RchiOBHm_Chr6g0306381

ultraviolet-B receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0019675
Physical Location & Seq
Reverse (-)
65103838 .. 65104396
559 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 459 bp
ATGATGGTTTGCCAAAATTTGGCCAAAATATCACAATTTTTTTATTATGCTCCCAGAGTAGTATATATACGAGTGACTACATTTTTCCAGAGCATATCCTCTTCGTCTCTCATTGGTAGTGTCAAACACCAGGTGAGCGGAAACAGTTTCAGTATAGACTATAGAGCTCTGCATTTCTTAATGGAGGAGAGCGATGATGTCAGCTTGTCTCCCTCCAGTGGAGGCAACTTGGCTCGTAAAGTGGTGGCGGTGGCTGCCGGAGAAGCTCACACTCTGGCGCTCACAGGTGATGGGTATGTGTATTCATGGGGGAGAGGCATGTTTGGGCGGCTCGGAACCGGTTCGCAATCCGACGAGCTCTGTCCGGTTCGGGTCAAATTTAAACCTGAAAAGGGGCTCAAATTTGTGGGAGTTGCTGCTGGTGCTTACCATAGTCTTGCTCTGGCTGGTCAGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RCC1

Protein Analysis

152

Amino Acids

16.4

Weight (kDa)

9.17

Isoelectric Point (pI)

