Small nuclear RNA activating complex (SNAPc), subunit SNAP43
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr6g0296211 |
| rosa_roxburghii | Rroxscaffold_7G00178320 |
| rosa_samantha | Rh6AG371700 Rh6BG379600 Rh6CG384900 Rh6DG372100 |
| rosa_wichuraiana | Rw6G032390 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 52 |
| AccI | GTMKAC | 1 cut(s) | 188 |
| AccII | CGCG | 1 cut(s) | 200 |
| AcsI | RAATTY | 2 cut(s) | 158, 202 |
| AcyI | GRCGYC | 1 cut(s) | 49 |
| AgsI | TTSAA | 4 cut(s) | 99, 169, 208, 276 |
| AluBI | AGCT | 5 cut(s) | 175, 218, 289, 382, 388 |
| AluI | AGCT | 5 cut(s) | 175, 218, 289, 382, 388 |
| AoxI | GGCC | 1 cut(s) | 66 |
| ApeKI | GCWGC | 3 cut(s) | 382, 385, 388 |
| ApoI | RAATTY | 2 cut(s) | 158, 202 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 345 |
| AspS9I | GGNCC | 1 cut(s) | 67 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 17, 49 |
| BbsI | GAAGAC | 2 cut(s) | 261, 402 |
| BbvI | GCAGC | 3 cut(s) | 369, 375, 397 |
| BfmI | CTRYAG | 2 cut(s) | 383, 389 |
| BisI | GCNGC | 3 cut(s) | 383, 386, 389 |
| BlsI | GCNGC | 3 cut(s) | 384, 387, 390 |
| BmgT120I | GGNCC | 1 cut(s) | 67 |
| BmsI | GCATC | 1 cut(s) | 319 |
| BpiI | GAAGAC | 2 cut(s) | 261, 402 |
| BpmI | CTGGAG | 1 cut(s) | 437 |
| BpuEI | CTTGAG | 1 cut(s) | 161 |
| BsaHI | GRCGYC | 1 cut(s) | 49 |
| BseGI | GGATG | 2 cut(s) | 134, 334 |
| BseRI | GAGGAG | 1 cut(s) | 323 |
| BseXI | GCAGC | 3 cut(s) | 369, 375, 397 |
| Bsh1236I | CGCG | 1 cut(s) | 200 |
| BshFI | GGCC | 1 cut(s) | 68 |
| BslFI | GGGAC | 2 cut(s) | 36, 60 |
| BsmFI | GGGAC | 2 cut(s) | 36, 60 |
| BsnI | GGCC | 1 cut(s) | 68 |
| Bsp143I | GATC | 1 cut(s) | 412 |
| BspANI | GGCC | 1 cut(s) | 68 |
| BspFNI | CGCG | 1 cut(s) | 200 |
| BspMAI | CTGCAG | 2 cut(s) | 387, 393 |
| BssMI | GATC | 1 cut(s) | 412 |
| BssNI | GRCGYC | 1 cut(s) | 49 |
| BstACI | GRCGYC | 1 cut(s) | 49 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 89 |
| BstC8I | GCNNGC | 1 cut(s) | 81 |
| BstDEI | CTNAG | 1 cut(s) | 119 |
| BstF5I | GGATG | 2 cut(s) | 134, 334 |
| BstFNI | CGCG | 1 cut(s) | 200 |
| BstKTI | GATC | 1 cut(s) | 415 |
| BstMBI | GATC | 1 cut(s) | 412 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 89, 388 |
| BstSFI | CTRYAG | 2 cut(s) | 383, 389 |
| BstUI | CGCG | 1 cut(s) | 200 |
| BstV1I | GCAGC | 3 cut(s) | 369, 375, 397 |
| BstV2I | GAAGAC | 2 cut(s) | 261, 402 |
| BsuRI | GGCC | 1 cut(s) | 68 |
| BtsCI | GGATG | 2 cut(s) | 134, 334 |
| Cac8I | GCNNGC | 1 cut(s) | 81 |
| Cfr13I | GGNCC | 1 cut(s) | 67 |
| CviAII | CATG | 2 cut(s) | 141, 444 |
| CviJI | RGCY | 6 cut(s) | 68, 175, 218, 289, 382, 388 |
| CviKI_1 | RGCY | 6 cut(s) | 68, 175, 218, 289, 382, 388 |
| DdeI | CTNAG | 1 cut(s) | 119 |
| DpnI | GATC | 1 cut(s) | 414 |
| DpnII | GATC | 1 cut(s) | 412 |
| FaeI | CATG | 2 cut(s) | 144, 447 |
| FaiI | YATR | 6 cut(s) | 13, 77, 90, 142, 260, 445 |
