s) 313
BsuRI GGCC 3 cut(s) 408, 654, 1027
BtgI CCRYGG 1 cut(s) 148
BtgZI GCGATG 2 cut(s) 857, 1094
BtsCI GGATG 2 cut(s) 783, 867
BtsI GCAGTG 2 cut(s) 11, 552
BtsIMutI CAGTG 2 cut(s) 11, 552
Cac8I GCNNGC 6 cut(s) 395, 595, 652, 832, 1088, 1136
CaiI CAGNNNCTG 1 cut(s) 554
CciI TCATGA 1 cut(s) 342
CfoI GCGC 2 cut(s) 587, 1134
Cfr10I RCCGGY 2 cut(s) 530, 1150
Cfr13I GGNCC 4 cut(s) 177, 407, 652, 653
CseI GACGC 2 cut(s) 125, 818
Csp6I GTAC 1 cut(s) 712
CspAI ACCGGT 1 cut(s) 530
CviAII CATG 9 cut(s) 172, 214, 343, 619, 646, 856, 886, 1046, 1139
CviQI GTAC 1 cut(s) 712
DdeI CTNAG 3 cut(s) 449, 926, 1029
DinI GGCGCC 1 cut(s) 586
DpnI GATC 5 cut(s) 198, 315, 717, 759, 993
DpnII GATC 5 cut(s) 196, 313, 715, 757, 991
Eam1104I CTCTTC 2 cut(s) 623, 806
EarI CTCTTC 2 cut(s) 623, 806
EciI GGCGGA 2 cut(s) 460, 1023
Ecl136II GAGCTC 1 cut(s) 834
Eco147I AGGCCT 1 cut(s) 1027
Eco24I GRGCYC 3 cut(s) 656, 836, 1005
Eco47I GGWCC 1 cut(s) 177
Eco47III AGCGCT 1 cut(s) 1133
Eco53kI GAGCTC 1 cut(s) 834
Eco57I CTGAAG 1 cut(s) 807
EcoICRI GAGCTC 1 cut(s) 834
EcoNI CCTNNNNNAGG 1 cut(s) 308
EcoO109I RGGNCCY 1 cut(s) 177
EcoRII CCWGG 1 cut(s) 915
EcoT38I GRGCYC 3 cut(s) 656, 836, 1005
EgeI GGCGCC 1 cut(s) 586
EheI GGCGCC 1 cut(s) 586
FaeI CATG 9 cut(s) 175, 217, 346, 622, 649, 859, 889, 1049, 1142
FaqI GGGAC 2 cut(s) 190, 305
FatI CATG 9 cut(s) 171, 213, 342, 618, 645, 855, 885, 1045, 1138
FauI CCCGC 1 cut(s) 643
FbaI TGATCA 1 cut(s) 196
FokI GGATG 2 cut(s) 790, 874
FriOI GRGCYC 3 cut(s) 656, 836, 1005
FspBI CTAG 2 cut(s) 47, 411
GlaI GCGC 2 cut(s) 586, 1133
GsaI CCCAGC 1 cut(s) 362
GsuI CTGGAG 4 cut(s) 273, 421, 428, 548
HaeII RGCGCY 2 cut(s) 588, 1135
HaeIII GGCC 3 cut(s) 408, 654, 1027
HapII CCGG 7 cut(s) 308, 363, 390, 474, 531, 656, 1151
HgaI GACGC 2 cut(s) 125, 818
HhaI GCGC 2 cut(s) 587, 1134
Hin1I GRCGYC 1 cut(s) 585
Hin1II CATG 9 cut(s) 175, 217, 346, 622, 649, 859, 889, 1049, 1142
Hin6I GCGC 2 cut(s) 585, 1132
HinP1I GCGC 2 cut(s) 585, 1132
HincII GTYRAC 1 cut(s) 421
HindII GTYRAC 1 cut(s) 421
HinfI GANTC 3 cut(s) 153, 243, 1145
