RchiOBHm_Chr5g0010141

HEAT repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0018795
Physical Location & Seq
Forward (+)
6751266 .. 6751545
280 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 234 bp
ATGGCTGCCCATCGACTCTGCTTCGATCTCATCTCCGCCGTCGCTCTCTCAGTTCGGCGTCTTGGTAGCGCAATGAAGTCCATGGTCGCCTCCGCAGCCCAGAAGCCACCGGAGCCGCTCCTCTGCTTCGATCTCATCTCCGCCATCGCCGAAGAGCCCAAGGTCTCGCTCCTCTGTTATTGTGGAGATGGTGAACTACAGGAGTCGAAGAAGGAGAACGGGGGGAAGAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

77

Amino Acids

8.21

Weight (kDa)

6.54

Isoelectric Point (pI)

39.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018795)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g14011
rosa_chinensis RchiOBHm_Chr1g0354611 RchiOBHm_Chr2g0131331 RchiOBHm_Chr5g0010141
rosa_laevigata RLG00000028196
rosa_multiflora Rmu_sc0036491.1_g000001
rosa_samantha Rh1AG254500 Rh1CG237600 Rh7CG466400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 118
AciI CCGC 4 cut(s) 36, 93, 116, 141
AcyI GRCGYC 1 cut(s) 58
Alw26I GTCTC 1 cut(s) 169
ApeKI GCWGC 2 cut(s) 5, 95
AspLEI GCGC 1 cut(s) 71
AsuHPI GGTGA 1 cut(s) 203
BanII GRGCYC 1 cut(s) 159
BbvI GCAGC 1 cut(s) 107
BccI CCATC 3 cut(s) 18, 152, 182
BceAI ACGGC 1 cut(s) 23
BcoDI GTCTC 1 cut(s) 169
BfmI CTRYAG 1 cut(s) 197
BisI GCNGC 3 cut(s) 6, 96, 116
BlsI GCNGC 3 cut(s) 7, 97, 117
BmiI GGNNCC 1 cut(s) 114
BsaHI GRCGYC 1 cut(s) 58
BsaI GGTCTC 1 cut(s) 169
BsaJI CCNNGG 2 cut(s) 81, 159
BsaWI WCCGGW 1 cut(s) 109
Bse3DI GCAATG 1 cut(s) 78
BseDI CCNNGG 2 cut(s) 81, 159
BseMI GCAATG 1 cut(s) 78
BseMII CTCAG 1 cut(s) 63
BseRI GAGGAG 2 cut(s) 110, 161
BseXI GCAGC 1 cut(s) 107
BsiSI CCGG 1 cut(s) 110
BsmAI GTCTC 1 cut(s) 169
Bso31I GGTCTC 1 cut(s) 169
Bsp1286I GDGCHC 1 cut(s) 159
Bsp143I GATC 2 cut(s) 25, 130
Bsp19I CCATGG 1 cut(s) 81
BspACI CCGC 4 cut(s) 36, 93, 116, 141
BspCNI CTCAG 1 cut(s) 62
BspLI GGNNCC 1 cut(s) 114
BspQI GCTCTTC 1 cut(s) 147
BspTNI GGTCTC 1 cut(s) 169
BsrBI CCGCTC 1 cut(s) 118
BsrDI GCAATG 1 cut(s) 78
BssECI CCNNGG 2 cut(s) 81, 159
BssMI GATC 2 cut(s) 25, 130
BssNI GRCGYC 1 cut(s) 58
BssT1I CCWWGG 2 cut(s) 81, 159
Bst6I CTCTTC 1 cut(s) 147
BstACI GRCGYC 1 cut(s) 58
BstDEI CTNAG 1 cut(s) 49
BstDSI CCRYGG 1 cut(s) 81
BstHHI GCGC 1 cut(s) 71
BstKTI GATC 2 cut(s) 28, 133
BstMAI GTCTC 1 cut(s) 169
BstMBI GATC 2 cut(s) 25, 130
BstMWI GCNNNNNNNGC 2 cut(s) 95, 112
BstSFI CTRYAG 1 cut(s) 197
