Rw6G032390

Small nuclear RNA activating complex (SNAPc), subunit SNAP43

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0019959
Physical Location & Seq
Forward (+)
56552869 .. 56559466
6598 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G032390.1

Sequence Viewer

Length: 495 bp
ATGCTAGAAAAGAATATTTTCCTGTATGGGTGTTTGGAAACAAATGAACATTTGAAAGAGATAGTAAATGAACTAATAGAGTTACAGAATGCTAGAATTCAAGTTGCATGCAAGAATTTTTTTGCCGATACTAAGATTGAGGATTTCATCCACATGGACTTGCTAGCTCTAGGTGTACAACATCTAATATCCATTTTTTATATATGTATACGGGGAATGGAATTTAACTTGAATAAGCTCAAGCAAATGTCTACTGATTACGCGAGTTCTATTCCGGGGATTGAGGAGGGCATTAGTGTCATCAATGATGATGAAGACATAATAAAGGGCATTTCAAGAGATAAGAAGCTGATAGGAGATAAAATGGAGGAGATTGATGCTCAAAGGGAAGTGTTTCATCAACAAATAGGATTAGTGCAAGAACATCAGCTGCAGCTGCAGGAAGACGATGATACCTTTGATCTGGAGTTGGAACAAGTGCTCTCGGAAACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SNAPc_SNAP43

Protein Analysis

164

Amino Acids

18.96

Weight (kDa)

4.42

Isoelectric Point (pI)

