RchiOBHm_Chr2g0131331

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Forward (+)
47431813 .. 47432174
362 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ50269

Sequence Viewer

Length: 276 bp
ATGGCTGCCCATCGACTCTGCTTCGATCTCATCTCCATCGTCGCTCTCTCAGTTCAGCGTCCCTTTCTCTTCTCCTTCTTCAGTTCTTCCTCCTCTGTTCTCCTTCCTCTTCTCCACTCCCATGGCTGCCCATCGACTCTGCTTCGATCTCCGCCGTCGCTCTCTCAGTTCGGCGTCCCTTTCTCTTCTCCTTCTCCGCAGCCCAGAAGCCACCGGAGCCGCTCCTCTGCTTCGATCTCATCTCCGCCATCGCCGAAAAGCCCAAGGTCCCGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

91

Amino Acids

9.82

Weight (kDa)

12.0

Isoelectric Point (pI)

113.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0018795)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 222
AciI CCGC 5 cut(s) 152, 197, 220, 245, 271
AcuI CTGAAG 1 cut(s) 64
AcyI GRCGYC 1 cut(s) 174
ApeKI GCWGC 3 cut(s) 5, 126, 199
AspS9I GGNCC 1 cut(s) 267
AvaII GGWCC 1 cut(s) 267
BbvI GCAGC 2 cut(s) 113, 211
BccI CCATC 4 cut(s) 18, 44, 139, 256
BceAI ACGGC 1 cut(s) 139
BisI GCNGC 4 cut(s) 6, 127, 200, 220
BlsI GCNGC 4 cut(s) 7, 128, 201, 221
Bme18I GGWCC 1 cut(s) 267
BmgT120I GGNCC 1 cut(s) 267
BmiI GGNNCC 2 cut(s) 218, 269
BsaHI GRCGYC 1 cut(s) 174
BsaJI CCNNGG 2 cut(s) 121, 263
BsaWI WCCGGW 1 cut(s) 213
BseDI CCNNGG 2 cut(s) 121, 263
BseMII CTCAG 2 cut(s) 63, 179
BseRI GAGGAG 2 cut(s) 82, 214
BseXI GCAGC 2 cut(s) 113, 211
BsiSI CCGG 1 cut(s) 214
BslFI GGGAC 3 cut(s) 45, 161, 253
BsmFI GGGAC 3 cut(s) 45, 161, 253
Bsp143I GATC 3 cut(s) 25, 146, 234
Bsp19I CCATGG 1 cut(s) 121
BspACI CCGC 5 cut(s) 152, 197, 220, 245, 271
BspCNI CTCAG 2 cut(s) 62, 178
BspLI GGNNCC 2 cut(s) 218, 269
BsrBI CCGCTC 1 cut(s) 222
BssECI CCNNGG 2 cut(s) 121, 263
BssMI GATC 3 cut(s) 25, 146, 234
BssNI GRCGYC 1 cut(s) 174
BssT1I CCWWGG 2 cut(s) 121, 263
Bst6I CTCTTC 3 cut(s) 74, 114, 190
BstACI GRCGYC 1 cut(s) 174
BstDEI CTNAG 2 cut(s) 49, 165
BstDSI CCRYGG 1 cut(s) 121
BstKTI GATC 3 cut(s) 28, 149, 237
BstMBI GATC 3 cut(s) 25, 146, 234
BstMWI GCNNNNNNNGC 1 cut(s) 216
BstV1I GCAGC 2 cut(s) 113, 211
BstXI CCANNNNNNTGG 1 cut(s) 122
BtgI CCRYGG 1 cut(s) 121
BtgZI GCGATG 1 cut(s) 234
Cfr13I GGNCC 1 cut(s) 267
CseI GACGC 2 cut(s) 47, 163
CviAII CATG 1 cut(s) 122
CviJI RGCY 6 cut(s) 5, 126, 202, 210, 219, 261