BstV1I GCAGC 1 cut(s) 107
BtgI CCRYGG 1 cut(s) 81
BtgZI GCGATG 1 cut(s) 130
CfoI GCGC 1 cut(s) 71
CseI GACGC 1 cut(s) 47
CviAII CATG 1 cut(s) 82
CviJI RGCY 5 cut(s) 5, 98, 106, 115, 157
CviKI_1 RGCY 5 cut(s) 5, 98, 106, 115, 157
DdeI CTNAG 1 cut(s) 49
DpnI GATC 2 cut(s) 27, 132
DpnII GATC 2 cut(s) 25, 130
Eam1104I CTCTTC 1 cut(s) 147
EarI CTCTTC 1 cut(s) 147
EciI GGCGGA 2 cut(s) 25, 130
Eco130I CCWWGG 2 cut(s) 81, 159
Eco24I GRGCYC 1 cut(s) 159
Eco31I GGTCTC 1 cut(s) 169
EcoT14I CCWWGG 2 cut(s) 81, 159
EcoT38I GRGCYC 1 cut(s) 159
ErhI CCWWGG 2 cut(s) 81, 159
FaeI CATG 1 cut(s) 85
FaiI YATR 1 cut(s) 83
FatI CATG 1 cut(s) 81
Fnu4HI GCNGC 3 cut(s) 6, 96, 116
FriOI GRGCYC 1 cut(s) 159
Fsp4HI GCNGC 3 cut(s) 6, 96, 116
GlaI GCGC 1 cut(s) 70
GluI GCNGC 3 cut(s) 6, 96, 116
HapII CCGG 1 cut(s) 110
HgaI GACGC 1 cut(s) 47
HhaI GCGC 1 cut(s) 71
Hin1I GRCGYC 1 cut(s) 58
Hin1II CATG 1 cut(s) 85
Hin6I GCGC 1 cut(s) 69
HinP1I GCGC 1 cut(s) 69
HinfI GANTC 2 cut(s) 15, 203
HpaII CCGG 1 cut(s) 110
HphI GGTGA 1 cut(s) 203
Hpy166II GTNNAC 1 cut(s) 194
Hpy8I GTNNAC 1 cut(s) 194
Hpy99I CGWCG 1 cut(s) 44
HpyAV CCTTC 1 cut(s) 205
HpyF10VI GCNNNNNNNGC 2 cut(s) 95, 112
HpyF3I CTNAG 1 cut(s) 49
Hsp92I GRCGYC 1 cut(s) 58
Hsp92II CATG 1 cut(s) 85
HspAI GCGC 1 cut(s) 69
Kzo9I GATC 2 cut(s) 25, 130
LguI GCTCTTC 1 cut(s) 147
LmnI GCTCC 3 cut(s) 112, 123, 174
LpnPI CCDG 3 cut(s) 113, 123, 185
Lsp1109I GCAGC 1 cut(s) 107
MalI GATC 2 cut(s) 27, 132
MbiI CCGCTC 1 cut(s) 118
MboI GATC 2 cut(s) 25, 130
MboII GAAGA 2 cut(s) 164, 220
MhlI GDGCHC 1 cut(s) 159
MlyI GAGTC 2 cut(s) 9, 212
MnlI CCTC 3 cut(s) 100, 131, 182
MspI CCGG 1 cut(s) 110
MwoI GCNNNNNNNGC 2 cut(s) 95, 112
NcoI CCATGG 1 cut(s) 81
NdeII GATC 2 cut(s) 25, 130
NlaIII CATG 1 cut(s) 85
NlaIV GGNNCC 1 cut(s) 114
PciSI GCTCTTC 1 cut(s) 147
PkrI GCNGC 3 cut(s) 7, 97, 117
PleI GAGTC 2 cut(s) 9, 211
PpsI GAGTC 2 cut(s) 9, 211
PspN4I GGNNCC 1 cut(s) 114
SapI GCTCTTC 1 cut(s) 147
SatI GCNGC 3 cut(s) 6, 96, 116
Sau3AI GATC 2 cut(s) 25, 130
SchI GAGTC 2 cut(s) 9, 212
SduI GDGCHC 1 cut(s) 159
SetI ASST 1 cut(s) 165
SfcI CTRYAG 1 cut(s) 197
SgeI CNNG 7 cut(s) 74, 94, 112, 122, 172, 178, 212
SsiI CCGC 4 cut(s) 36, 93, 116, 141
StyI CCWWGG 2 cut(s) 81, 159
TaqI TCGA 4 cut(s) 13, 24, 129, 206
TauI GCSGC 1 cut(s) 118
TseI GCWGC 2 cut(s) 5, 95
TspDTI ATGAA 1 cut(s) 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.