25.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_RLD PF25390 73 - 149 4.3e-17 RCC1-like domain
RCC1_2 PF13540 81 - 106 4.1e-09 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 97 - 148 3.2e-16 Regulator of chromosome condensation (RCC1) repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019675)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g35481
malus_domestica MD15G1092900.v1.1
prunus_persica Prupe.1G447800_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0306321 RchiOBHm_Chr6g0306381
rosa_rugosa Rorug06G0352000
rosa_samantha Rh6DG462000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 19
AccBSI CCGCTC 1 cut(s) 138
AciI CCGC 3 cut(s) 138, 248, 328
AcoI YGGCCR 1 cut(s) 21
AcsI RAATTY 3 cut(s) 16, 377, 401
AdeI CACNNNGTG 1 cut(s) 133
AfiI CCNNNNNNNGG 3 cut(s) 19, 218, 392
AgeI ACCGGT 1 cut(s) 338
AjnI CCWGG 1 cut(s) 129
AluBI AGCT 4 cut(s) 167, 204, 266, 358
AluI AGCT 4 cut(s) 167, 204, 266, 358
Alw21I GWGCWC 2 cut(s) 169, 360
Alw26I GTCTC 2 cut(s) 111, 213
AoxI GGCC 1 cut(s) 21
ApeKI GCWGC 2 cut(s) 254, 416
ApoI RAATTY 3 cut(s) 16, 377, 401
AsiGI ACCGGT 1 cut(s) 338
Asp700I GAANNNNTTC 1 cut(s) 340
AspLEI GCGC 1 cut(s) 280
AsuHPI GGTGA 2 cut(s) 145, 299
BalI TGGCCA 1 cut(s) 23
BanII GRGCYC 3 cut(s) 169, 360, 399
Bbv12I GWGCWC 2 cut(s) 169, 360
BbvI GCAGC 2 cut(s) 241, 403
BccI CCATC 1 cut(s) 284
BciT130I CCWGG 1 cut(s) 131
BcoDI GTCTC 2 cut(s) 111, 213
BfmI CTRYAG 1 cut(s) 160
BfoI RGCGCY 1 cut(s) 281
BisI GCNGC 3 cut(s) 255, 329, 417
BlsI GCNGC 3 cut(s) 256, 330, 418
Bme1390I CCNGG 1 cut(s) 131
BmiI GGNNCC 1 cut(s) 337
BmrFI CCNGG 1 cut(s) 131
BpmI CTGGAG 1 cut(s) 199
BsaWI WCCGGW 2 cut(s) 338, 364
Bsc4I CCNNNNNNNGG 3 cut(s) 19, 218, 392
Bse118I RCCGGY 1 cut(s) 338
Bse1I ACTGG 1 cut(s) 216
BseBI CCWGG 1 cut(s) 131
BseLI CCNNNNNNNGG 3 cut(s) 19, 218, 392
BseNI ACTGG 1 cut(s) 216
BseRI GAGGAG 1 cut(s) 200
BseXI GCAGC 2 cut(s) 241, 403
BshFI GGCC 1 cut(s) 23
BshTI ACCGGT 1 cut(s) 338
BsiHKAI GWGCWC 2 cut(s) 169, 360
BsiSI CCGG 3 cut(s) 258, 339, 365
BslI CCNNNNNNNGG 3 cut(s) 19, 218, 392
BsmAI GTCTC 2 cut(s) 111, 213
BsmBI CGTCTC 1 cut(s) 111
BsnI GGCC 1 cut(s) 23
Bsp1286I GDGCHC 3 cut(s) 169, 360, 399
BspACI CCGC 3 cut(s) 138, 248, 328
BspANI GGCC 1 cut(s) 23
BspLI GGNNCC 1 cut(s) 337
BsrBI CCGCTC 1 cut(s) 138
BsrFI RCCGGY 1 cut(s) 338
BsrI ACTGG 1 cut(s) 216
BssAI RCCGGY 1 cut(s) 338
Bst2UI CCWGG 1 cut(s) 131
Bst4CI ACNGT 1 cut(s) 146
Bst6I CTCTTC 1 cut(s) 106
BstH2I RGCGCY 1 cut(s) 281
BstHHI GCGC 1 cut(s) 280
BstMAI GTCTC 2 cut(s) 111, 213
BstMWI GCNNNNNNNGC 3 cut(s) 254, 263, 422
BstNI CCWGG 1 cut(s) 131
BstNSI RCATGY 1 cut(s) 322
BstSCI CCNGG 1 cut(s) 129
BstSFI CTRYAG 1 cut(s) 160
BstV1I GCAGC 2 cut(s) 241, 403
BsuRI GGCC 1 cut(s) 23
BtgZI GCGATG 1 cut(s) 207
BtsIMutI CAGTG 1 cut(s) 223
CfoI GCGC 1 cut(s) 280
Cfr10I RCCGGY 1 cut(s) 338
CsiI ACCWGGT 1 cut(s) 129
CspAI ACCGGT 1 cut(s) 338
CviAII CATG 2 cut(s) 306, 319