CviKI_1 RGCY 6 cut(s) 5, 126, 202, 210, 219, 261
DdeI CTNAG 2 cut(s) 49, 165
DpnI GATC 3 cut(s) 27, 148, 236
DpnII GATC 3 cut(s) 25, 146, 234
Eam1104I CTCTTC 3 cut(s) 74, 114, 190
EarI CTCTTC 3 cut(s) 74, 114, 190
EciI GGCGGA 2 cut(s) 141, 234
Eco130I CCWWGG 2 cut(s) 121, 263
Eco47I GGWCC 1 cut(s) 267
Eco57I CTGAAG 1 cut(s) 64
EcoO109I RGGNCCY 1 cut(s) 267
EcoT14I CCWWGG 2 cut(s) 121, 263
ErhI CCWWGG 2 cut(s) 121, 263
FaeI CATG 1 cut(s) 125
FaiI YATR 1 cut(s) 123
FaqI GGGAC 3 cut(s) 45, 161, 253
FatI CATG 1 cut(s) 121
Fnu4HI GCNGC 4 cut(s) 6, 127, 200, 220
Fsp4HI GCNGC 4 cut(s) 6, 127, 200, 220
GluI GCNGC 4 cut(s) 6, 127, 200, 220
HapII CCGG 1 cut(s) 214
HgaI GACGC 2 cut(s) 47, 163
Hin1I GRCGYC 1 cut(s) 174
Hin1II CATG 1 cut(s) 125
HinfI GANTC 2 cut(s) 15, 136
HpaII CCGG 1 cut(s) 214
Hpy99I CGWCG 2 cut(s) 44, 160
HpyAV CCTTC 3 cut(s) 85, 113, 201
HpyF10VI GCNNNNNNNGC 1 cut(s) 216
HpyF3I CTNAG 2 cut(s) 49, 165
Hsp92I GRCGYC 1 cut(s) 174
Hsp92II CATG 1 cut(s) 125
Kzo9I GATC 3 cut(s) 25, 146, 234
LmnI GCTCC 2 cut(s) 216, 227
LpnPI CCDG 2 cut(s) 217, 227
Lsp1109I GCAGC 2 cut(s) 113, 211
MalI GATC 3 cut(s) 27, 148, 236
MbiI CCGCTC 1 cut(s) 222
MboI GATC 3 cut(s) 25, 146, 234
MboII GAAGA 5 cut(s) 61, 70, 78, 101, 177
MlyI GAGTC 2 cut(s) 9, 130
MnlI CCTC 4 cut(s) 100, 103, 117, 235
MslI CAYNNNNRTG 1 cut(s) 120
MspA1I CMGCKG 1 cut(s) 273
MspI CCGG 1 cut(s) 214
MwoI GCNNNNNNNGC 1 cut(s) 216
NcoI CCATGG 1 cut(s) 121
NdeII GATC 3 cut(s) 25, 146, 234
NlaIII CATG 1 cut(s) 125
NlaIV GGNNCC 2 cut(s) 218, 269
PkrI GCNGC 4 cut(s) 7, 128, 201, 221
PleI GAGTC 2 cut(s) 9, 130
PpsI GAGTC 2 cut(s) 9, 130
PpuMI RGGWCCY 1 cut(s) 267
Psp5II RGGWCCY 1 cut(s) 267
PspN4I GGNNCC 2 cut(s) 218, 269
PspPI GGNCC 1 cut(s) 267
PspPPI RGGWCCY 1 cut(s) 267
RseI CAYNNNNRTG 1 cut(s) 120
SatI GCNGC 4 cut(s) 6, 127, 200, 220
Sau3AI GATC 3 cut(s) 25, 146, 234
Sau96I GGNCC 1 cut(s) 267
SchI GAGTC 2 cut(s) 9, 130
SetI ASST 1 cut(s) 269
SgeI CNNG 3 cut(s) 134, 216, 226
SinI GGWCC 1 cut(s) 267
SmiMI CAYNNNNRTG 1 cut(s) 120
SsiI CCGC 5 cut(s) 152, 197, 220, 245, 271
StyI CCWWGG 2 cut(s) 121, 263
TaqI TCGA 5 cut(s) 13, 24, 134, 145, 233
TauI GCSGC 1 cut(s) 222
TseI GCWGC 3 cut(s) 5, 126, 199
VpaK11BI GGWCC 1 cut(s) 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.