RchiOBHm_Chr5g0000431

Belongs to the thiolase family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
254047 .. 257909
3863 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1242 bp
ATGGCTTCATCATCGTCTTCTGTTAAACCACGAGATGTCTGTATAGTGGGTGTGGCTCGTACCCCCATGGGCGGTTTCCTTGGTTCCCTCTCGTCTCTCTCAGCAACCCGCCTTGGCTCTATTGCCATCCAATGTGCTCTCAAGAGAGCAAATTTGGACCCCTCACTGGTGCAAGAGGTCTTCTTTGGGAATGTCCTAAGCGCCAATTTGGGCCAAGCTCCTGCCAGACAGGCTGCTTTAGGTGCAGGCATTCCAAACTCTGTCGTTTGCACCACGATTAACAAAGTCTGTTCATCCGGCATGAAAGCCGCTATGATCGCTGCACAAACCATCCAGCTGGGTCATAATGATATCGTTGTTGCTGGTGGCATGGAAAGCATGTCCAATGCCCCCAAGTATCTTCCAAATGCCAGACAGGGATCCCGGTTAGGACATGATAATATTGTTGATGGCATGCTTAAGGATGGTTTGTGGGATGTCTATAATGACTTTGGAATGGGAGTTTGTGCAGAAATATGTGCTGACAAATACTCCATATCCAGGGAACACCAGGATGGTTATGCTATTCAAAGTTTTGAGCGTGGAATTGCTGCACAAGATGCTGGTCTCTTTGCATGGGAAATAGTTCCGGTTGAAGTTCCTGGGGGACGAGGAAAGCCTTCCTCAATTGTTGACAAGGATGATGGTTTACAACAGTTTGATGCTGCAAAATTGAAAAAGCTTCGACCAAGTTTTAAGAAGAGTGGGGGTTCAGTTACTGCTGGCAATGCTTCTATCATAAGTGATGGTGCAGCTGCATTAGTGCTAGTGAGTGGGGAGAAGGCACTTGAACTTGGGTTACAAGTAATTGCTAAGATAAAAGGATTTGCTGATGCAGCTCAGGCACCTGAGTGGTTTACAACTGCTCCTGCCCTTGCAATACCAAGGGCTATTTCAAATGCTGGTTTGGAGGCTTCTCAAATAGATTACTATGAAATAAATGAGGCATTTGCTGTGGTGGCTCTTGCAAATCAAAAGCTCCTTGGCCTTAATCCTGAGAGAGTTAATGCCCATGGTGGAGCTGTATCTTTGGGACATCCATTGGGATGCAGTGGAGCTCGTATCTTGGTCACTTTATTAGGGGTATTGAGACAGAAAAATGGGAGGTATGGGGTTGGTGGTATCTGCAATGGGGGAGGTGGTGCATCTGCCTTTGTAGTTGAGCTCATGCCAATTGCGAGAGTGAGACCTTCCAGGTTATGA

Protein Analysis

413

Amino Acids

42.74

Weight (kDa)

8.72

Isoelectric Point (pI)

