Rh7CG466400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0018795
Physical Location & Seq
Reverse (-)
62284596 .. 62285227
632 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG466400.1

Sequence Viewer

Length: 150 bp
ATGGAGTCCATAGTCGCCTCAGCCGCCCAGAAGCCACAAGAGCCGCTCCTCTTCGATCTCATCTCCGCCGTCGTCGAAGAGCCCAAGGTCCCTCTACGTGAGTACCATTTCGGAGGATACATCTACCGGGAGGTCCGGAAAGAGCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

49

Amino Acids

5.65

Weight (kDa)

5.19

Isoelectric Point (pI)

39.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018795)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g14011
rosa_chinensis RchiOBHm_Chr1g0354611 RchiOBHm_Chr2g0131331 RchiOBHm_Chr5g0010141
rosa_laevigata RLG00000028196
rosa_multiflora Rmu_sc0036491.1_g000001
rosa_samantha Rh1AG254500 Rh1CG237600 Rh7CG466400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 46
AccIII TCCGGA 1 cut(s) 135
AciI CCGC 3 cut(s) 24, 44, 66
AfaI GTAC 1 cut(s) 104
AluBI AGCT 1 cut(s) 145
AluI AGCT 1 cut(s) 145
Aor13HI TCCGGA 1 cut(s) 135
AspS9I GGNCC 2 cut(s) 88, 133
AsuC2I CCSGG 1 cut(s) 128
AvaII GGWCC 2 cut(s) 88, 133
BaeI ACNNNNGTAYC 2 cut(s) 86, 119
BanII GRGCYC 1 cut(s) 84
BbvCI CCTCAGC 1 cut(s) 19
BceAI ACGGC 1 cut(s) 53
BciVI GTATCC 1 cut(s) 110
BcnI CCSGG 1 cut(s) 128
BfmI CTRYAG 1 cut(s) 146
BfuI GTATCC 1 cut(s) 110
BisI GCNGC 2 cut(s) 24, 44
BlsI GCNGC 2 cut(s) 25, 45
Bme1390I CCNGG 1 cut(s) 128
Bme18I GGWCC 2 cut(s) 88, 133
BmgT120I GGNCC 2 cut(s) 88, 133
BmiI GGNNCC 1 cut(s) 90
BmrFI CCNGG 1 cut(s) 128
Bpu10I CCTNAGC 1 cut(s) 19
BpuMI CCSGG 1 cut(s) 128
BsaAI YACGTR 1 cut(s) 98
BsaJI CCNNGG 1 cut(s) 84
BsaWI WCCGGW 1 cut(s) 135
BseAI TCCGGA 1 cut(s) 135
BseDI CCNNGG 1 cut(s) 84
BseMII CTCAG 1 cut(s) 33
BseRI GAGGAG 1 cut(s) 38
BsiSI CCGG 2 cut(s) 127, 136
BslFI GGGAC 1 cut(s) 74
BsmFI GGGAC 1 cut(s) 74
Bsp1286I GDGCHC 1 cut(s) 84
Bsp13I TCCGGA 1 cut(s) 135
Bsp143I GATC 1 cut(s) 55
BspACI CCGC 3 cut(s) 24, 44, 66
BspCNI CTCAG 1 cut(s) 32
BspEI TCCGGA 1 cut(s) 135
BspLI GGNNCC 1 cut(s) 90
BspQI GCTCTTC 1 cut(s) 72
BsrBI CCGCTC 1 cut(s) 46
BssECI CCNNGG 1 cut(s) 84
BssMI GATC 1 cut(s) 55
BssT1I CCWWGG 1 cut(s) 84
Bst6I CTCTTC 2 cut(s) 56, 72
BstBAI YACGTR 1 cut(s) 98
BstDEI CTNAG 1 cut(s) 19
BstKTI GATC 1 cut(s) 58
BstMBI GATC 1 cut(s) 55
BstMWI GCNNNNNNNGC 2 cut(s) 23, 40
BstSCI CCNGG 1 cut(s) 126
BstSFI CTRYAG 1 cut(s) 146
