RchiOBHm_Chr1g0354611

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0018795
Physical Location & Seq
Reverse (-)
47502237 .. 47502727
491 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ58013

Sequence Viewer

Length: 330 bp
ATGCCTCCCTCTCATGCGCTCCATCACGGTGCCCGTCGGTGGCGCCTTGTGCTTCAAAATCACACTCTAATGGCGAAGAAGCACGTCAAAGATAACCCCCCTGCCGCTCTCTCAGTTCGGCGTCTTGGTAGCGCAATGGAGTCCATAGTCGCCTCCGCCGCCCAGAAGCCACCGGAGCCCTCCTCTGCTTCGATCTCCTCTCCGATCTCATCTCCGCCGTCATCGAAGAGCCAAGGTCCCTTTGCATATGCTAATAAGATTGAACTCTTCGTTGATAATTGGATTGAAGTTCTGTTTCTTTGTAGTTTTTGCTATGGAAAATGGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

109

Amino Acids

11.98

Weight (kDa)

9.76

Isoelectric Point (pI)

75.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018795)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g14011
rosa_chinensis RchiOBHm_Chr1g0354611 RchiOBHm_Chr2g0131331 RchiOBHm_Chr5g0010141
rosa_laevigata RLG00000028196
rosa_multiflora Rmu_sc0036491.1_g000001
rosa_samantha Rh1AG254500 Rh1CG237600 Rh7CG466400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 29, 42
AccBSI CCGCTC 1 cut(s) 107
AciI CCGC 4 cut(s) 105, 156, 159, 215
AcyI GRCGYC 2 cut(s) 43, 121
AfiI CCNNNNNNNGG 1 cut(s) 39
AgsI TTSAA 3 cut(s) 56, 263, 287
AjiI CACGTC 1 cut(s) 85
AspLEI GCGC 3 cut(s) 19, 45, 134
AspS9I GGNCC 1 cut(s) 236
AvaII GGWCC 1 cut(s) 236
BaeGI GKGCMC 1 cut(s) 34
BanI GGYRCC 2 cut(s) 29, 42
BanII GRGCYC 1 cut(s) 180
BccI CCATC 1 cut(s) 30
BceAI ACGGC 1 cut(s) 202
BfoI RGCGCY 1 cut(s) 46
BisI GCNGC 2 cut(s) 105, 159
BlsI GCNGC 2 cut(s) 106, 160
Bme18I GGWCC 1 cut(s) 236
BmgBI CACGTC 1 cut(s) 85
BmgT120I GGNCC 1 cut(s) 236
BmiI GGNNCC 4 cut(s) 31, 44, 177, 238
BplI GAGNNNNNCTC 2 cut(s) 167, 199
BsaHI GRCGYC 2 cut(s) 43, 121
BsaJI CCNNGG 1 cut(s) 232
BsaWI WCCGGW 1 cut(s) 172
Bsc4I CCNNNNNNNGG 1 cut(s) 39
Bse3DI GCAATG 1 cut(s) 141
BseDI CCNNGG 1 cut(s) 232
BseLI CCNNNNNNNGG 1 cut(s) 39
BseMI GCAATG 1 cut(s) 141
BseMII CTCAG 1 cut(s) 126
BseRI GAGGAG 2 cut(s) 172, 187
BseSI GKGCMC 1 cut(s) 34
BshNI GGYRCC 2 cut(s) 29, 42
BsiSI CCGG 1 cut(s) 173
BslFI GGGAC 1 cut(s) 222
BslI CCNNNNNNNGG 1 cut(s) 39
BsmFI GGGAC 1 cut(s) 222
Bsp1286I GDGCHC 2 cut(s) 34, 180
Bsp143I GATC 2 cut(s) 192, 204
BspACI CCGC 4 cut(s) 105, 156, 159, 215
BspCNI CTCAG 1 cut(s) 125
BspLI GGNNCC 4 cut(s) 31, 44, 177, 238
BspQI GCTCTTC 1 cut(s) 221
BspT107I GGYRCC 2 cut(s) 29, 42
BsrBI CCGCTC 1 cut(s) 107
BsrDI GCAATG 1 cut(s) 141
BssECI CCNNGG 1 cut(s) 232
BssMI GATC 2 cut(s) 192, 204
BssNI GRCGYC 2 cut(s) 43, 121
BssT1I CCWWGG 1 cut(s) 232
Bst4CI ACNGT 1 cut(s) 29
Bst6I CTCTTC 2 cut(s) 221, 272
BstACI GRCGYC 2 cut(s) 43, 121
BstDEI CTNAG 1 cut(s) 112
BstH2I RGCGCY 1 cut(s) 46
BstHHI GCGC 3 cut(s) 19, 45, 134
BstKTI GATC 2 cut(s) 195, 207
BstMBI GATC 2 cut(s) 192, 204
BstMWI GCNNNNNNNGC 3 cut(s) 49, 158, 175
BstSLI GKGCMC 1 cut(s) 34
BtrI CACGTC 1 cut(s) 85
CfoI GCGC 3 cut(s) 19, 45, 134
Cfr13I GGNCC 1 cut(s) 236
CseI GACGC 1 cut(s) 110
CviAII CATG 1 cut(s) 14