DraI TTTAAA 1 cut(s) 382
DraIII CACNNNGTG 1 cut(s) 133
EaeI YGGCCR 1 cut(s) 21
Eam1104I CTCTTC 1 cut(s) 106
EarI CTCTTC 1 cut(s) 106
Ecl136II GAGCTC 2 cut(s) 167, 358
Eco24I GRGCYC 3 cut(s) 169, 360, 399
Eco53kI GAGCTC 2 cut(s) 167, 358
EcoICRI GAGCTC 2 cut(s) 167, 358
EcoRII CCWGG 1 cut(s) 129
EcoT38I GRGCYC 3 cut(s) 169, 360, 399
Esp3I CGTCTC 1 cut(s) 111
FaeI CATG 2 cut(s) 309, 322
FatI CATG 2 cut(s) 305, 318
Fnu4HI GCNGC 3 cut(s) 255, 329, 417
FriOI GRGCYC 3 cut(s) 169, 360, 399
Fsp4HI GCNGC 3 cut(s) 255, 329, 417
GlaI GCGC 1 cut(s) 279
GluI GCNGC 3 cut(s) 255, 329, 417
GsuI CTGGAG 1 cut(s) 199
HaeII RGCGCY 1 cut(s) 281
HaeIII GGCC 1 cut(s) 23
HapII CCGG 3 cut(s) 258, 339, 365
HhaI GCGC 1 cut(s) 280
Hin1II CATG 2 cut(s) 309, 322
Hin6I GCGC 1 cut(s) 278
HinP1I GCGC 1 cut(s) 278
HpaII CCGG 3 cut(s) 258, 339, 365
HphI GGTGA 2 cut(s) 145, 299
Hpy188I TCNGA 2 cut(s) 335, 352
Hpy188III TCNNGA 1 cut(s) 88
Hpy99I CGWCG 1 cut(s) 356
HpyCH4III ACNGT 1 cut(s) 146
HpyCH4V TGCA 1 cut(s) 172
HpyF10VI GCNNNNNNNGC 3 cut(s) 254, 263, 422
Hsp92II CATG 2 cut(s) 309, 322
HspAI GCGC 1 cut(s) 278
LmnI GCTCC 1 cut(s) 55
Lsp1109I GCAGC 2 cut(s) 241, 403
MabI ACCWGGT 1 cut(s) 129
MaeIII GTNAC 1 cut(s) 73
MbiI CCGCTC 1 cut(s) 138
MboII GAAGA 1 cut(s) 93
MhlI GDGCHC 3 cut(s) 169, 360, 399
MlsI TGGCCA 1 cut(s) 23
MluCI AATT 4 cut(s) 16, 35, 377, 401
MluNI TGGCCA 1 cut(s) 23
MmeI TCCRAC 1 cut(s) 375
MnlI CCTC 5 cut(s) 109, 178, 215, 223, 308
Mox20I TGGCCA 1 cut(s) 23
MroXI GAANNNNTTC 1 cut(s) 340
MscI TGGCCA 1 cut(s) 23
MseI TTAA 2 cut(s) 179, 381
Msp20I TGGCCA 1 cut(s) 23
MspI CCGG 3 cut(s) 258, 339, 365
MspR9I CCNGG 1 cut(s) 131
MvaI CCWGG 1 cut(s) 131
MwoI GCNNNNNNNGC 3 cut(s) 254, 263, 422
NlaIII CATG 2 cut(s) 309, 322
NlaIV GGNNCC 1 cut(s) 337
NmuCI GTSAC 1 cut(s) 73
NspI RCATGY 1 cut(s) 322
PdmI GAANNNNTTC 1 cut(s) 340
PflMI CCANNNNNTGG 1 cut(s) 19
PinAI ACCGGT 1 cut(s) 338
PkrI GCNGC 3 cut(s) 256, 330, 418
Psp124BI GAGCTC 2 cut(s) 169, 360
Psp6I CCWGG 1 cut(s) 129
PspGI CCWGG 1 cut(s) 129
PspN4I GGNNCC 1 cut(s) 337
SacI GAGCTC 2 cut(s) 169, 360
SaqAI TTAA 2 cut(s) 179, 381
SatI GCNGC 3 cut(s) 255, 329, 417
ScrFI CCNGG 1 cut(s) 131
SduI GDGCHC 3 cut(s) 169, 360, 399
SetI ASST 7 cut(s) 135, 169, 206, 268, 289, 360, 388
SexAI ACCWGGT 1 cut(s) 129
SfcI CTRYAG 1 cut(s) 160
Sse9I AATT 4 cut(s) 16, 35, 377, 401
SsiI CCGC 3 cut(s) 138, 248, 328
SstI GAGCTC 2 cut(s) 169, 360
StyD4I CCNGG 1 cut(s) 129
TaaI ACNGT 1 cut(s) 146
TasI AATT 4 cut(s) 16, 35, 377, 401
TauI GCSGC 1 cut(s) 331
Tru1I TTAA 2 cut(s) 179, 381
Tru9I TTAA 2 cut(s) 179, 381
TscAI CASTG 1 cut(s) 223
TseFI GTSAC 1 cut(s) 73
TseI GCWGC 2 cut(s) 254, 416
Tsp45I GTSAC 1 cut(s) 73
TspDTI ATGAA 1 cut(s) 294
TspRI CASTG 1 cut(s) 223
Van91I CCANNNNNTGG 1 cut(s) 19
XapI RAATTY 3 cut(s) 16, 377, 401
XceI RCATGY 1 cut(s) 322
XmnI GAANNNNTTC 1 cut(s) 340
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.