Small nuclear RNA activating complex (SNAPc), subunit SNAP43
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr6g0296211 |
| rosa_roxburghii | Rroxscaffold_7G00178320 |
| rosa_samantha | Rh6AG371700 Rh6BG379600 Rh6CG384900 Rh6DG372100 |
| rosa_wichuraiana | Rw6G032390 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 1 cut(s) | 54 |
| AgsI | TTSAA | 2 cut(s) | 24, 120 |
| AluBI | AGCT | 3 cut(s) | 133, 226, 232 |
| AluI | AGCT | 3 cut(s) | 133, 226, 232 |
| ApeKI | GCWGC | 3 cut(s) | 226, 229, 232 |
| ApoI | RAATTY | 1 cut(s) | 54 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 189 |
| BbsI | GAAGAC | 2 cut(s) | 105, 246 |
| BbvI | GCAGC | 3 cut(s) | 213, 219, 241 |
| BfmI | CTRYAG | 2 cut(s) | 227, 233 |
| BisI | GCNGC | 3 cut(s) | 227, 230, 233 |
| BlsI | GCNGC | 3 cut(s) | 228, 231, 234 |
| BmsI | GCATC | 1 cut(s) | 163 |
| BpiI | GAAGAC | 2 cut(s) | 105, 246 |
| BpmI | CTGGAG | 1 cut(s) | 281 |
| BseGI | GGATG | 2 cut(s) | 59, 178 |
| BseRI | GAGGAG | 1 cut(s) | 167 |
| BseXI | GCAGC | 3 cut(s) | 213, 219, 241 |
| Bsp143I | GATC | 1 cut(s) | 256 |
| BspMAI | CTGCAG | 2 cut(s) | 231, 237 |
| BssMI | GATC | 1 cut(s) | 256 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 14 |
| BstC8I | GCNNGC | 1 cut(s) | 6 |
| BstDEI | CTNAG | 1 cut(s) | 44 |
| BstF5I | GGATG | 2 cut(s) | 59, 178 |
| BstKTI | GATC | 1 cut(s) | 259 |
| BstMBI | GATC | 1 cut(s) | 256 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 14, 232 |
| BstSFI | CTRYAG | 2 cut(s) | 227, 233 |
| BstV1I | GCAGC | 3 cut(s) | 213, 219, 241 |
| BstV2I | GAAGAC | 2 cut(s) | 105, 246 |
| BtsCI | GGATG | 2 cut(s) | 59, 178 |
| Cac8I | GCNNGC | 1 cut(s) | 6 |
| CviAII | CATG | 2 cut(s) | 66, 288 |
| CviJI | RGCY | 3 cut(s) | 133, 226, 232 |
| CviKI_1 | RGCY | 3 cut(s) | 133, 226, 232 |
| DdeI | CTNAG | 1 cut(s) | 44 |
| DpnI | GATC | 1 cut(s) | 258 |
| DpnII | GATC | 1 cut(s) | 256 |
| FaeI | CATG | 2 cut(s) | 69, 291 |
| FaiI | YATR | 4 cut(s) | 15, 67, 104, 289 |
| FatI | CATG | 2 cut(s) | 65, 287 |
| Fnu4HI | GCNGC | 3 cut(s) | 227, 230, 233 |
| FokI | GGATG | 2 cut(s) | 46, 185 |
| Fsp4HI | GCNGC | 3 cut(s) | 227, 230, 233 |
| GluI | GCNGC | 3 cut(s) | 227, 230, 233 |
| GsuI | CTGGAG | 1 cut(s) | 281 |
| Hin1II | CATG | 2 cut(s) | 69, 291 |
| Hpy188I | TCNGA | 1 cut(s) | 283 |
| Hpy188III | TCNNGA | 2 cut(s) | 120, 260 |
| HpyCH4V | TGCA | 6 cut(s) | 4, 75, 161, 214, 229, 235 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 14, 232 |
| HpyF3I | CTNAG | 1 cut(s) | 44 |
| Hsp92II | CATG | 2 cut(s) | 69, 291 |
| Kzo9I | GATC | 1 cut(s) | 256 |
| LpnPI | CCDG | 3 cut(s) | 189, 221, 245 |
| Lsp1109I | GCAGC | 3 cut(s) | 213, 219, 241 |
| LweI | GCATC | 1 cut(s) | 163 |
| MalI | GATC | 1 cut(s) | 258 |
| MboI | GATC | 1 cut(s) | 256 |
| MboII | GAAGA | 2 cut(s) | 110, 251 |
| MfeI | CAATTG | 1 cut(s) | 24 |
| MluCI | AATT | 2 cut(s) | 24, 54 |
| MmeI | TCCRAC | 1 cut(s) | 246 |
| MnlI | CCTC | 1 cut(s) | 145 |
| MroXI | GAANNNNTTC | 1 cut(s) | 189 |
| MslI | CAYNNNNRTG | 1 cut(s) | 64 |
| MspA1I | CMGCKG | 2 cut(s) | 226, 232 |
| MunI | CAATTG | 1 cut(s) | 24 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 14, 232 |
| NdeII | GATC | 1 cut(s) | 256 |
| NlaIII | CATG | 2 cut(s) | 69, 291 |
| PdmI | GAANNNNTTC | 1 cut(s) | 189 |
| PkrI | GCNGC | 3 cut(s) | 228, 231, 234 |
| PstI | CTGCAG | 2 cut(s) | 231, 237 |
| PvuII | CAGCTG | 2 cut(s) | 226, 232 |
| RseI | CAYNNNNRTG | 1 cut(s) | 64 |
| SatI | GCNGC | 3 cut(s) | 227, 230, 233 |
| Sau3AI | GATC | 1 cut(s) | 256 |
| SetI | ASST | 4 cut(s) | 135, 228, 234, 254 |
| SfaNI | GCATC | 1 cut(s) | 163 |
| SfcI | CTRYAG | 2 cut(s) | 227, 233 |
| SgeI | CNNG | 9 cut(s) | 17, 78, 84, 132, 174, 216, 227, 248, 272 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 64 |
| Sse9I | AATT | 2 cut(s) | 24, 54 |
| TasI | AATT | 2 cut(s) | 24, 54 |
| TseI | GCWGC | 3 cut(s) | 226, 229, 232 |
| TspDTI | ATGAA | 3 cut(s) | 48, 111, 182 |
| XapI | RAATTY | 1 cut(s) | 54 |
| XmnI | GAANNNNTTC | 1 cut(s) | 189 |