Rh6CG384900

Small nuclear RNA activating complex (SNAPc), subunit SNAP43

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0019959
Physical Location & Seq
Forward (+)
57138706 .. 57141627
2922 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG384900.1

Sequence Viewer

Length: 618 bp
ATGAATAAATCTTCCACAGTTCGAAGAATTGCTGATAAATTTACTAAGCGCCTCCGGTCGCCTCTCCTCAAACTTGGCCGGCGGCGAAGGCACACTGAGGCACTAAGAAAACAATGGACCTTGCTCCGTTCAAGCTGTGAGTCAACAAGTTTTGCTGATATGAAGAGGGTATGGATTAACAATAAGTTGCCTTACGTTTTCGAGGCACGTCCATCTACCAACTTGGCCCTCTTTATGCAAGCATTGTATGCCCATTCAATTGTTTATTTGCCGATACTAAGATTGAGGATTTCATCCACATGGACTTGGTTTTCCTGTGACTTGCTTTTCAAGCTAGCTCTAGGTCTCAAGCAAATGTCTACTGATTACGCGAATTTGAAGAAAATAGCTACTGATGAGGGCATTAGTGTCATCAATAATGATGAAGACATAACAAAGGGCATTTCAAGAGATAAGAAGCTGATAGGAGATAAAATGGAGGAGATTGCAAGGGAGTGGGATGCTCAAAGGGAAGTGTTTCATCAACAAACAGGATTAGTGCAAGAACATCAGCTGCAGCTGCAGGAAGACGATGATACCTTTGATCTGGAGTTGGAACAAATGCTCTCGGAAACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SNAPc_SNAP43

Protein Analysis

205

Amino Acids

24.03

Weight (kDa)

9.05

Isoelectric Point (pI)