29.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thiolase_N PF00108 13 - 272 1.1e-92 Thiolase, N-terminal domain
Thiolase_C PF02803 281 - 401 1.9e-43 Thiolase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015847)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47720
fragaria_vesca FvH4_3g00290
malus_domestica MD10G1339600.v1.1
prunus_persica Prupe.4G003300_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0000431
rosa_laevigata RLG00000030866
rosa_multiflora Rmu_co8394755.1_g000001 Rmu_sc0003949.1_g000003 Rmu_ssc0000385.1_g000015
rosa_roxburghii Rroxscaffold_1G00075730
rosa_rugosa Rorug04G0383500 Rorug04G0383500
rosa_samantha Rh5AG003500 Rh5CG003700
rosa_wichuraiana Rw5G000350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 883
AciI CCGC 3 cut(s) 72, 109, 309
AclWI GGATC 2 cut(s) 414, 427
AcsI RAATTY 1 cut(s) 151
AfaI GTAC 1 cut(s) 61
AfiI CCNNNNNNNGG 3 cut(s) 71, 166, 540
AflII CTTAAG 1 cut(s) 458
AgsI TTSAA 5 cut(s) 569, 635, 715, 830, 936
AjnI CCWGG 4 cut(s) 539, 549, 640, 1232
AjuI GAANNNNNNNTTGG 2 cut(s) 916, 948
AleI CACNNNNGTG 1 cut(s) 889
AluBI AGCT 9 cut(s) 218, 337, 721, 794, 878, 1018, 1061, 1097, 1204
AluI AGCT 9 cut(s) 218, 337, 721, 794, 878, 1018, 1061, 1097, 1204
Alw21I GWGCWC 3 cut(s) 139, 1099, 1206
Alw26I GTCTC 4 cut(s) 99, 611, 1123, 1219
AlwI GGATC 2 cut(s) 414, 427
AlwNI CAGNNNCTG 1 cut(s) 758
AoxI GGCC 2 cut(s) 211, 1024
ApeKI GCWGC 7 cut(s) 233, 320, 590, 704, 791, 794, 875
ApoI RAATTY 1 cut(s) 151
Asp700I GAANNNNTTC 2 cut(s) 624, 658
AspLEI GCGC 1 cut(s) 203
AspS9I GGNCC 2 cut(s) 157, 211
AsuC2I CCSGG 1 cut(s) 424
AvaII GGWCC 1 cut(s) 157
BamHI GGATCC 1 cut(s) 419
BanI GGYRCC 1 cut(s) 883
BanII GRGCYC 2 cut(s) 1099, 1206
BauI CACGAG 1 cut(s) 30
BbsI GAAGAC 2 cut(s) 9, 172
Bbv12I GWGCWC 3 cut(s) 139, 1099, 1206
BbvI GCAGC 7 cut(s) 220, 307, 577, 691, 781, 803, 887
BccI CCATC 7 cut(s) 134, 338, 443, 458, 548, 677, 779
BciT130I CCWGG 4 cut(s) 541, 551, 642, 1234
BcnI CCSGG 1 cut(s) 424
BcoDI GTCTC 4 cut(s) 99, 611, 1123, 1219
BfaI CTAG 1 cut(s) 806
BfoI RGCGCY 1 cut(s) 204
BfrI CTTAAG 1 cut(s) 458
BglI GCCNNNNNGGC 1 cut(s) 230
BisI GCNGC 8 cut(s) 234, 309, 321, 591, 705, 792, 795, 876
BlsI GCNGC 8 cut(s) 235, 310, 322, 592, 706, 793, 796, 877
Bme1390I CCNGG 5 cut(s) 424, 541, 551, 642, 1234
Bme18I GGWCC 1 cut(s) 157
BmgT120I GGNCC 2 cut(s) 157, 211
BmiI GGNNCC 4 cut(s) 85, 159, 421, 885
BmrFI CCNGG 5 cut(s) 424, 541, 551, 642, 1234
BmsI GCATC 5 cut(s) 589, 691, 862, 1076, 1193
BpiI GAAGAC 2 cut(s) 9, 172
Bpu10I CCTNAGC 2 cut(s) 197, 879
BpuEI CTTGAG 1 cut(s) 125
BpuMI CCSGG 1 cut(s) 424
BsaI GGTCTC 2 cut(s) 611, 1219
BsaJI CCNNGG 8 cut(s) 66, 79, 112, 540, 641, 923, 1021, 1051