CviJI RGCY 3 cut(s) 169, 178, 231
CviKI_1 RGCY 3 cut(s) 169, 178, 231
DdeI CTNAG 1 cut(s) 112
DinI GGCGCC 1 cut(s) 44
DpnI GATC 2 cut(s) 194, 206
DpnII GATC 2 cut(s) 192, 204
Eam1104I CTCTTC 2 cut(s) 221, 272
EarI CTCTTC 2 cut(s) 221, 272
EciI GGCGGA 2 cut(s) 145, 204
Eco130I CCWWGG 1 cut(s) 232
Eco24I GRGCYC 1 cut(s) 180
Eco47I GGWCC 1 cut(s) 236
EcoO109I RGGNCCY 1 cut(s) 236
EcoT14I CCWWGG 1 cut(s) 232
EcoT38I GRGCYC 1 cut(s) 180
EgeI GGCGCC 1 cut(s) 44
EheI GGCGCC 1 cut(s) 44
ErhI CCWWGG 1 cut(s) 232
FaeI CATG 1 cut(s) 17
FaiI YATR 5 cut(s) 15, 146, 247, 249, 315
FaqI GGGAC 1 cut(s) 222
FatI CATG 1 cut(s) 13
FauNDI CATATG 1 cut(s) 247
Fnu4HI GCNGC 2 cut(s) 105, 159
FriOI GRGCYC 1 cut(s) 180
Fsp4HI GCNGC 2 cut(s) 105, 159
GlaI GCGC 3 cut(s) 18, 44, 133
GluI GCNGC 2 cut(s) 105, 159
HaeII RGCGCY 1 cut(s) 46
HapII CCGG 1 cut(s) 173
HgaI GACGC 1 cut(s) 110
HhaI GCGC 3 cut(s) 19, 45, 134
Hin1I GRCGYC 2 cut(s) 43, 121
Hin1II CATG 1 cut(s) 17
Hin6I GCGC 3 cut(s) 17, 43, 132
HinP1I GCGC 3 cut(s) 17, 43, 132
HinfI GANTC 1 cut(s) 140
HpaII CCGG 1 cut(s) 173
Hpy188I TCNGA 1 cut(s) 204
Hpy99I CGWCG 1 cut(s) 39
HpyCH4III ACNGT 1 cut(s) 29
HpyCH4IV ACGT 1 cut(s) 84
HpyCH4V TGCA 1 cut(s) 245
HpyF10VI GCNNNNNNNGC 3 cut(s) 49, 158, 175
HpyF3I CTNAG 1 cut(s) 112
HpySE526I ACGT 1 cut(s) 84
Hsp92I GRCGYC 2 cut(s) 43, 121
Hsp92II CATG 1 cut(s) 17
HspAI GCGC 3 cut(s) 17, 43, 132
KasI GGCGCC 1 cut(s) 42
Kzo9I GATC 2 cut(s) 192, 204
LguI GCTCTTC 1 cut(s) 221
LmnI GCTCC 2 cut(s) 24, 175
LpnPI CCDG 3 cut(s) 114, 176, 186
MaeII ACGT 1 cut(s) 84
MalI GATC 2 cut(s) 194, 206
MbiI CCGCTC 1 cut(s) 107
MboI GATC 2 cut(s) 192, 204
MboII GAAGA 3 cut(s) 88, 238, 259
MhlI GDGCHC 2 cut(s) 34, 180
MluCI AATT 1 cut(s) 277
Mly113I GGCGCC 1 cut(s) 43
MlyI GAGTC 1 cut(s) 149
MnlI CCTC 6 cut(s) 15, 19, 163, 190, 193, 208
MslI CAYNNNNRTG 2 cut(s) 27, 68
MspI CCGG 1 cut(s) 173
MwoI GCNNNNNNNGC 3 cut(s) 49, 158, 175
NarI GGCGCC 1 cut(s) 43
NdeI CATATG 1 cut(s) 247
NdeII GATC 2 cut(s) 192, 204
NlaIII CATG 1 cut(s) 17
NlaIV GGNNCC 4 cut(s) 31, 44, 177, 238
PciSI GCTCTTC 1 cut(s) 221
PkrI GCNGC 2 cut(s) 106, 160
PleI GAGTC 1 cut(s) 148
PluTI GGCGCC 1 cut(s) 46
PpsI GAGTC 1 cut(s) 148
PpuMI RGGWCCY 1 cut(s) 236
Psp5II RGGWCCY 1 cut(s) 236
PspN4I GGNNCC 4 cut(s) 31, 44, 177, 238
PspPI GGNCC 1 cut(s) 236
PspPPI RGGWCCY 1 cut(s) 236
RseI CAYNNNNRTG 2 cut(s) 27, 68
SapI GCTCTTC 1 cut(s) 221
SatI GCNGC 2 cut(s) 105, 159
Sau3AI GATC 2 cut(s) 192, 204
Sau96I GGNCC 1 cut(s) 236
SchI GAGTC 1 cut(s) 149
SduI GDGCHC 2 cut(s) 34, 180
SetI ASST 2 cut(s) 87, 238
SfoI GGCGCC 1 cut(s) 44
SinI GGWCC 1 cut(s) 236
SmiMI CAYNNNNRTG 2 cut(s) 27, 68
Sse9I AATT 1 cut(s) 277
SsiI CCGC 4 cut(s) 105, 156, 159, 215
SspDI GGCGCC 1 cut(s) 42
StyI CCWWGG 1 cut(s) 232
TaaI ACNGT 1 cut(s) 29
TaiI ACGT 1 cut(s) 87
TaqI TCGA 2 cut(s) 191, 224
TasI AATT 1 cut(s) 277
TauI GCSGC 2 cut(s) 107, 161
VpaK11BI GGWCC 1 cut(s) 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.