59.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SNAPC1 PF09808 46 - 90 1.8e-07 Small nuclear RNA activating complex (SNAPc), subunit 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019959)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0296211
rosa_roxburghii Rroxscaffold_7G00178320
rosa_samantha Rh6AG371700 Rh6BG379600 Rh6CG384900 Rh6DG372100
rosa_wichuraiana Rw6G032390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 359
AccII CGCG 1 cut(s) 371
AciI CCGC 1 cut(s) 82
AcoI YGGCCR 1 cut(s) 76
AcsI RAATTY 2 cut(s) 38, 373
AgsI TTSAA 5 cut(s) 132, 258, 331, 379, 447
AjiI CACGTC 1 cut(s) 209
AluBI AGCT 7 cut(s) 135, 334, 338, 389, 460, 553, 559
AluI AGCT 7 cut(s) 135, 334, 338, 389, 460, 553, 559
Alw26I GTCTC 1 cut(s) 350
AoxI GGCC 2 cut(s) 76, 225
ApeKI GCWGC 3 cut(s) 553, 556, 559
ApoI RAATTY 2 cut(s) 38, 373
Asp700I GAANNNNTTC 1 cut(s) 516
AspLEI GCGC 1 cut(s) 51
AspS9I GGNCC 2 cut(s) 117, 226
AsuII TTCGAA 1 cut(s) 22
AsuNHI GCTAGC 1 cut(s) 334
AvaII GGWCC 1 cut(s) 117
BbsI GAAGAC 2 cut(s) 432, 573
BbvI GCAGC 3 cut(s) 540, 546, 568
BccI CCATC 1 cut(s) 220
BcoDI GTCTC 1 cut(s) 350
BfaI CTAG 2 cut(s) 335, 341
BfmI CTRYAG 2 cut(s) 554, 560
BfoI RGCGCY 1 cut(s) 52
BisI GCNGC 4 cut(s) 83, 554, 557, 560
BlsI GCNGC 4 cut(s) 84, 555, 558, 561
Bme18I GGWCC 1 cut(s) 117
BmgBI CACGTC 1 cut(s) 209
BmgT120I GGNCC 2 cut(s) 117, 226
BmsI GCATC 1 cut(s) 490
BmtI GCTAGC 1 cut(s) 338
BpiI GAAGAC 2 cut(s) 432, 573
BpmI CTGGAG 1 cut(s) 608
Bpu14I TTCGAA 1 cut(s) 22
BpuEI CTTGAG 1 cut(s) 332
BsaI GGTCTC 1 cut(s) 350
BsaWI WCCGGW 1 cut(s) 54
Bse118I RCCGGY 1 cut(s) 78
BseGI GGATG 2 cut(s) 293, 505
BseMII CTCAG 1 cut(s) 87
BseRI GAGGAG 2 cut(s) 56, 494
BseXI GCAGC 3 cut(s) 540, 546, 568
Bsh1236I CGCG 1 cut(s) 371
Bsh1285I CGRYCG 1 cut(s) 59
BshFI GGCC 2 cut(s) 78, 227
BsiEI CGRYCG 1 cut(s) 59
BsiSI CCGG 2 cut(s) 55, 79
BsmAI GTCTC 1 cut(s) 350
BsnI GGCC 2 cut(s) 78, 227
Bso31I GGTCTC 1 cut(s) 350
Bsp119I TTCGAA 1 cut(s) 22
Bsp143I GATC 1 cut(s) 583
BspACI CCGC 1 cut(s) 82
BspANI GGCC 2 cut(s) 78, 227
BspCNI CTCAG 1 cut(s) 88
BspFNI CGCG 1 cut(s) 371
BspMAI CTGCAG 2 cut(s) 558, 564
BspOI GCTAGC 1 cut(s) 338
BspT104I TTCGAA 1 cut(s) 22
BspTNI GGTCTC 1 cut(s) 350
BsrFI RCCGGY 1 cut(s) 78
BssAI RCCGGY 1 cut(s) 78
BssMI GATC 1 cut(s) 583
Bst4CI ACNGT 1 cut(s) 19
Bst6I CTCTTC 1 cut(s) 158
BstAPI GCANNNNNTGC 1 cut(s) 248
BstBI TTCGAA 1 cut(s) 22
BstC8I GCNNGC 3 cut(s) 80, 240, 336
BstDEI CTNAG 4 cut(s) 45, 96, 104, 278
BstF5I GGATG 2 cut(s) 293, 505
BstFNI CGCG 1 cut(s) 371
BstH2I RGCGCY 1 cut(s) 52
BstHHI GCGC 1 cut(s) 51
BstKTI GATC 1 cut(s) 586
BstMAI GTCTC 1 cut(s) 350
BstMBI GATC 1 cut(s) 583
BstMCI CGRYCG 1 cut(s) 59
BstMWI GCNNNNNNNGC 4 cut(s) 88, 248, 331, 559
BstSFI CTRYAG 2 cut(s) 554, 560
BstUI CGCG 1 cut(s) 371
BstV1I GCAGC 3 cut(s) 540, 546, 568
BstV2I GAAGAC 2 cut(s) 432, 573
BsuRI GGCC 2 cut(s) 78, 227
BtrI CACGTC 1 cut(s) 209
BtsCI GGATG 2 cut(s) 293, 505
BtsIMutI CAGTG 1 cut(s) 93
Cac8I GCNNGC 3 cut(s) 80, 240, 336
CfoI GCGC 1 cut(s) 51
Cfr10I RCCGGY 1 cut(s) 78
Cfr13I GGNCC 2 cut(s) 117, 226
CviAII CATG 2 cut(s) 300, 615
CviJI RGCY 9 cut(s) 78, 135, 227, 334, 338, 389, 460, 553, 559
CviKI_1 RGCY 9 cut(s) 78, 135, 227, 334, 338, 389, 460, 553, 559
DdeI CTNAG 4 cut(s) 45, 96, 104, 278
DpnI GATC 1 cut(s) 585
DpnII GATC 1 cut(s) 583
EaeI YGGCCR 1 cut(s) 76
Eam1104I CTCTTC 1 cut(s) 158