HpaII CCGG 7 cut(s) 308, 363, 390, 474, 531, 656, 1151
HphI GGTGA 7 cut(s) 88, 191, 631, 710, 752, 781, 818
Hpy166II GTNNAC 2 cut(s) 145, 421
Hpy188I TCNGA 5 cut(s) 15, 32, 248, 265, 953
Hpy188III TCNNGA 5 cut(s) 83, 343, 491, 565, 905
Hpy8I GTNNAC 2 cut(s) 145, 421
HpyAV CCTTC 6 cut(s) 15, 118, 497, 562, 962, 1123
HpyCH4IV ACGT 1 cut(s) 696
HpyCH4V TGCA 5 cut(s) 4, 9, 625, 781, 1045
HpyF3I CTNAG 3 cut(s) 449, 926, 1029
HpySE526I ACGT 1 cut(s) 696
Hsp92I GRCGYC 1 cut(s) 585
Hsp92II CATG 9 cut(s) 175, 217, 346, 622, 649, 859, 889, 1049, 1142
HspAI GCGC 2 cut(s) 585, 1132
KasI GGCGCC 1 cut(s) 584
KflI GGGWCCC 1 cut(s) 177
Ksp22I TGATCA 1 cut(s) 196
Kzo9I GATC 5 cut(s) 196, 313, 715, 757, 991
LguI GCTCTTC 2 cut(s) 623, 806
LmnI GCTCC 8 cut(s) 248, 254, 392, 458, 567, 937, 957, 1019
Lsp1109I GCAGC 5 cut(s) 396, 584, 814, 952, 1141
LweI GCATC 2 cut(s) 612, 768
MaeI CTAG 2 cut(s) 47, 411
MaeII ACGT 1 cut(s) 696
MaeIII GTNAC 6 cut(s) 113, 637, 697, 806, 848, 902
MalI GATC 5 cut(s) 198, 315, 717, 759, 993
MbiI CCGCTC 1 cut(s) 960
MboI GATC 5 cut(s) 196, 313, 715, 757, 991
MboII GAAGA 4 cut(s) 45, 140, 640, 793
MflI RGATCY 1 cut(s) 313
MhlI GDGCHC 3 cut(s) 656, 836, 1005
MluCI AATT 1 cut(s) 1039
Mly113I GGCGCC 1 cut(s) 585
MlyI GAGTC 2 cut(s) 147, 1139
MmeI TCCRAC 3 cut(s) 480, 766, 1047
MroXI GAANNNNTTC 3 cut(s) 376, 632, 1112
MseI TTAA 1 cut(s) 882
MslI CAYNNNNRTG 4 cut(s) 218, 236, 644, 860
MspA1I CMGCKG 1 cut(s) 827
MspI CCGG 7 cut(s) 308, 363, 390, 474, 531, 656, 1151
MspR9I CCNGG 4 cut(s) 308, 475, 656, 917
Mva1269I GAATGC 1 cut(s) 1101
MvaI CCWGG 1 cut(s) 917
NarI GGCGCC 1 cut(s) 585
NciI CCSGG 3 cut(s) 308, 475, 656
NdeII GATC 5 cut(s) 196, 313, 715, 757, 991
NlaIII CATG 9 cut(s) 175, 217, 346, 622, 649, 859, 889, 1049, 1142
NlaIV GGNNCC 5 cut(s) 72, 178, 179, 586, 654
NmeAIII GCCGAG 3 cut(s) 815, 984, 1116
NmuCI GTSAC 6 cut(s) 113, 637, 697, 806, 848, 902
PagI TCATGA 1 cut(s) 342
PceI AGGCCT 1 cut(s) 1027
PciSI GCTCTTC 2 cut(s) 623, 806
PctI GAATGC 1 cut(s) 1101
PdmI GAANNNNTTC 3 cut(s) 376, 632, 1112
PfeI GAWTC 1 cut(s) 243