BsaWI WCCGGW 1 cut(s) 628
BsaXI ACNNNNNCTCC 4 cut(s) 515, 545, 889, 919
Bsc4I CCNNNNNNNGG 3 cut(s) 71, 166, 540
Bse1I ACTGG 1 cut(s) 171
Bse3DI GCAATG 2 cut(s) 772, 1174
BseBI CCWGG 4 cut(s) 541, 551, 642, 1234
BseDI CCNNGG 8 cut(s) 66, 79, 112, 540, 641, 923, 1021, 1051
BseGI GGATG 9 cut(s) 126, 293, 330, 469, 481, 559, 685, 1075, 1091
BseLI CCNNNNNNNGG 3 cut(s) 71, 166, 540
BseMI GCAATG 2 cut(s) 772, 1174
BseMII CTCAG 4 cut(s) 114, 879, 893, 1026
BseNI ACTGG 1 cut(s) 171
BseXI GCAGC 7 cut(s) 220, 307, 577, 691, 781, 803, 887
BseYI CCCAGC 1 cut(s) 337
BsgI GTGCAG 5 cut(s) 264, 306, 528, 576, 810
BshFI GGCC 2 cut(s) 213, 1026
BshNI GGYRCC 1 cut(s) 883
BsiHKAI GWGCWC 3 cut(s) 139, 1099, 1206
BsiSI CCGG 3 cut(s) 297, 424, 629
BslFI GGGAC 2 cut(s) 660, 1086
BslI CCNNNNNNNGG 3 cut(s) 71, 166, 540
BsmAI GTCTC 4 cut(s) 99, 611, 1123, 1219
BsmBI CGTCTC 1 cut(s) 99
BsmFI GGGAC 2 cut(s) 660, 1086
BsmI GAATGC 1 cut(s) 249
BsnI GGCC 2 cut(s) 213, 1026
Bso31I GGTCTC 2 cut(s) 611, 1219
Bsp1286I GDGCHC 3 cut(s) 139, 1099, 1206
Bsp143I GATC 2 cut(s) 315, 419
Bsp19I CCATGG 2 cut(s) 66, 1051
BspACI CCGC 3 cut(s) 72, 109, 309
BspANI GGCC 2 cut(s) 213, 1026
BspCNI CTCAG 4 cut(s) 113, 880, 892, 1027
BspLI GGNNCC 4 cut(s) 85, 159, 421, 885
BspPI GGATC 2 cut(s) 414, 427
BspT107I GGYRCC 1 cut(s) 883
BspTI CTTAAG 1 cut(s) 458
BspTNI GGTCTC 2 cut(s) 611, 1219
BsrDI GCAATG 2 cut(s) 772, 1174
BsrI ACTGG 1 cut(s) 171
BssECI CCNNGG 8 cut(s) 66, 79, 112, 540, 641, 923, 1021, 1051
BssMI GATC 2 cut(s) 315, 419
BssSI CACGAG 1 cut(s) 30
BssT1I CCWWGG 6 cut(s) 66, 79, 112, 923, 1021, 1051
Bst2BI CACGAG 1 cut(s) 30
Bst2UI CCWGG 4 cut(s) 541, 551, 642, 1234
Bst4CI ACNGT 1 cut(s) 696
Bst6I CTCTTC 1 cut(s) 734
BstAFI CTTAAG 1 cut(s) 458
BstAPI GCANNNNNTGC 1 cut(s) 599
BstC8I GCNNGC 3 cut(s) 247, 455, 763
BstDEI CTNAG 6 cut(s) 100, 197, 852, 879, 888, 1035
BstDSI CCRYGG 2 cut(s) 66, 1051
BstF5I GGATG 9 cut(s) 126, 293, 330, 469, 481, 559, 685, 1075, 1091
BstH2I RGCGCY 1 cut(s) 204
BstHHI GCGC 1 cut(s) 203
BstKTI GATC 2 cut(s) 318, 422
BstMAI GTCTC 4 cut(s) 99, 611, 1123, 1219
BstMBI GATC 2 cut(s) 315, 419
BstMWI GCNNNNNNNGC 9 cut(s) 230, 242, 317, 375, 599, 767, 875, 881, 998
BstNI CCWGG 4 cut(s) 541, 551, 642, 1234
BstNSI RCATGY 2 cut(s) 382, 457
BstSCI CCNGG 5 cut(s) 422, 539, 549, 640, 1232
BstV1I GCAGC 7 cut(s) 220, 307, 577, 691, 781, 803, 887
BstV2I GAAGAC 2 cut(s) 9, 172
BstX2I RGATCY 1 cut(s) 419
BstXI CCANNNNNNTGG 1 cut(s) 337
BstYI RGATCY 1 cut(s) 419
BsuRI GGCC 2 cut(s) 213, 1026
BtgI CCRYGG 2 cut(s) 66, 1051
BtsCI GGATG 9 cut(s) 126, 293, 330, 469, 481, 559, 685, 1075, 1091
BtsI GCAGTG 1 cut(s) 1096
BtsIMutI CAGTG 2 cut(s) 164, 1096
Cac8I GCNNGC 3 cut(s) 247, 455, 763