EarI CTCTTC 1 cut(s) 158
Eco31I GGTCTC 1 cut(s) 350
Eco47I GGWCC 1 cut(s) 117
FaeI CATG 2 cut(s) 303, 618
FaiI YATR 7 cut(s) 161, 172, 236, 249, 301, 431, 616
FatI CATG 2 cut(s) 299, 614
FblI GTMKAC 1 cut(s) 359
Fnu4HI GCNGC 4 cut(s) 83, 554, 557, 560
FokI GGATG 2 cut(s) 280, 512
Fsp4HI GCNGC 4 cut(s) 83, 554, 557, 560
FspBI CTAG 2 cut(s) 335, 341
GlaI GCGC 1 cut(s) 50
GluI GCNGC 4 cut(s) 83, 554, 557, 560
GsuI CTGGAG 1 cut(s) 608
HaeII RGCGCY 1 cut(s) 52
HaeIII GGCC 2 cut(s) 78, 227
HapII CCGG 2 cut(s) 55, 79
HhaI GCGC 1 cut(s) 51
Hin1II CATG 2 cut(s) 303, 618
Hin6I GCGC 1 cut(s) 49
HinP1I GCGC 1 cut(s) 49
HincII GTYRAC 1 cut(s) 144
HindII GTYRAC 1 cut(s) 144
HinfI GANTC 1 cut(s) 140
HpaII CCGG 2 cut(s) 55, 79
Hpy166II GTNNAC 2 cut(s) 144, 360
Hpy188I TCNGA 1 cut(s) 610
Hpy188III TCNNGA 2 cut(s) 447, 587
Hpy8I GTNNAC 2 cut(s) 144, 360
HpyAV CCTTC 1 cut(s) 81
HpyCH4III ACNGT 1 cut(s) 19
HpyCH4IV ACGT 2 cut(s) 195, 208
HpyCH4V TGCA 5 cut(s) 238, 488, 541, 556, 562
HpyF10VI GCNNNNNNNGC 4 cut(s) 88, 248, 331, 559
HpyF3I CTNAG 4 cut(s) 45, 96, 104, 278
HpySE526I ACGT 2 cut(s) 195, 208
Hsp92II CATG 2 cut(s) 303, 618
HspAI GCGC 1 cut(s) 49
KroI GCCGGC 1 cut(s) 78
KroNI GCCGGC 1 cut(s) 80
Kzo9I GATC 1 cut(s) 583
LmnI GCTCC 1 cut(s) 129
LpnPI CCDG 6 cut(s) 68, 92, 328, 516, 548, 572
Lsp1109I GCAGC 3 cut(s) 540, 546, 568
LweI GCATC 1 cut(s) 490
MaeI CTAG 2 cut(s) 335, 341
MaeII ACGT 2 cut(s) 195, 208
MaeIII GTNAC 1 cut(s) 317
MalI GATC 1 cut(s) 585
MboI GATC 1 cut(s) 583
MboII GAAGA 6 cut(s) 3, 36, 175, 391, 437, 578
MfeI CAATTG 1 cut(s) 258
MluCI AATT 4 cut(s) 27, 38, 258, 373
MlyI GAGTC 1 cut(s) 149
MmeI TCCRAC 1 cut(s) 573
MroNI GCCGGC 1 cut(s) 78
MroXI GAANNNNTTC 1 cut(s) 516
MseI TTAA 1 cut(s) 177
MslI CAYNNNNRTG 1 cut(s) 298
MspA1I CMGCKG 2 cut(s) 553, 559
MspI CCGG 2 cut(s) 55, 79
MunI CAATTG 1 cut(s) 258
MvnI CGCG 1 cut(s) 371
MwoI GCNNNNNNNGC 4 cut(s) 88, 248, 331, 559
NaeI GCCGGC 1 cut(s) 80
NdeII GATC 1 cut(s) 583
NgoMIV GCCGGC 1 cut(s) 78
NheI GCTAGC 1 cut(s) 334
NlaIII CATG 2 cut(s) 303, 618
NmuCI GTSAC 1 cut(s) 317
NspV TTCGAA 1 cut(s) 22
PdiI GCCGGC 1 cut(s) 80
PdmI GAANNNNTTC 1 cut(s) 516
PkrI GCNGC 4 cut(s) 84, 555, 558, 561
PleI GAGTC 1 cut(s) 148
PpsI GAGTC 1 cut(s) 148
PspPI GGNCC 2 cut(s) 117, 226
PstI CTGCAG 2 cut(s) 558, 564
PvuII CAGCTG 2 cut(s) 553, 559
RseI CAYNNNNRTG 1 cut(s) 298
SaqAI TTAA 1 cut(s) 177
SatI GCNGC 4 cut(s) 83, 554, 557, 560
Sau3AI GATC 1 cut(s) 583
Sau96I GGNCC 2 cut(s) 117, 226
SchI GAGTC 1 cut(s) 149
SfaNI GCATC 1 cut(s) 490
SfcI CTRYAG 2 cut(s) 554, 560
SfuI TTCGAA 1 cut(s) 22
SinI GGWCC 1 cut(s) 117
SmiMI CAYNNNNRTG 1 cut(s) 298
SmlI CTYRAG 1 cut(s) 347
SmoI CTYRAG 1 cut(s) 347
Sse9I AATT 4 cut(s) 27, 38, 258, 373
SsiI CCGC 1 cut(s) 82
SspMI CTAG 2 cut(s) 335, 341
TaaI ACNGT 1 cut(s) 19
TaiI ACGT 2 cut(s) 198, 211
TaqI TCGA 2 cut(s) 22, 201
TasI AATT 4 cut(s) 27, 38, 258, 373
TauI GCSGC 1 cut(s) 85
Tru1I TTAA 1 cut(s) 177
Tru9I TTAA 1 cut(s) 177
TscAI CASTG 1 cut(s) 100
TseFI GTSAC 1 cut(s) 317
TseI GCWGC 3 cut(s) 553, 556, 559
Tsp45I GTSAC 1 cut(s) 317
TspDTI ATGAA 5 cut(s) 17, 176, 282, 438, 509
TspGWI ACGGA 1 cut(s) 116
TspRI CASTG 1 cut(s) 100
VpaK11BI GGWCC 1 cut(s) 117
XapI RAATTY 2 cut(s) 38, 373
XmiI GTMKAC 1 cut(s) 359
XmnI GAANNNNTTC 1 cut(s) 516
XspI CTAG 2 cut(s) 335, 341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.