Pfl23II CGTACG 1 cut(s) 711
PflMI CCANNNNNTGG 1 cut(s) 769
PfoI TCCNGGA 1 cut(s) 306
PinAI ACCGGT 1 cut(s) 530
PleI GAGTC 2 cut(s) 147, 1139
PluTI GGCGCC 1 cut(s) 588
PpsI GAGTC 2 cut(s) 147, 1139
PpuMI RGGWCCY 1 cut(s) 177
Psp124BI GAGCTC 1 cut(s) 836
Psp5II RGGWCCY 1 cut(s) 177
Psp6I CCWGG 1 cut(s) 915
PspFI CCCAGC 1 cut(s) 358
PspGI CCWGG 1 cut(s) 915
PspLI CGTACG 1 cut(s) 711
PspN4I GGNNCC 5 cut(s) 72, 178, 179, 586, 654
PspOMI GGGCCC 1 cut(s) 652
PspPI GGNCC 4 cut(s) 177, 407, 652, 653
PspPPI RGGWCCY 1 cut(s) 177
PstNI CAGNNNCTG 1 cut(s) 554
PsuI RGATCY 1 cut(s) 313
PvuII CAGCTG 1 cut(s) 827
RsaI GTAC 1 cut(s) 713
RsaNI GTAC 1 cut(s) 712
RseI CAYNNNNRTG 4 cut(s) 218, 236, 644, 860
SacI GAGCTC 1 cut(s) 836
SapI GCTCTTC 2 cut(s) 623, 806
SaqAI TTAA 1 cut(s) 882
Sau3AI GATC 5 cut(s) 196, 313, 715, 757, 991
Sau96I GGNCC 4 cut(s) 177, 407, 652, 653
SchI GAGTC 2 cut(s) 147, 1139
ScrFI CCNGG 4 cut(s) 308, 475, 656, 917
SduI GDGCHC 3 cut(s) 656, 836, 1005
SfaNI GCATC 2 cut(s) 612, 768
SfoI GGCGCC 1 cut(s) 586
SgrAI CRCCGGYG 1 cut(s) 1150
SinI GGWCC 1 cut(s) 177
SmiMI CAYNNNNRTG 4 cut(s) 218, 236, 644, 860
Sse9I AATT 1 cut(s) 1039
SseBI AGGCCT 1 cut(s) 1027
SspDI GGCGCC 1 cut(s) 584
SspMI CTAG 2 cut(s) 47, 411
SstI GAGCTC 1 cut(s) 836
StuI AGGCCT 1 cut(s) 1027
StyD4I CCNGG 4 cut(s) 306, 473, 654, 915
TaiI ACGT 1 cut(s) 699
TaqI TCGA 1 cut(s) 703
TasI AATT 1 cut(s) 1039
TauI GCSGC 6 cut(s) 44, 408, 842, 963, 966, 1036
TfiI GAWTC 1 cut(s) 243
Tru1I TTAA 1 cut(s) 882
Tru9I TTAA 1 cut(s) 882
TscAI CASTG 1 cut(s) 559
TseFI GTSAC 6 cut(s) 113, 637, 697, 806, 848, 902
TseI GCWGC 5 cut(s) 384, 572, 827, 940, 1129
Tsp45I GTSAC 6 cut(s) 113, 637, 697, 806, 848, 902
TspDTI ATGAA 5 cut(s) 176, 236, 311, 359, 1121
TspGWI ACGGA 1 cut(s) 165
TspRI CASTG 1 cut(s) 559
Van91I CCANNNNNTGG 1 cut(s) 769
VpaK11BI GGWCC 1 cut(s) 177
XagI CCTNNNNNAGG 1 cut(s) 308
XapI RAATTY 1 cut(s) 1039
XcmI CCANNNNNNNNNTGG 2 cut(s) 235, 770
XmnI GAANNNNTTC 3 cut(s) 376, 632, 1112
XspI CTAG 2 cut(s) 47, 411
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.