BsuI GTATCC 1 cut(s) 110
Cfr13I GGNCC 2 cut(s) 88, 133
Csp6I GTAC 1 cut(s) 103
CviJI RGCY 5 cut(s) 23, 34, 43, 82, 145
CviKI_1 RGCY 5 cut(s) 23, 34, 43, 82, 145
CviQI GTAC 1 cut(s) 103
DdeI CTNAG 1 cut(s) 19
DpnI GATC 1 cut(s) 57
DpnII GATC 1 cut(s) 55
Eam1104I CTCTTC 2 cut(s) 56, 72
EarI CTCTTC 2 cut(s) 56, 72
EciI GGCGGA 1 cut(s) 55
Eco130I CCWWGG 1 cut(s) 84
Eco24I GRGCYC 1 cut(s) 84
Eco47I GGWCC 2 cut(s) 88, 133
EcoO109I RGGNCCY 1 cut(s) 88
EcoT14I CCWWGG 1 cut(s) 84
EcoT38I GRGCYC 1 cut(s) 84
ErhI CCWWGG 1 cut(s) 84
FaiI YATR 1 cut(s) 11
FaqI GGGAC 1 cut(s) 74
Fnu4HI GCNGC 2 cut(s) 24, 44
FriOI GRGCYC 1 cut(s) 84
Fsp4HI GCNGC 2 cut(s) 24, 44
GluI GCNGC 2 cut(s) 24, 44
HapII CCGG 2 cut(s) 127, 136
HinfI GANTC 1 cut(s) 5
HpaII CCGG 2 cut(s) 127, 136
Hpy188I TCNGA 1 cut(s) 113
Hpy188III TCNNGA 1 cut(s) 136
Hpy99I CGWCG 2 cut(s) 74, 77
HpyCH4IV ACGT 1 cut(s) 97
HpyF10VI GCNNNNNNNGC 2 cut(s) 23, 40
HpyF3I CTNAG 1 cut(s) 19
HpySE526I ACGT 1 cut(s) 97
Kpn2I TCCGGA 1 cut(s) 135
Kzo9I GATC 1 cut(s) 55
LguI GCTCTTC 1 cut(s) 72
LmnI GCTCC 1 cut(s) 51
LpnPI CCDG 2 cut(s) 41, 140
MaeII ACGT 1 cut(s) 97
MalI GATC 1 cut(s) 57
MbiI CCGCTC 1 cut(s) 46
MboI GATC 1 cut(s) 55
MboII GAAGA 2 cut(s) 43, 89
MhlI GDGCHC 1 cut(s) 84
MlyI GAGTC 1 cut(s) 14
MnlI CCTC 5 cut(s) 28, 59, 102, 107, 124
MroI TCCGGA 1 cut(s) 135
MspI CCGG 2 cut(s) 127, 136
MspR9I CCNGG 1 cut(s) 128
MwoI GCNNNNNNNGC 2 cut(s) 23, 40
NciI CCSGG 1 cut(s) 128
NdeII GATC 1 cut(s) 55
NlaIV GGNNCC 1 cut(s) 90
PciSI GCTCTTC 1 cut(s) 72
PkrI GCNGC 2 cut(s) 25, 45
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
Ppu21I YACGTR 1 cut(s) 98
PpuMI RGGWCCY 1 cut(s) 88
Psp5II RGGWCCY 1 cut(s) 88
PspN4I GGNNCC 1 cut(s) 90
PspPI GGNCC 2 cut(s) 88, 133
PspPPI RGGWCCY 1 cut(s) 88
RsaI GTAC 1 cut(s) 104
RsaNI GTAC 1 cut(s) 103
SapI GCTCTTC 1 cut(s) 72
SatI GCNGC 2 cut(s) 24, 44
Sau3AI GATC 1 cut(s) 55
Sau96I GGNCC 2 cut(s) 88, 133
SchI GAGTC 1 cut(s) 14
ScrFI CCNGG 1 cut(s) 128
SduI GDGCHC 1 cut(s) 84
SetI ASST 4 cut(s) 90, 100, 135, 147
SfcI CTRYAG 1 cut(s) 146
SgeI CNNG 6 cut(s) 40, 50, 97, 110, 139, 140
SinI GGWCC 2 cut(s) 88, 133
SsiI CCGC 3 cut(s) 24, 44, 66
StyD4I CCNGG 1 cut(s) 126
StyI CCWWGG 1 cut(s) 84
TaiI ACGT 1 cut(s) 100
TaqI TCGA 2 cut(s) 54, 75
TauI GCSGC 2 cut(s) 26, 46
VpaK11BI GGWCC 2 cut(s) 88, 133
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.