CaiI CAGNNNCTG 1 cut(s) 758
CfoI GCGC 1 cut(s) 203
Cfr13I GGNCC 2 cut(s) 157, 211
Csp6I GTAC 1 cut(s) 60
CviAII CATG 9 cut(s) 67, 301, 370, 379, 434, 454, 615, 1052, 1207
CviQI GTAC 1 cut(s) 60
DdeI CTNAG 6 cut(s) 100, 197, 852, 879, 888, 1035
DpnI GATC 2 cut(s) 317, 421
DpnII GATC 2 cut(s) 315, 419
Eam1104I CTCTTC 1 cut(s) 734
EarI CTCTTC 1 cut(s) 734
Ecl136II GAGCTC 2 cut(s) 1097, 1204
Eco130I CCWWGG 6 cut(s) 66, 79, 112, 923, 1021, 1051
Eco24I GRGCYC 2 cut(s) 1099, 1206
Eco31I GGTCTC 2 cut(s) 611, 1219
Eco32I GATATC 1 cut(s) 352
Eco47I GGWCC 1 cut(s) 157
Eco53kI GAGCTC 2 cut(s) 1097, 1204
EcoICRI GAGCTC 2 cut(s) 1097, 1204
EcoRII CCWGG 4 cut(s) 539, 549, 640, 1232
EcoRV GATATC 1 cut(s) 352
EcoT14I CCWWGG 6 cut(s) 66, 79, 112, 923, 1021, 1051
EcoT38I GRGCYC 2 cut(s) 1099, 1206
ErhI CCWWGG 6 cut(s) 66, 79, 112, 923, 1021, 1051
Esp3I CGTCTC 1 cut(s) 99
FaeI CATG 9 cut(s) 70, 304, 373, 382, 437, 457, 618, 1055, 1210
FaqI GGGAC 2 cut(s) 660, 1086
FatI CATG 9 cut(s) 66, 300, 369, 378, 433, 453, 614, 1051, 1206
FauI CCCGC 1 cut(s) 116
Fnu4HI GCNGC 8 cut(s) 234, 309, 321, 591, 705, 792, 795, 876
FokI GGATG 9 cut(s) 113, 280, 317, 476, 488, 566, 692, 1062, 1098
FriOI GRGCYC 2 cut(s) 1099, 1206
Fsp4HI GCNGC 8 cut(s) 234, 309, 321, 591, 705, 792, 795, 876
FspBI CTAG 1 cut(s) 806
GlaI GCGC 1 cut(s) 202
GluI GCNGC 8 cut(s) 234, 309, 321, 591, 705, 792, 795, 876
GsaI CCCAGC 1 cut(s) 341
HaeII RGCGCY 1 cut(s) 204
HaeIII GGCC 2 cut(s) 213, 1026
HapII CCGG 3 cut(s) 297, 424, 629
HhaI GCGC 1 cut(s) 203
Hin1II CATG 9 cut(s) 70, 304, 373, 382, 437, 457, 618, 1055, 1210
Hin6I GCGC 1 cut(s) 201
HinP1I GCGC 1 cut(s) 201
HincII GTYRAC 1 cut(s) 673
HindII GTYRAC 1 cut(s) 673
HindIII AAGCTT 1 cut(s) 719
HpaII CCGG 3 cut(s) 297, 424, 629
Hpy166II GTNNAC 3 cut(s) 673, 689, 897
Hpy188III TCNNGA 2 cut(s) 142, 1034
Hpy8I GTNNAC 3 cut(s) 673, 689, 897
HpyAV CCTTC 3 cut(s) 669, 814, 1239
HpyCH4III ACNGT 1 cut(s) 696
HpyF10VI GCNNNNNNNGC 9 cut(s) 230, 242, 317, 375, 599, 767, 875, 881, 998
HpyF3I CTNAG 6 cut(s) 100, 197, 852, 879, 888, 1035
Hsp92II CATG 9 cut(s) 70, 304, 373, 382, 437, 457, 618, 1055, 1210
HspAI GCGC 1 cut(s) 201
Kzo9I GATC 2 cut(s) 315, 419
LmnI GCTCC 5 cut(s) 223, 910, 1023, 1058, 1094
Lsp1109I GCAGC 7 cut(s) 220, 307, 577, 691, 781, 803, 887
LweI GCATC 5 cut(s) 589, 691, 862, 1076, 1193
MaeI CTAG 1 cut(s) 806
MaeIII GTNAC 3 cut(s) 754, 837, 1108
MalI GATC 2 cut(s) 317, 421
MboI GATC 2 cut(s) 315, 419
MboII GAAGA 4 cut(s) 9, 172, 392, 751
MfeI CAATTG 2 cut(s) 666, 1212
MflI RGATCY 1 cut(s) 419
MhlI GDGCHC 3 cut(s) 139, 1099, 1206
MluCI AATT 7 cut(s) 151, 205, 585, 666, 710, 846, 1212
MnlI CCTC 9 cut(s) 98, 169, 172, 644, 673, 943, 976, 1137, 1169