47.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019959)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0296211
rosa_roxburghii Rroxscaffold_7G00178320
rosa_samantha Rh6AG371700 Rh6BG379600 Rh6CG384900 Rh6DG372100
rosa_wichuraiana Rw6G032390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 208, 251
AccII CGCG 1 cut(s) 263
AcsI RAATTY 3 cut(s) 96, 115, 221
AfaI GTAC 1 cut(s) 177
AgsI TTSAA 4 cut(s) 55, 101, 232, 336
AluBI AGCT 5 cut(s) 167, 238, 349, 430, 436
AluI AGCT 5 cut(s) 167, 238, 349, 430, 436
Alw21I GWGCWC 1 cut(s) 483
ApeKI GCWGC 3 cut(s) 430, 433, 436
ApoI RAATTY 3 cut(s) 96, 115, 221
Asp700I GAANNNNTTC 2 cut(s) 17, 393
AsuC2I CCSGG 1 cut(s) 276
AsuNHI GCTAGC 1 cut(s) 163
BbsI GAAGAC 2 cut(s) 321, 450
Bbv12I GWGCWC 1 cut(s) 483
BbvI GCAGC 3 cut(s) 417, 423, 445
BcnI CCSGG 1 cut(s) 276
BfaI CTAG 4 cut(s) 5, 93, 164, 170
BfmI CTRYAG 2 cut(s) 431, 437
BisI GCNGC 3 cut(s) 431, 434, 437
BlsI GCNGC 3 cut(s) 432, 435, 438
Bme1390I CCNGG 1 cut(s) 276
BmrFI CCNGG 1 cut(s) 276
BmsI GCATC 1 cut(s) 367
BmtI GCTAGC 1 cut(s) 167
BpiI GAAGAC 2 cut(s) 321, 450
BpmI CTGGAG 1 cut(s) 485
BpuEI CTTGAG 1 cut(s) 224
BpuMI CCSGG 1 cut(s) 276
BsaJI CCNNGG 1 cut(s) 275
BseDI CCNNGG 1 cut(s) 275
BseGI GGATG 1 cut(s) 147
BseRI GAGGAG 2 cut(s) 299, 383
BseXI GCAGC 3 cut(s) 417, 423, 445
Bsh1236I CGCG 1 cut(s) 263
BsiHKAI GWGCWC 1 cut(s) 483
BsiSI CCGG 1 cut(s) 275
BsmI GAATGC 1 cut(s) 94
Bsp1286I GDGCHC 1 cut(s) 483
Bsp1407I TGTACA 1 cut(s) 175
Bsp143I GATC 1 cut(s) 460
BspFNI CGCG 1 cut(s) 263
BspMAI CTGCAG 2 cut(s) 435, 441
BspOI GCTAGC 1 cut(s) 167
BsrGI TGTACA 1 cut(s) 175
BssECI CCNNGG 1 cut(s) 275
BssMI GATC 1 cut(s) 460
BssNAI GTATAC 1 cut(s) 209
Bst1107I GTATAC 1 cut(s) 209
BstAUI TGTACA 1 cut(s) 175
BstC8I GCNNGC 2 cut(s) 109, 165
BstDEI CTNAG 1 cut(s) 132
BstF5I GGATG 1 cut(s) 147
BstFNI CGCG 1 cut(s) 263
BstKTI GATC 1 cut(s) 463
BstMBI GATC 1 cut(s) 460
BstMWI GCNNNNNNNGC 1 cut(s) 436
BstNSI RCATGY 1 cut(s) 111
BstSCI CCNGG 1 cut(s) 274
BstSFI CTRYAG 2 cut(s) 431, 437
BstUI CGCG 1 cut(s) 263
BstV1I GCAGC 3 cut(s) 417, 423, 445
BstV2I GAAGAC 2 cut(s) 321, 450
BstZ17I GTATAC 1 cut(s) 209
BtsCI GGATG 1 cut(s) 147
Cac8I GCNNGC 2 cut(s) 109, 165
Csp6I GTAC 1 cut(s) 176
CviAII CATG 3 cut(s) 108, 154, 492
CviJI RGCY 5 cut(s) 167, 238, 349, 430, 436
CviKI_1 RGCY 5 cut(s) 167, 238, 349, 430, 436
CviQI GTAC 1 cut(s) 176
DdeI CTNAG 1 cut(s) 132
DpnI GATC 1 cut(s) 462
DpnII GATC 1 cut(s) 460
EcoRI GAATTC 1 cut(s) 96
FaeI CATG 3 cut(s) 111, 157, 495
FaiI YATR 9 cut(s) 27, 109, 155, 201, 203, 205, 209, 320, 493
FatI CATG 3 cut(s) 107, 153, 491
FblI GTMKAC 2 cut(s) 208, 251
Fnu4HI GCNGC 3 cut(s) 431, 434, 437
FokI GGATG 1 cut(s) 134
Fsp4HI GCNGC 3 cut(s) 431, 434, 437
FspBI CTAG 4 cut(s) 5, 93, 164, 170
GluI GCNGC 3 cut(s) 431, 434, 437
GsuI CTGGAG 1 cut(s) 485
HapII CCGG 1 cut(s) 275
Hin1II CATG 3 cut(s) 111, 157, 495
HpaII CCGG 1 cut(s) 275
Hpy166II GTNNAC 3 cut(s) 176, 209, 252
Hpy188I TCNGA 1 cut(s) 487
Hpy188III TCNNGA 2 cut(s) 336, 464
Hpy8I GTNNAC 3 cut(s) 176, 209, 252
HpyCH4V TGCA 5 cut(s) 107, 111, 418, 433, 439
HpyF10VI GCNNNNNNNGC 1 cut(s) 436
HpyF3I CTNAG 1 cut(s) 132
Hsp92II CATG 3 cut(s) 111, 157, 495
Kzo9I GATC 1 cut(s) 460
LpnPI CCDG 4 cut(s) 35, 288, 425, 449
Lsp1109I GCAGC 3 cut(s) 417, 423, 445
LweI GCATC 1 cut(s) 367
MaeI CTAG 4 cut(s) 5, 93, 164, 170
MaeIII GTNAC 1 cut(s) 81
MalI GATC 1 cut(s) 462
MboI GATC 1 cut(s) 460
MboII GAAGA 2 cut(s) 326, 455
MhlI GDGCHC 1 cut(s) 483
MluCI AATT 3 cut(s) 96, 115, 221
MmeI TCCRAC 1 cut(s) 450
MnlI CCTC 4 cut(s) 133, 277, 280, 361
MroXI GAANNNNTTC 2 cut(s) 17, 393
MseI TTAA 1 cut(s) 225
MslI CAYNNNNRTG 1 cut(s) 152
MspA1I CMGCKG 2 cut(s) 430, 436
MspI CCGG 1 cut(s) 275
MspR9I CCNGG 1 cut(s) 276
Mva1269I GAATGC 1 cut(s) 94
MvnI CGCG 1 cut(s) 263
MwoI GCNNNNNNNGC 1 cut(s) 436
NciI CCSGG 1 cut(s) 276
NdeII GATC 1 cut(s) 460
NheI GCTAGC 1 cut(s) 163
NlaIII CATG 3 cut(s) 111, 157, 495
NspI RCATGY 1 cut(s) 111
PaeI GCATGC 1 cut(s) 111
PctI GAATGC 1 cut(s) 94
PdmI GAANNNNTTC 2 cut(s) 17, 393
PkrI GCNGC 3 cut(s) 432, 435, 438
PstI CTGCAG 2 cut(s) 435, 441
PvuII CAGCTG 2 cut(s) 430, 436
RsaI GTAC 1 cut(s) 177
RsaNI GTAC 1 cut(s) 176
RseI CAYNNNNRTG 1 cut(s) 152
SaqAI TTAA 1 cut(s) 225
SatI GCNGC 3 cut(s) 431, 434, 437
Sau3AI GATC 1 cut(s) 460
ScrFI CCNGG 1 cut(s) 276
SduI GDGCHC 1 cut(s) 483
SetI ASST 7 cut(s) 169, 175, 240, 351, 432, 438, 458
SfaNI GCATC 1 cut(s) 367
SfcI CTRYAG 2 cut(s) 431, 437
SmiMI CAYNNNNRTG 1 cut(s) 152
SmlI CTYRAG 1 cut(s) 239
SmoI CTYRAG 1 cut(s) 239
SphI GCATGC 1 cut(s) 111
Sse9I AATT 3 cut(s) 96, 115, 221
SspI AATATT 1 cut(s) 16
SspMI CTAG 4 cut(s) 5, 93, 164, 170
StyD4I CCNGG 1 cut(s) 274
TasI AATT 3 cut(s) 96, 115, 221
TatI WGTACW 1 cut(s) 175
Tru1I TTAA 1 cut(s) 225
Tru9I TTAA 1 cut(s) 225
TseI GCWGC 3 cut(s) 430, 433, 436
TspDTI ATGAA 5 cut(s) 60, 84, 136, 327, 386
XapI RAATTY 3 cut(s) 96, 115, 221
XceI RCATGY 1 cut(s) 111
XmiI GTMKAC 2 cut(s) 208, 251
XmnI GAANNNNTTC 2 cut(s) 17, 393
XspI CTAG 4 cut(s) 5, 93, 164, 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.