| FaqI | GGGAC | 2 cut(s) | 36, 60 |
| FatI | CATG | 2 cut(s) | 140, 443 |
| FblI | GTMKAC | 1 cut(s) | 188 |
| Fnu4HI | GCNGC | 3 cut(s) | 383, 386, 389 |
| FokI | GGATG | 2 cut(s) | 121, 341 |
| Fsp4HI | GCNGC | 3 cut(s) | 383, 386, 389 |
| GluI | GCNGC | 3 cut(s) | 383, 386, 389 |
| GsuI | CTGGAG | 1 cut(s) | 437 |
| HaeIII | GGCC | 1 cut(s) | 68 |
| Hin1I | GRCGYC | 1 cut(s) | 49 |
| Hin1II | CATG | 2 cut(s) | 144, 447 |
| Hpy166II | GTNNAC | 1 cut(s) | 189 |
| Hpy188I | TCNGA | 1 cut(s) | 439 |
| Hpy188III | TCNNGA | 2 cut(s) | 276, 416 |
| Hpy8I | GTNNAC | 1 cut(s) | 189 |
| HpyCH4IV | ACGT | 1 cut(s) | 49 |
| HpyCH4V | TGCA | 5 cut(s) | 79, 317, 370, 385, 391 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 89, 388 |
| HpyF3I | CTNAG | 1 cut(s) | 119 |
| HpySE526I | ACGT | 1 cut(s) | 49 |
| Hsp92I | GRCGYC | 1 cut(s) | 49 |
| Hsp92II | CATG | 2 cut(s) | 144, 447 |
| Kzo9I | GATC | 1 cut(s) | 412 |
| LpnPI | CCDG | 3 cut(s) | 345, 377, 401 |
| Lsp1109I | GCAGC | 3 cut(s) | 369, 375, 397 |
| LweI | GCATC | 1 cut(s) | 319 |
| MaeII | ACGT | 1 cut(s) | 49 |
| MalI | GATC | 1 cut(s) | 414 |
| MboI | GATC | 1 cut(s) | 412 |
| MboII | GAAGA | 4 cut(s) | 16, 220, 266, 407 |
| MfeI | CAATTG | 1 cut(s) | 99 |
| MluCI | AATT | 3 cut(s) | 99, 158, 202 |
| MmeI | TCCRAC | 1 cut(s) | 402 |
| MnlI | CCTC | 6 cut(s) | 37, 64, 80, 120, 220, 301 |
| MroXI | GAANNNNTTC | 1 cut(s) | 345 |
| MseI | TTAA | 2 cut(s) | 18, 162 |
| MslI | CAYNNNNRTG | 1 cut(s) | 139 |
| MspA1I | CMGCKG | 2 cut(s) | 382, 388 |
| MunI | CAATTG | 1 cut(s) | 99 |
| MvnI | CGCG | 1 cut(s) | 200 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 89, 388 |
| NdeII | GATC | 1 cut(s) | 412 |
| NlaIII | CATG | 2 cut(s) | 144, 447 |
| PdmI | GAANNNNTTC | 1 cut(s) | 345 |
| PkrI | GCNGC | 3 cut(s) | 384, 387, 390 |
| PspPI | GGNCC | 1 cut(s) | 67 |
| PstI | CTGCAG | 2 cut(s) | 387, 393 |
| PvuII | CAGCTG | 2 cut(s) | 382, 388 |
| RseI | CAYNNNNRTG | 1 cut(s) | 139 |
| SaqAI | TTAA | 2 cut(s) | 18, 162 |
| SatI | GCNGC | 3 cut(s) | 383, 386, 389 |
| Sau3AI | GATC | 1 cut(s) | 412 |
| Sau96I | GGNCC | 1 cut(s) | 67 |
| SetI | ASST | 7 cut(s) | 52, 177, 220, 291, 384, 390, 410 |
| SfaNI | GCATC | 1 cut(s) | 319 |
| SfcI | CTRYAG | 2 cut(s) | 383, 389 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 139 |
| SmlI | CTYRAG | 1 cut(s) | 176 |
| SmoI | CTYRAG | 1 cut(s) | 176 |
| Sse9I | AATT | 3 cut(s) | 99, 158, 202 |
| TaiI | ACGT | 1 cut(s) | 52 |
| TaqI | TCGA | 1 cut(s) | 42 |
| TasI | AATT | 3 cut(s) | 99, 158, 202 |
| Tru1I | TTAA | 2 cut(s) | 18, 162 |
| Tru9I | TTAA | 2 cut(s) | 18, 162 |
| TseI | GCWGC | 3 cut(s) | 382, 385, 388 |
| TspDTI | ATGAA | 4 cut(s) | 17, 123, 267, 338 |
| XapI | RAATTY | 2 cut(s) | 158, 202 |
| XmiI | GTMKAC | 1 cut(s) | 188 |
| XmnI | GAANNNNTTC | 1 cut(s) | 345 |
| ZraI | GACGTC | 1 cut(s) | 50 |