MroXI GAANNNNTTC 2 cut(s) 624, 658
MseI TTAA 6 cut(s) 24, 279, 459, 735, 1029, 1044
MslI CAYNNNNRTG 3 cut(s) 552, 889, 1084
MspA1I CMGCKG 2 cut(s) 337, 794
MspCI CTTAAG 1 cut(s) 458
MspI CCGG 3 cut(s) 297, 424, 629
MspR9I CCNGG 5 cut(s) 424, 541, 551, 642, 1234
MunI CAATTG 2 cut(s) 666, 1212
Mva1269I GAATGC 1 cut(s) 249
MvaI CCWGG 4 cut(s) 541, 551, 642, 1234
MwoI GCNNNNNNNGC 9 cut(s) 230, 242, 317, 375, 599, 767, 875, 881, 998
NciI CCSGG 1 cut(s) 424
NcoI CCATGG 2 cut(s) 66, 1051
NdeII GATC 2 cut(s) 315, 419
NlaIII CATG 9 cut(s) 70, 304, 373, 382, 437, 457, 618, 1055, 1210
NlaIV GGNNCC 4 cut(s) 85, 159, 421, 885
NmuCI GTSAC 1 cut(s) 1108
NspI RCATGY 2 cut(s) 382, 457
OliI CACNNNNGTG 1 cut(s) 889
PaeI GCATGC 1 cut(s) 457
PctI GAATGC 1 cut(s) 249
PdmI GAANNNNTTC 2 cut(s) 624, 658
PkrI GCNGC 8 cut(s) 235, 310, 322, 592, 706, 793, 796, 877
Psp124BI GAGCTC 2 cut(s) 1099, 1206
Psp6I CCWGG 4 cut(s) 539, 549, 640, 1232
PspFI CCCAGC 1 cut(s) 337
PspGI CCWGG 4 cut(s) 539, 549, 640, 1232
PspN4I GGNNCC 4 cut(s) 85, 159, 421, 885
PspPI GGNCC 2 cut(s) 157, 211
PsrI GAACNNNNNNTAC 2 cut(s) 822, 854
PstNI CAGNNNCTG 1 cut(s) 758
PsuI RGATCY 1 cut(s) 419
PvuII CAGCTG 2 cut(s) 337, 794
RsaI GTAC 1 cut(s) 61
RsaNI GTAC 1 cut(s) 60
RseI CAYNNNNRTG 3 cut(s) 552, 889, 1084
SacI GAGCTC 2 cut(s) 1099, 1206
SaqAI TTAA 6 cut(s) 24, 279, 459, 735, 1029, 1044
SatI GCNGC 8 cut(s) 234, 309, 321, 591, 705, 792, 795, 876
Sau3AI GATC 2 cut(s) 315, 419
Sau96I GGNCC 2 cut(s) 157, 211
ScrFI CCNGG 5 cut(s) 424, 541, 551, 642, 1234
SduI GDGCHC 3 cut(s) 139, 1099, 1206
SfaNI GCATC 5 cut(s) 589, 691, 862, 1076, 1193
SinI GGWCC 1 cut(s) 157
SmiMI CAYNNNNRTG 3 cut(s) 552, 889, 1084
SmlI CTYRAG 2 cut(s) 140, 458
SmoI CTYRAG 2 cut(s) 140, 458
SphI GCATGC 1 cut(s) 457
Sse9I AATT 7 cut(s) 151, 205, 585, 666, 710, 846, 1212
SsiI CCGC 3 cut(s) 72, 109, 309
SspI AATATT 1 cut(s) 442
SspMI CTAG 1 cut(s) 806
SstI GAGCTC 2 cut(s) 1099, 1206
StyD4I CCNGG 5 cut(s) 422, 539, 549, 640, 1232
StyI CCWWGG 6 cut(s) 66, 79, 112, 923, 1021, 1051
TaaI ACNGT 1 cut(s) 696
TaqI TCGA 1 cut(s) 724
TasI AATT 7 cut(s) 151, 205, 585, 666, 710, 846, 1212
TauI GCSGC 1 cut(s) 311
Tru1I TTAA 6 cut(s) 24, 279, 459, 735, 1029, 1044
Tru9I TTAA 6 cut(s) 24, 279, 459, 735, 1029, 1044
TscAI CASTG 2 cut(s) 171, 1096
TseFI GTSAC 1 cut(s) 1108
TseI GCWGC 7 cut(s) 233, 320, 590, 704, 791, 794, 875
Tsp45I GTSAC 1 cut(s) 1108
TspDTI ATGAA 3 cut(s) 282, 317, 987
TspRI CASTG 2 cut(s) 171, 1096
Vha464I CTTAAG 1 cut(s) 458
VpaK11BI GGWCC 1 cut(s) 157
XapI RAATTY 1 cut(s) 151
XceI RCATGY 2 cut(s) 382, 457
XmnI GAANNNNTTC 2 cut(s) 624, 658
XspI CTAG 1 cut(s) 806
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.